RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 CYP3A4P08684 503 aa16.63■□□□□ 0.25
SHMT2-235ENST00000557740 CD52P31358 61 aa16.63■□□□□ 0.25
SHMT2-235ENST00000557740 CTNNB1P35222 781 aa16.63■□□□□ 0.25
SHMT2-235ENST00000557740 TMEM62Q0P6H9 643 aa16.63■□□□□ 0.25
SHMT2-235ENST00000557740 GPM6BQ13491 265 aa16.63■□□□□ 0.25
SHMT2-235ENST00000557740 PKN1Q16512 942 aa16.63■□□□□ 0.25
SHMT2-235ENST00000557740 PDXDC2PQ6P474 469 aa16.63■□□□□ 0.25
SHMT2-235ENST00000557740 FBXL16Q8N461 479 aa16.63■□□□□ 0.25
SHMT2-235ENST00000557740 BICD2Q8TD16 824 aa16.63■□□□□ 0.25
SHMT2-235ENST00000557740 ZNF577Q9BSK1 485 aa16.63■□□□□ 0.25
SHMT2-235ENST00000557740 UBE2ZQ9H832 354 aaPredicted RBP16.63■□□□□ 0.25
SHMT2-235ENST00000557740 ZNF302Q9NR11 478 aa16.63■□□□□ 0.25
SHMT2-235ENST00000557740 RWDD3Q9Y3V2 267 aa16.63■□□□□ 0.25
SHMT2-235ENST00000557740 ADGRA3Q8IWK6 1321 aa16.63■□□□□ 0.25
SHMT2-235ENST00000557740 BRWD1Q9NSI6 2320 aa16.62■□□□□ 0.25
SHMT2-235ENST00000557740 IGLV3-22A0A075B6J6 115 aa16.62■□□□□ 0.25
SHMT2-235ENST00000557740 SMIM35A0A1B0GVV1 85 aa16.62■□□□□ 0.25
SHMT2-235ENST00000557740 H3BNC9 293 aa16.62■□□□□ 0.25
SHMT2-235ENST00000557740 HBP1O60381 514 aa16.62■□□□□ 0.25
SHMT2-235ENST00000557740 PAK2Q13177 524 aa16.62■□□□□ 0.25
SHMT2-235ENST00000557740 MTHFD1LQ6UB35 978 aa16.62■□□□□ 0.25
SHMT2-235ENST00000557740 ABHD15Q6UXT9 468 aa16.62■□□□□ 0.25
SHMT2-235ENST00000557740 CCDC60Q8IWA6 550 aaPredicted RBP16.62■□□□□ 0.25
SHMT2-235ENST00000557740 ATP8B4Q8TF62 1192 aa16.62■□□□□ 0.25
SHMT2-235ENST00000557740 CRYGNQ8WXF5 182 aa16.62■□□□□ 0.25
SHMT2-235ENST00000557740 UIMC1Q96RL1 719 aa16.62■□□□□ 0.25
SHMT2-235ENST00000557740 SLC26A6Q9BXS9 759 aa16.62■□□□□ 0.25
SHMT2-235ENST00000557740 FTHL17Q9BXU8 183 aa16.62■□□□□ 0.25
SHMT2-235ENST00000557740 RNF26Q9BY78 433 aaPredicted RBP16.62■□□□□ 0.25
SHMT2-235ENST00000557740 AGXT2Q9BYV1 514 aa16.62■□□□□ 0.25
SHMT2-235ENST00000557740 AGO3Q9H9G7 860 aaKnown RBP16.62■□□□□ 0.25
SHMT2-235ENST00000557740 TBC1D22BQ9NU19 505 aa16.62■□□□□ 0.25
SHMT2-235ENST00000557740 SQORQ9Y6N5 450 aa16.62■□□□□ 0.25
SHMT2-235ENST00000557740 IGKV6D-21A0A0A0MT36 114 aa16.61■□□□□ 0.25
SHMT2-235ENST00000557740 ENPP3O14638 875 aa16.61■□□□□ 0.25
SHMT2-235ENST00000557740 PPFIA3O75145 1194 aa16.61■□□□□ 0.25
SHMT2-235ENST00000557740 KRT76Q01546 638 aa16.61■□□□□ 0.25
SHMT2-235ENST00000557740 PRR16Q569H4 304 aa16.61■□□□□ 0.25
SHMT2-235ENST00000557740 CKAP2LQ8IYA6 745 aa16.61■□□□□ 0.25
SHMT2-235ENST00000557740 NME8Q8N427 588 aa16.61■□□□□ 0.25
SHMT2-235ENST00000557740 RASGRP4Q8TDF6 673 aa16.61■□□□□ 0.25
SHMT2-235ENST00000557740 C11orf84Q9BUA3 381 aaPredicted RBP16.61■□□□□ 0.25
SHMT2-235ENST00000557740 CELF4Q9BZC1 486 aaKnown RBP16.61■□□□□ 0.25
SHMT2-235ENST00000557740 IGSF9BQ9UPX0 1349 aa16.61■□□□□ 0.25
SHMT2-235ENST00000557740 COL1A2P08123 1366 aa16.61■□□□□ 0.25
SHMT2-235ENST00000557740 DHX15O43143 795 aaKnown RBP16.6■□□□□ 0.25
SHMT2-235ENST00000557740 IFNAR1P17181 557 aa16.6■□□□□ 0.25
SHMT2-235ENST00000557740 KCNA5P22460 613 aa16.6■□□□□ 0.25
SHMT2-235ENST00000557740 KLRC1P26715 233 aa16.6■□□□□ 0.25
SHMT2-235ENST00000557740 PDIA3P30101 505 aaKnown RBP16.6■□□□□ 0.25
SHMT2-235ENST00000557740 BTG3Q14201 252 aaPredicted RBP16.6■□□□□ 0.25
SHMT2-235ENST00000557740 ZNF484Q5JVG2 852 aa16.6■□□□□ 0.25
SHMT2-235ENST00000557740 ZNF746Q6NUN9 644 aaPredicted RBP16.6■□□□□ 0.25
SHMT2-235ENST00000557740 SWSAP1Q6NVH7 229 aa16.6■□□□□ 0.25
SHMT2-235ENST00000557740 SMAP1Q8IYB5 467 aaPredicted RBP16.6■□□□□ 0.25
SHMT2-235ENST00000557740 TRIM22Q8IYM9 498 aa16.6■□□□□ 0.25
SHMT2-235ENST00000557740 NCOA5Q9HCD5 579 aaKnown RBP16.6■□□□□ 0.25
SHMT2-235ENST00000557740 VPS54Q9P1Q0 977 aa16.6■□□□□ 0.25
SHMT2-235ENST00000557740 GINS2Q9Y248 185 aa16.6■□□□□ 0.25
SHMT2-235ENST00000557740 KDM3AQ9Y4C1 1321 aa16.6■□□□□ 0.25
SHMT2-235ENST00000557740 REV3LO60673 3130 aa16.59■□□□□ 0.25
SHMT2-235ENST00000557740 ADAMTS3O15072 1205 aa16.59■□□□□ 0.25
SHMT2-235ENST00000557740 EPB41L2O43491 1005 aaKnown RBP16.59■□□□□ 0.25
SHMT2-235ENST00000557740 PSAPP07602 524 aa16.59■□□□□ 0.25
SHMT2-235ENST00000557740 STAG3L1P0CL83 205 aa16.59■□□□□ 0.25
SHMT2-235ENST00000557740 BMPR1AP36894 532 aa16.59■□□□□ 0.25
SHMT2-235ENST00000557740 CCT2P78371 535 aaKnown RBP16.59■□□□□ 0.25
SHMT2-235ENST00000557740 NTRK3Q16288 839 aa16.59■□□□□ 0.25
SHMT2-235ENST00000557740 RUFY3Q7L099 469 aa16.59■□□□□ 0.25
SHMT2-235ENST00000557740 NPAS4Q8IUM7 802 aa16.59■□□□□ 0.25
SHMT2-235ENST00000557740 BANK1Q8NDB2 785 aa16.59■□□□□ 0.25
SHMT2-235ENST00000557740 LINC01599Q8WXQ3 324 aa16.59■□□□□ 0.25
SHMT2-235ENST00000557740 RC3H2Q9HBD1 1191 aaKnown RBP16.59■□□□□ 0.25
SHMT2-235ENST00000557740 PADI3Q9ULW8 664 aa16.59■□□□□ 0.25
SHMT2-235ENST00000557740 SAMM50Q9Y512 469 aa16.59■□□□□ 0.25
SHMT2-235ENST00000557740 CYP46A1Q9Y6A2 500 aa16.59■□□□□ 0.25
SHMT2-235ENST00000557740 MUC3AQ02505 3323 aa16.58■□□□□ 0.24
SHMT2-235ENST00000557740 C5orf67F2Z3F1 127 aa16.58■□□□□ 0.24
SHMT2-235ENST00000557740 CPLX1O14810 134 aa16.58■□□□□ 0.24
SHMT2-235ENST00000557740 RB1P06400 928 aa16.58■□□□□ 0.24
SHMT2-235ENST00000557740 NEFLP07196 543 aa16.58■□□□□ 0.24
SHMT2-235ENST00000557740 CIITAP33076 1130 aa16.58■□□□□ 0.24
SHMT2-235ENST00000557740 NLRP5P59047 1200 aa16.58■□□□□ 0.24
SHMT2-235ENST00000557740 TMEM266Q2M3C6 531 aa16.58■□□□□ 0.24
SHMT2-235ENST00000557740 LEXMQ3ZCV2 418 aa16.58■□□□□ 0.24
SHMT2-235ENST00000557740 TCEAL5Q5H9L2 206 aa16.58■□□□□ 0.24
SHMT2-235ENST00000557740 BBXQ8WY36 941 aaPredicted RBP16.58■□□□□ 0.24
SHMT2-235ENST00000557740 ZNF689Q96CS4 500 aaPredicted RBP16.58■□□□□ 0.24
SHMT2-235ENST00000557740 NSUN3Q9H649 340 aaKnown RBP16.58■□□□□ 0.24
SHMT2-235ENST00000557740 SH3GLB2Q9NR46 395 aa16.58■□□□□ 0.24
SHMT2-235ENST00000557740 PCDHA10Q9Y5I2 948 aa16.58■□□□□ 0.24
SHMT2-235ENST00000557740 TCF20Q9UGU0 1960 aaKnown RBP16.58■□□□□ 0.24
SHMT2-235ENST00000557740 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-235ENST00000557740 DGKIO75912 1065 aa16.57■□□□□ 0.24
SHMT2-235ENST00000557740 IBSPP21815 317 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-235ENST00000557740 EVCP57679 992 aa16.57■□□□□ 0.24
SHMT2-235ENST00000557740 SSRP1Q08945 709 aaKnown RBP16.57■□□□□ 0.24
SHMT2-235ENST00000557740 NFX1Q12986 1120 aaKnown RBP16.57■□□□□ 0.24
SHMT2-235ENST00000557740 TOB2Q14106 344 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-235ENST00000557740 ODR4Q5SWX8 454 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms