RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 CELF3Q5SZQ8 465 aaKnown RBP14.32□□□□□ -0.12
SHMT2-230ENST00000557427 CATIPQ7Z7H3 387 aa14.32□□□□□ -0.12
SHMT2-230ENST00000557427 MB21D2Q8IYB1 491 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-230ENST00000557427 CRIPAKQ8N1N5 446 aa14.32□□□□□ -0.12
SHMT2-230ENST00000557427 PPP2R3CQ969Q6 453 aa14.32□□□□□ -0.12
SHMT2-230ENST00000557427 JAKMIP1Q96N16 626 aaKnown RBP14.32□□□□□ -0.12
SHMT2-230ENST00000557427 IWS1Q96ST2 819 aa14.32□□□□□ -0.12
SHMT2-230ENST00000557427 RMDN3Q96TC7 470 aa14.32□□□□□ -0.12
SHMT2-230ENST00000557427 BCAS3Q9H6U6 928 aa14.32□□□□□ -0.12
SHMT2-230ENST00000557427 LIMCH1Q9UPQ0 1083 aa14.32□□□□□ -0.12
SHMT2-230ENST00000557427 CYP46A1Q9Y6A2 500 aa14.32□□□□□ -0.12
SHMT2-230ENST00000557427 MRVI1Q9Y6F6 885 aa14.32□□□□□ -0.12
SHMT2-230ENST00000557427 MYO10Q9HD67 2058 aa14.32□□□□□ -0.12
SHMT2-230ENST00000557427 EIF2AK2P19525 551 aaKnown RBP14.31□□□□□ -0.12
SHMT2-230ENST00000557427 MCM5P33992 734 aa14.31□□□□□ -0.12
SHMT2-230ENST00000557427 AK2P54819 239 aa14.31□□□□□ -0.12
SHMT2-230ENST00000557427 ADAM17P78536 824 aa14.31□□□□□ -0.12
SHMT2-230ENST00000557427 COL9A3Q14050 684 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-230ENST00000557427 KRT32Q14532 448 aa14.31□□□□□ -0.12
SHMT2-230ENST00000557427 GRM4Q14833 912 aa14.31□□□□□ -0.12
SHMT2-230ENST00000557427 NAALADL2Q58DX5 795 aa14.31□□□□□ -0.12
SHMT2-230ENST00000557427 MCTP2Q6DN12 878 aa14.31□□□□□ -0.12
SHMT2-230ENST00000557427 ASTLQ6HA08 431 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-230ENST00000557427 NFXL1Q6ZNB6 911 aa14.31□□□□□ -0.12
SHMT2-230ENST00000557427 RUFY3Q7L099 469 aa14.31□□□□□ -0.12
SHMT2-230ENST00000557427 ZBTB33Q86T24 672 aa14.31□□□□□ -0.12
SHMT2-230ENST00000557427 HOMER1Q86YM7 354 aa14.31□□□□□ -0.12
SHMT2-230ENST00000557427 PIBF1Q8WXW3 757 aa14.31□□□□□ -0.12
SHMT2-230ENST00000557427 ZSCAN31Q96LW9 406 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-230ENST00000557427 SPATA33Q96N06 139 aa14.31□□□□□ -0.12
SHMT2-230ENST00000557427 LRRC2Q9BYS8 371 aa14.31□□□□□ -0.12
SHMT2-230ENST00000557427 EHMT1Q9H9B1 1298 aa14.31□□□□□ -0.12
SHMT2-230ENST00000557427 PDRG1Q9NUG6 133 aa14.31□□□□□ -0.12
SHMT2-230ENST00000557427 SETD4Q9NVD3 440 aa14.31□□□□□ -0.12
SHMT2-230ENST00000557427 CDH22Q9UJ99 828 aa14.31□□□□□ -0.12
SHMT2-230ENST00000557427 PLXNA4Q9HCM2 1894 aa14.31□□□□□ -0.12
SHMT2-230ENST00000557427 H3BRB1 525 aa14.3□□□□□ -0.12
SHMT2-230ENST00000557427 NR3C2P08235 984 aa14.3□□□□□ -0.12
SHMT2-230ENST00000557427 GHRP10912 638 aa14.3□□□□□ -0.12
SHMT2-230ENST00000557427 KCNC3Q14003 757 aa14.3□□□□□ -0.12
SHMT2-230ENST00000557427 ADCK5Q3MIX3 580 aa14.3□□□□□ -0.12
SHMT2-230ENST00000557427 SYCE2Q6PIF2 218 aa14.3□□□□□ -0.12
SHMT2-230ENST00000557427 LINC01599Q8WXQ3 324 aa14.3□□□□□ -0.12
SHMT2-230ENST00000557427 GPKOWQ92917 476 aaPredicted RBP eCLIP14.3□□□□□ -0.12
SHMT2-230ENST00000557427 PIGSQ96S52 555 aa14.3□□□□□ -0.12
SHMT2-230ENST00000557427 MYL10Q9BUA6 226 aa14.3□□□□□ -0.12
SHMT2-230ENST00000557427 TUT1Q9H6E5 874 aaKnown RBP14.3□□□□□ -0.12
SHMT2-230ENST00000557427 TLE6Q9H808 572 aa14.3□□□□□ -0.12
SHMT2-230ENST00000557427 MRPL11Q9Y3B7 192 aaKnown RBP14.3□□□□□ -0.12
SHMT2-230ENST00000557427 ABCB11O95342 1321 aa14.3□□□□□ -0.12
SHMT2-230ENST00000557427 GGPS1O95749 300 aa14.29□□□□□ -0.12
SHMT2-230ENST00000557427 TROAPQ12815 778 aa14.29□□□□□ -0.12
SHMT2-230ENST00000557427 LPIN1Q14693 890 aa14.29□□□□□ -0.12
SHMT2-230ENST00000557427 DUSP6Q16828 381 aa14.29□□□□□ -0.12
SHMT2-230ENST00000557427 SLC35G1Q2M3R5 365 aa14.29□□□□□ -0.12
SHMT2-230ENST00000557427 ARHGEF16Q5VV41 709 aa14.29□□□□□ -0.12
SHMT2-230ENST00000557427 RTN4RL1Q86UN2 441 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-230ENST00000557427 MCF2L2Q86YR7 1114 aa14.29□□□□□ -0.12
SHMT2-230ENST00000557427 APOL5Q9BWW9 433 aa14.29□□□□□ -0.12
SHMT2-230ENST00000557427 AMNQ9BXJ7 453 aa14.29□□□□□ -0.12
SHMT2-230ENST00000557427 LY9Q9HBG7 655 aa14.29□□□□□ -0.12
SHMT2-230ENST00000557427 PXMP2Q9NR77 195 aa14.29□□□□□ -0.12
SHMT2-230ENST00000557427 SH2B1Q9NRF2 756 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-230ENST00000557427 SORCS3Q9UPU3 1222 aa14.29□□□□□ -0.12
SHMT2-230ENST00000557427 PCDHA1Q9Y5I3 950 aa14.29□□□□□ -0.12
SHMT2-230ENST00000557427 CCDC69A6NI79 296 aa14.28□□□□□ -0.12
SHMT2-230ENST00000557427 GOLGA6L22H0YM25 854 aa14.28□□□□□ -0.12
SHMT2-230ENST00000557427 ZBTB5O15062 677 aa14.28□□□□□ -0.12
SHMT2-230ENST00000557427 PI15O43692 258 aa14.28□□□□□ -0.12
SHMT2-230ENST00000557427 TRAK2O60296 914 aa14.28□□□□□ -0.12
SHMT2-230ENST00000557427 PPFIA3O75145 1194 aa14.28□□□□□ -0.12
SHMT2-230ENST00000557427 FRYLO94915 3013 aa14.28□□□□□ -0.12
SHMT2-230ENST00000557427 BAG4O95429 457 aaKnown RBP14.28□□□□□ -0.12
SHMT2-230ENST00000557427 CFBP00751 764 aa14.28□□□□□ -0.12
SHMT2-230ENST00000557427 LGALS2P05162 132 aa14.28□□□□□ -0.12
SHMT2-230ENST00000557427 MGAT3Q09327 533 aa14.28□□□□□ -0.12
SHMT2-230ENST00000557427 MTMR3Q13615 1198 aa14.28□□□□□ -0.12
SHMT2-230ENST00000557427 ANKRD1Q15327 319 aa14.28□□□□□ -0.12
SHMT2-230ENST00000557427 SKOR2Q2VWA4 1001 aaPredicted RBP14.28□□□□□ -0.12
SHMT2-230ENST00000557427 CWF19L1Q69YN2 538 aaKnown RBP14.28□□□□□ -0.12
SHMT2-230ENST00000557427 BLOC1S2Q6QNY1 142 aa14.28□□□□□ -0.12
SHMT2-230ENST00000557427 RAB11FIP4Q86YS3 637 aa14.28□□□□□ -0.12
SHMT2-230ENST00000557427 UBALD2Q8IYN6 164 aa14.28□□□□□ -0.12
SHMT2-230ENST00000557427 KIAA2013Q8IYS2 634 aa14.28□□□□□ -0.12
SHMT2-230ENST00000557427 CMTR2Q8IYT2 770 aaKnown RBP14.28□□□□□ -0.12
SHMT2-230ENST00000557427 ZNF654Q8IZM8 581 aa14.28□□□□□ -0.12
SHMT2-230ENST00000557427 ZFP91Q96JP5 570 aaPredicted RBP14.28□□□□□ -0.12
SHMT2-230ENST00000557427 NEK1Q96PY6 1258 aa14.28□□□□□ -0.12
SHMT2-230ENST00000557427 TELO2Q9Y4R8 837 aa14.28□□□□□ -0.12
SHMT2-230ENST00000557427 CFAP47Q6ZTR5 3102 aa14.27□□□□□ -0.12
SHMT2-230ENST00000557427 SH2B2O14492 632 aaPredicted RBP14.27□□□□□ -0.13
SHMT2-230ENST00000557427 CYTH3O43739 400 aa14.27□□□□□ -0.13
SHMT2-230ENST00000557427 PPP1R11O60927 126 aaPredicted RBP14.27□□□□□ -0.13
SHMT2-230ENST00000557427 RXRAP19793 462 aa14.27□□□□□ -0.13
SHMT2-230ENST00000557427 UBA1P22314 1058 aaKnown RBP14.27□□□□□ -0.13
SHMT2-230ENST00000557427 RPS6KB1P23443 525 aa14.27□□□□□ -0.13
SHMT2-230ENST00000557427 GATMP50440 423 aa14.27□□□□□ -0.13
SHMT2-230ENST00000557427 CLCN5P51795 746 aa14.27□□□□□ -0.13
SHMT2-230ENST00000557427 ERVFC1P60507 584 aa14.27□□□□□ -0.13
SHMT2-230ENST00000557427 PAN2Q504Q3 1202 aaKnown RBP14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms