RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 CTTNQ14247 550 aaKnown RBP12.86□□□□□ -0.35
CCDC88C-212ENST00000556767 ZNF484Q5JVG2 852 aa12.86□□□□□ -0.35
CCDC88C-212ENST00000556767 MFSD5Q6N075 450 aa12.86□□□□□ -0.35
CCDC88C-212ENST00000556767 TPH2Q8IWU9 490 aa12.86□□□□□ -0.35
CCDC88C-212ENST00000556767 CAGE1Q8TC20 777 aa12.86□□□□□ -0.35
CCDC88C-212ENST00000556767 ZBTB10Q96DT7 871 aa12.86□□□□□ -0.35
CCDC88C-212ENST00000556767 SCLYQ96I15 445 aa12.86□□□□□ -0.35
CCDC88C-212ENST00000556767 DYDC2Q96IM9 177 aa12.86□□□□□ -0.35
CCDC88C-212ENST00000556767 CTAGE1Q96RT6 745 aa12.86□□□□□ -0.35
CCDC88C-212ENST00000556767 UBE2OQ9C0C9 1292 aaKnown RBP12.86□□□□□ -0.35
CCDC88C-212ENST00000556767 RGL1Q9NZL6 768 aa12.86□□□□□ -0.35
CCDC88C-212ENST00000556767 SEPT9Q9UHD8 586 aaPredicted RBP12.86□□□□□ -0.35
CCDC88C-212ENST00000556767 CEP131Q9UPN4 1083 aa12.86□□□□□ -0.35
CCDC88C-212ENST00000556767 TRIP12Q14669 1992 aaPredicted RBP12.86□□□□□ -0.35
CCDC88C-212ENST00000556767 LAD1O00515 517 aa12.85□□□□□ -0.35
CCDC88C-212ENST00000556767 ZNF862O60290 1169 aa12.85□□□□□ -0.35
CCDC88C-212ENST00000556767 CSF2RAP15509 400 aa12.85□□□□□ -0.35
CCDC88C-212ENST00000556767 SPIRE1Q08AE8 756 aa12.85□□□□□ -0.35
CCDC88C-212ENST00000556767 FAM173BQ6P4H8 233 aa12.85□□□□□ -0.35
CCDC88C-212ENST00000556767 DTHD1Q6ZMT9 781 aa12.85□□□□□ -0.35
CCDC88C-212ENST00000556767 SERINC5Q86VE9 423 aa12.85□□□□□ -0.35
CCDC88C-212ENST00000556767 C4orf32Q8N8J7 132 aa12.85□□□□□ -0.35
CCDC88C-212ENST00000556767 ERMNQ8TAM6 284 aa12.85□□□□□ -0.35
CCDC88C-212ENST00000556767 DHX38Q92620 1227 aaKnown RBP12.85□□□□□ -0.35
CCDC88C-212ENST00000556767 WNT8BQ93098 351 aa12.85□□□□□ -0.35
CCDC88C-212ENST00000556767 EIF2AK1Q9BQI3 630 aaKnown RBP12.85□□□□□ -0.35
CCDC88C-212ENST00000556767 LXNQ9BS40 222 aa12.85□□□□□ -0.35
CCDC88C-212ENST00000556767 FAM49AQ9H0Q0 323 aaPredicted RBP12.85□□□□□ -0.35
CCDC88C-212ENST00000556767 ZSCAN16Q9H4T2 348 aaPredicted RBP12.85□□□□□ -0.35
CCDC88C-212ENST00000556767 COL1A2P08123 1366 aa12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 LTBP2Q14767 1821 aa12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 TMEM150BA6NC51 233 aa12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 PITPNM1O00562 1244 aa12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 CTSHP09668 335 aa12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 CKBP12277 381 aa12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 PDIA4P13667 645 aaKnown RBP12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 SELPP16109 830 aa12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 KLRC1P26715 233 aa12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 HOXC8P31273 242 aa12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 CEBPZQ03701 1054 aaKnown RBP12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 PPIGQ13427 754 aaKnown RBP eCLIP12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 SF3A1Q15459 793 aaKnown RBP12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 MTERF2Q49AM1 385 aa12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 XKR3Q5GH77 459 aa12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 MARCH8Q5T0T0 291 aa12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 TAF2Q6P1X5 1199 aa12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 MTHFD1LQ6UB35 978 aa12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 RUFY4Q6ZNE9 571 aa12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 LRRC8DQ7L1W4 858 aa12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 DEFB128Q7Z7B8 93 aa12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 RSPH3Q86UC2 560 aa12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 METTL13Q8N6R0 699 aa12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 DNAJB3Q8WWF6 145 aa12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 GDF15Q99988 308 aa12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 SH2D3AQ9BRG2 576 aa12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 RAB34Q9BZG1 259 aa12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 WNT8AQ9H1J5 351 aa12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 ZSWIM4Q9H7M6 989 aa12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 LRWD1Q9UFC0 647 aa12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 WDR81Q562E7 1941 aa12.84□□□□□ -0.35
CCDC88C-212ENST00000556767 MBLAC1A4D2B0 266 aaPredicted RBP12.83□□□□□ -0.36
CCDC88C-212ENST00000556767 SLITRK3O94933 977 aa12.83□□□□□ -0.36
CCDC88C-212ENST00000556767 BMP15O95972 392 aa12.83□□□□□ -0.36
CCDC88C-212ENST00000556767 IQCF3P0C7M6 154 aa12.83□□□□□ -0.36
CCDC88C-212ENST00000556767 ZSCAN22P10073 491 aaPredicted RBP12.83□□□□□ -0.36
CCDC88C-212ENST00000556767 ACRP10323 421 aa12.83□□□□□ -0.36
CCDC88C-212ENST00000556767 ADAM17P78536 824 aa12.83□□□□□ -0.36
CCDC88C-212ENST00000556767 ATP2C1P98194 919 aaPredicted RBP12.83□□□□□ -0.36
CCDC88C-212ENST00000556767 FOXD4L6Q3SYB3 417 aaPredicted RBP12.83□□□□□ -0.36
CCDC88C-212ENST00000556767 ZNF618Q5T7W0 954 aa12.83□□□□□ -0.36
CCDC88C-212ENST00000556767 PLA2G4FQ68DD2 849 aa12.83□□□□□ -0.36
CCDC88C-212ENST00000556767 FOXD4L3Q6VB84 417 aaPredicted RBP12.83□□□□□ -0.36
CCDC88C-212ENST00000556767 RPUSD2Q8IZ73 545 aaKnown RBP12.83□□□□□ -0.36
CCDC88C-212ENST00000556767 NEK9Q8TD19 979 aa12.83□□□□□ -0.36
CCDC88C-212ENST00000556767 CCDC43Q96MW1 224 aaKnown RBP12.83□□□□□ -0.36
CCDC88C-212ENST00000556767 FTOQ9C0B1 505 aaKnown RBP eCLIP12.83□□□□□ -0.36
CCDC88C-212ENST00000556767 SUGCTQ9HAC7 445 aa12.83□□□□□ -0.36
CCDC88C-212ENST00000556767 DAXXQ9UER7 740 aaPredicted RBP12.83□□□□□ -0.36
CCDC88C-212ENST00000556767 COLQQ9Y215 455 aaPredicted RBP12.83□□□□□ -0.36
CCDC88C-212ENST00000556767 PCDHA2Q9Y5H9 948 aa12.83□□□□□ -0.36
CCDC88C-212ENST00000556767 VWA3AA6NCI4 1184 aa12.82□□□□□ -0.36
CCDC88C-212ENST00000556767 RSPH10B2B2RC85 870 aa12.82□□□□□ -0.36
CCDC88C-212ENST00000556767 MAGEB2O15479 319 aa12.82□□□□□ -0.36
CCDC88C-212ENST00000556767 RSPH10BP0C881 870 aa12.82□□□□□ -0.36
CCDC88C-212ENST00000556767 YWHABP31946 246 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-212ENST00000556767 CCT6AP40227 531 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-212ENST00000556767 PRPHP41219 470 aa12.82□□□□□ -0.36
CCDC88C-212ENST00000556767 FXR2P51116 673 aaKnown RBP eCLIP12.82□□□□□ -0.36
CCDC88C-212ENST00000556767 TBC1D8BQ0IIM8 1120 aa12.82□□□□□ -0.36
CCDC88C-212ENST00000556767 TMEM62Q0P6H9 643 aa12.82□□□□□ -0.36
CCDC88C-212ENST00000556767 PKP1Q13835 747 aa12.82□□□□□ -0.36
CCDC88C-212ENST00000556767 TRIM71Q2Q1W2 868 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-212ENST00000556767 XKR9Q5GH70 373 aa12.82□□□□□ -0.36
CCDC88C-212ENST00000556767 HAUS3Q68CZ6 603 aa12.82□□□□□ -0.36
CCDC88C-212ENST00000556767 OTUD6AQ7L8S5 288 aa12.82□□□□□ -0.36
CCDC88C-212ENST00000556767 C4orf19Q8IY42 314 aa12.82□□□□□ -0.36
CCDC88C-212ENST00000556767 CEP170P1Q96L14 293 aa12.82□□□□□ -0.36
CCDC88C-212ENST00000556767 ZNF396Q96N95 335 aaPredicted RBP12.82□□□□□ -0.36
CCDC88C-212ENST00000556767 HSD17B14Q9BPX1 270 aa12.82□□□□□ -0.36
CCDC88C-212ENST00000556767 NIFKQ9BYG3 293 aaKnown RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms