RNA–Protein interactions for RNA: ENST00000557703.5

SHMT2-234, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-234ENST00000557703 POLR3CQ9BUI4 534 aaPredicted RBP15.36■□□□□ 0.05
SHMT2-234ENST00000557703 NIFKQ9BYG3 293 aaKnown RBP15.36■□□□□ 0.05
SHMT2-234ENST00000557703 TUFT1Q9NNX1 390 aa15.36■□□□□ 0.05
SHMT2-234ENST00000557703 EML1O00423 815 aa15.35■□□□□ 0.05
SHMT2-234ENST00000557703 CHMP2AO43633 222 aa15.35■□□□□ 0.05
SHMT2-234ENST00000557703 F13A1P00488 732 aa15.35■□□□□ 0.05
SHMT2-234ENST00000557703 OATP04181 439 aa15.35■□□□□ 0.05
SHMT2-234ENST00000557703 INSRRP14616 1297 aa15.35■□□□□ 0.05
SHMT2-234ENST00000557703 RAG1P15918 1043 aa15.35■□□□□ 0.05
SHMT2-234ENST00000557703 RPA1P27694 616 aa15.35■□□□□ 0.05
SHMT2-234ENST00000557703 RFC2P35250 354 aa15.35■□□□□ 0.05
SHMT2-234ENST00000557703 TECP42680 631 aa15.35■□□□□ 0.05
SHMT2-234ENST00000557703 GRIK4Q16099 956 aa15.35■□□□□ 0.05
SHMT2-234ENST00000557703 GDF6Q6KF10 455 aaPredicted RBP15.35■□□□□ 0.05
SHMT2-234ENST00000557703 FERMT3Q86UX7 667 aa15.35■□□□□ 0.05
SHMT2-234ENST00000557703 TMEM199Q8N511 208 aa15.35■□□□□ 0.05
SHMT2-234ENST00000557703 RETREG2Q8NC44 543 aa15.35■□□□□ 0.05
SHMT2-234ENST00000557703 EIF2AK1Q9BQI3 630 aaKnown RBP15.35■□□□□ 0.05
SHMT2-234ENST00000557703 TRPV6Q9H1D0 765 aa15.35■□□□□ 0.05
SHMT2-234ENST00000557703 HIPK3Q9H422 1215 aa15.35■□□□□ 0.05
SHMT2-234ENST00000557703 TUBE1Q9UJT0 475 aa15.35■□□□□ 0.05
SHMT2-234ENST00000557703 CFAP45Q9UL16 551 aa15.35■□□□□ 0.05
SHMT2-234ENST00000557703 PCDHA2Q9Y5H9 948 aa15.35■□□□□ 0.05
SHMT2-234ENST00000557703 ALPK3Q96L96 1907 aa15.35■□□□□ 0.05
SHMT2-234ENST00000557703 TNRC18O15417 2968 aaPredicted RBP15.34■□□□□ 0.05
SHMT2-234ENST00000557703 GAS2O43903 313 aaKnown RBP15.34■□□□□ 0.05
SHMT2-234ENST00000557703 SLITRK3O94933 977 aa15.34■□□□□ 0.05
SHMT2-234ENST00000557703 BRD1O95696 1058 aa15.34■□□□□ 0.05
SHMT2-234ENST00000557703 PFKMP08237 780 aa15.34■□□□□ 0.05
SHMT2-234ENST00000557703 ATP4AP20648 1035 aa15.34■□□□□ 0.05
SHMT2-234ENST00000557703 TMOD1P28289 359 aa15.34■□□□□ 0.05
SHMT2-234ENST00000557703 LONP1P36776 959 aaKnown RBP15.34■□□□□ 0.05
SHMT2-234ENST00000557703 CHMP4BP1P59074 171 aa15.34■□□□□ 0.05
SHMT2-234ENST00000557703 PRKCEQ02156 737 aa15.34■□□□□ 0.05
SHMT2-234ENST00000557703 PRPF38BQ5VTL8 546 aaKnown RBP15.34■□□□□ 0.05
SHMT2-234ENST00000557703 NCAPH2Q6IBW4 605 aa15.34■□□□□ 0.05
SHMT2-234ENST00000557703 MFSD5Q6N075 450 aa15.34■□□□□ 0.05
SHMT2-234ENST00000557703 LMBR1Q8WVP7 490 aa15.34■□□□□ 0.05
SHMT2-234ENST00000557703 GJA10Q969M2 543 aa15.34■□□□□ 0.05
SHMT2-234ENST00000557703 LXNQ9BS40 222 aa15.34■□□□□ 0.05
SHMT2-234ENST00000557703 NOC4LQ9BVI4 516 aaKnown RBP15.34■□□□□ 0.05
SHMT2-234ENST00000557703 ANKEF1Q9NU02 776 aa15.34■□□□□ 0.05
SHMT2-234ENST00000557703 TRMT13Q9NUP7 481 aaKnown RBP15.34■□□□□ 0.05
SHMT2-234ENST00000557703 SETD4Q9NVD3 440 aa15.34■□□□□ 0.05
SHMT2-234ENST00000557703 LRWD1Q9UFC0 647 aa15.34■□□□□ 0.05
SHMT2-234ENST00000557703 TELO2Q9Y4R8 837 aa15.34■□□□□ 0.05
SHMT2-234ENST00000557703 WDR81Q562E7 1941 aa15.33■□□□□ 0.05
SHMT2-234ENST00000557703 SMIM35A0A1B0GVV1 85 aa15.33■□□□□ 0.04
SHMT2-234ENST00000557703 ZNF862O60290 1169 aa15.33■□□□□ 0.04
SHMT2-234ENST00000557703 YEATS4O95619 227 aa15.33■□□□□ 0.04
SHMT2-234ENST00000557703 MARK3P27448 753 aa15.33■□□□□ 0.04
SHMT2-234ENST00000557703 BMP8BP34820 402 aa15.33■□□□□ 0.04
SHMT2-234ENST00000557703 NASPP49321 788 aaPredicted RBP15.33■□□□□ 0.04
SHMT2-234ENST00000557703 SLC39A14Q15043 492 aa15.33■□□□□ 0.04
SHMT2-234ENST00000557703 SF3A1Q15459 793 aaKnown RBP15.33■□□□□ 0.04
SHMT2-234ENST00000557703 KRT79Q5XKE5 535 aa15.33■□□□□ 0.04
SHMT2-234ENST00000557703 RPUSD2Q8IZ73 545 aaKnown RBP15.33■□□□□ 0.04
SHMT2-234ENST00000557703 NACC1Q96RE7 527 aa15.33■□□□□ 0.04
SHMT2-234ENST00000557703 NT5C3AQ9H0P0 336 aa15.33■□□□□ 0.04
SHMT2-234ENST00000557703 CIZ1Q9ULV3 898 aaPredicted RBP15.33■□□□□ 0.04
SHMT2-234ENST00000557703 TRIM43BA6NCK2 446 aa15.32■□□□□ 0.04
SHMT2-234ENST00000557703 SELPP16109 830 aa15.32■□□□□ 0.04
SHMT2-234ENST00000557703 DNM2P50570 870 aa15.32■□□□□ 0.04
SHMT2-234ENST00000557703 PPIGQ13427 754 aaKnown RBP eCLIP15.32■□□□□ 0.043e-10■□□□□ 10.6
SHMT2-234ENST00000557703 TARBP2Q15633 366 aaKnown RBP15.32■□□□□ 0.04
SHMT2-234ENST00000557703 MARCH8Q5T0T0 291 aa15.32■□□□□ 0.04
SHMT2-234ENST00000557703 TPH2Q8IWU9 490 aa15.32■□□□□ 0.04
SHMT2-234ENST00000557703 TRIM43Q96BQ3 446 aaPredicted RBP15.32■□□□□ 0.04
SHMT2-234ENST00000557703 UIMC1Q96RL1 719 aa15.32■□□□□ 0.04
SHMT2-234ENST00000557703 CTAGE1Q96RT6 745 aa15.32■□□□□ 0.04
SHMT2-234ENST00000557703 PRDM5Q9NQX1 630 aaPredicted RBP15.32■□□□□ 0.04
SHMT2-234ENST00000557703 SRPRBQ9Y5M8 271 aaKnown RBP15.32■□□□□ 0.04
SHMT2-234ENST00000557703 SQORQ9Y6N5 450 aa15.32■□□□□ 0.04
SHMT2-234ENST00000557703 KDM3AQ9Y4C1 1321 aa15.32■□□□□ 0.04
SHMT2-234ENST00000557703 A0A1W2PPC1 479 aa15.31■□□□□ 0.04
SHMT2-234ENST00000557703 POTEMA6NI47 508 aa15.31■□□□□ 0.04
SHMT2-234ENST00000557703 TREHO43280 583 aa15.31■□□□□ 0.04
SHMT2-234ENST00000557703 PPP6R2O75170 966 aa15.31■□□□□ 0.04
SHMT2-234ENST00000557703 KLRC1P26715 233 aa15.31■□□□□ 0.04
SHMT2-234ENST00000557703 YWHABP31946 246 aaKnown RBP15.31■□□□□ 0.04
SHMT2-234ENST00000557703 RFC5P40937 340 aa15.31■□□□□ 0.04
SHMT2-234ENST00000557703 TBC1D8BQ0IIM8 1120 aa15.31■□□□□ 0.04
SHMT2-234ENST00000557703 NBR1Q14596 966 aa15.31■□□□□ 0.04
SHMT2-234ENST00000557703 PTPAQ15257 358 aa15.31■□□□□ 0.04
SHMT2-234ENST00000557703 IER5Q5VY09 327 aa15.31■□□□□ 0.04
SHMT2-234ENST00000557703 MTHFD1LQ6UB35 978 aa15.31■□□□□ 0.04
SHMT2-234ENST00000557703 CATSPER3Q86XQ3 398 aa15.31■□□□□ 0.04
SHMT2-234ENST00000557703 USP38Q8NB14 1042 aa15.31■□□□□ 0.04
SHMT2-234ENST00000557703 SPRYD3Q8NCJ5 442 aa15.31■□□□□ 0.04
SHMT2-234ENST00000557703 KCNG4Q8TDN1 519 aa15.31■□□□□ 0.04
SHMT2-234ENST00000557703 DYDC2Q96IM9 177 aa15.31■□□□□ 0.04
SHMT2-234ENST00000557703 CYP26B1Q9NR63 512 aa15.31■□□□□ 0.04
SHMT2-234ENST00000557703 DBR1Q9UK59 544 aaKnown RBP15.31■□□□□ 0.04
SHMT2-234ENST00000557703 TRIP12Q14669 1992 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-234ENST00000557703 DDX11L8A8MPP1 907 aa15.3■□□□□ 0.04
SHMT2-234ENST00000557703 ZBTB42B2RXF5 422 aa15.3■□□□□ 0.04
SHMT2-234ENST00000557703 H0YGN5 161 aa15.3■□□□□ 0.04
SHMT2-234ENST00000557703 M0QZ92 97 aa15.3■□□□□ 0.04
SHMT2-234ENST00000557703 STBD1O95210 358 aa15.3■□□□□ 0.04
SHMT2-234ENST00000557703 SPATA31C1P0DKV0 1188 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms