RNA–Protein interactions for RNA: ENST00000556445.1

SRP54-211, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 530 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-211ENST00000556445 IGFBP6P24592 240 aaPredicted RBP6.37□□□□□ -1.39
SRP54-211ENST00000556445 NCKAP1LP55160 1127 aa6.37□□□□□ -1.39
SRP54-211ENST00000556445 PRR5P85299 388 aa6.37□□□□□ -1.39
SRP54-211ENST00000556445 ZNF200P98182 395 aaPredicted RBP6.37□□□□□ -1.39
SRP54-211ENST00000556445 UBE4AQ14139 1066 aa6.37□□□□□ -1.39
SRP54-211ENST00000556445 SF1Q15637 639 aaKnown RBP6.37□□□□□ -1.39
SRP54-211ENST00000556445 DDR2Q16832 855 aa6.37□□□□□ -1.39
SRP54-211ENST00000556445 INF2Q27J81 1249 aa6.37□□□□□ -1.39
SRP54-211ENST00000556445 ZNF385BQ569K4 471 aa6.37□□□□□ -1.39
SRP54-211ENST00000556445 EEPD1Q7L9B9 569 aa6.37□□□□□ -1.39
SRP54-211ENST00000556445 KREMEN2Q8NCW0 462 aa6.37□□□□□ -1.39
SRP54-211ENST00000556445 EPN3Q9H201 632 aa6.37□□□□□ -1.39
SRP54-211ENST00000556445 ST7Q9NRC1 585 aa6.37□□□□□ -1.39
SRP54-211ENST00000556445 LRP2BPQ9P2M1 347 aa6.37□□□□□ -1.39
SRP54-211ENST00000556445 RPS6KL1Q9Y6S9 549 aa6.37□□□□□ -1.39
SRP54-211ENST00000556445 KIF20BQ96Q89 1820 aa6.36□□□□□ -1.39
SRP54-211ENST00000556445 ZNF142P52746 1687 aaPredicted RBP6.36□□□□□ -1.39
SRP54-211ENST00000556445 ADAMTSL3P82987 1691 aa6.36□□□□□ -1.39
SRP54-211ENST00000556445 RIMS1Q86UR5 1692 aaKnown RBP6.36□□□□□ -1.39
SRP54-211ENST00000556445 CEP170BQ9Y4F5 1589 aaPredicted RBP6.36□□□□□ -1.39
SRP54-211ENST00000556445 CPSF1Q10570 1443 aaKnown RBP6.36□□□□□ -1.39
SRP54-211ENST00000556445 RFXAPO00287 272 aa6.36□□□□□ -1.39
SRP54-211ENST00000556445 HOXC12P31275 282 aa6.36□□□□□ -1.39
SRP54-211ENST00000556445 CCSAPQ6IQ19 270 aaPredicted RBP6.36□□□□□ -1.39
SRP54-211ENST00000556445 CCDC103Q8IW40 242 aa6.36□□□□□ -1.39
SRP54-211ENST00000556445 PRPF38AQ8NAV1 312 aaKnown RBP6.36□□□□□ -1.39
SRP54-211ENST00000556445 NETO2Q8NC67 525 aa6.36□□□□□ -1.39
SRP54-211ENST00000556445 PLEKHO2Q8TD55 490 aa6.36□□□□□ -1.39
SRP54-211ENST00000556445 RELTQ969Z4 430 aa6.36□□□□□ -1.39
SRP54-211ENST00000556445 DACT3Q96B18 629 aaPredicted RBP6.36□□□□□ -1.39
SRP54-211ENST00000556445 RUNDC1Q96C34 613 aa6.36□□□□□ -1.39
SRP54-211ENST00000556445 SCYL1Q96KG9 808 aa6.36□□□□□ -1.39
SRP54-211ENST00000556445 SLKQ9H2G2 1235 aaPredicted RBP6.36□□□□□ -1.39
SRP54-211ENST00000556445 RXFP1Q9HBX9 757 aa6.36□□□□□ -1.39
SRP54-211ENST00000556445 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.36□□□□□ -1.39
SRP54-211ENST00000556445 TMEFF2Q9UIK5 374 aaPredicted RBP6.36□□□□□ -1.39
SRP54-211ENST00000556445 THRAP3Q9Y2W1 955 aaKnown RBP6.36□□□□□ -1.39
SRP54-211ENST00000556445 CDC42BPGQ6DT37 1551 aa6.35□□□□□ -1.39
SRP54-211ENST00000556445 CD163L1Q9NR16 1453 aa6.35□□□□□ -1.39
SRP54-211ENST00000556445 PPIP5K1Q6PFW1 1433 aa6.35□□□□□ -1.39
SRP54-211ENST00000556445 FYB1O15117 783 aa6.35□□□□□ -1.39
SRP54-211ENST00000556445 WDHD1O75717 1129 aaPredicted RBP6.35□□□□□ -1.39
SRP54-211ENST00000556445 SNRPB2P08579 225 aaKnown RBP6.35□□□□□ -1.39
SRP54-211ENST00000556445 MTHFSP49914 203 aa6.35□□□□□ -1.39
SRP54-211ENST00000556445 GFRA1P56159 465 aa6.35□□□□□ -1.39
SRP54-211ENST00000556445 TESK1Q15569 626 aa6.35□□□□□ -1.39
SRP54-211ENST00000556445 PRSS53Q2L4Q9 553 aa6.35□□□□□ -1.39
SRP54-211ENST00000556445 MAP9Q49MG5 647 aa6.35□□□□□ -1.39
SRP54-211ENST00000556445 DENND5AQ6IQ26 1287 aa6.35□□□□□ -1.39
SRP54-211ENST00000556445 KRBA2Q6ZNG9 492 aa6.35□□□□□ -1.39
SRP54-211ENST00000556445 FAM129CQ86XR2 697 aa6.35□□□□□ -1.39
SRP54-211ENST00000556445 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.35□□□□□ -1.39
SRP54-211ENST00000556445 TSPAN17Q96FV3 270 aa6.35□□□□□ -1.39
SRP54-211ENST00000556445 C1orf159Q96HA4 380 aa6.35□□□□□ -1.39
SRP54-211ENST00000556445 SRPK1Q96SB4 655 aaKnown RBP6.35□□□□□ -1.39
SRP54-211ENST00000556445 SIRPGQ9P1W8 387 aa6.35□□□□□ -1.39
SRP54-211ENST00000556445 RCAN3Q9UKA8 241 aa6.35□□□□□ -1.39
SRP54-211ENST00000556445 R3HCC1Q9Y3T6 440 aaKnown RBP6.35□□□□□ -1.39
SRP54-211ENST00000556445 ITSN1Q15811 1721 aa6.35□□□□□ -1.39
SRP54-211ENST00000556445 PLEKHH1Q9ULM0 1364 aa6.34□□□□□ -1.39
SRP54-211ENST00000556445 BUB1BO60566 1050 aaPredicted RBP6.34□□□□□ -1.39
SRP54-211ENST00000556445 CDC45O75419 566 aa6.34□□□□□ -1.39
SRP54-211ENST00000556445 FUCA1P04066 466 aa6.34□□□□□ -1.39
SRP54-211ENST00000556445 ECI1P42126 302 aa6.34□□□□□ -1.39
SRP54-211ENST00000556445 GRIA2P42262 883 aa6.34□□□□□ -1.39
SRP54-211ENST00000556445 RAB33AQ14088 237 aa6.34□□□□□ -1.39
SRP54-211ENST00000556445 ACBD5Q5T8D3 534 aaPredicted RBP6.34□□□□□ -1.39
SRP54-211ENST00000556445 LCE4AQ5TA78 99 aa6.34□□□□□ -1.39
SRP54-211ENST00000556445 E4F1Q66K89 784 aaPredicted RBP6.34□□□□□ -1.39
SRP54-211ENST00000556445 WWC2Q6AWC2 1192 aa6.34□□□□□ -1.39
SRP54-211ENST00000556445 FERMT3Q86UX7 667 aa6.34□□□□□ -1.39
SRP54-211ENST00000556445 CABP7Q86V35 215 aa6.34□□□□□ -1.39
SRP54-211ENST00000556445 TMEM145Q8NBT3 493 aa6.34□□□□□ -1.39
SRP54-211ENST00000556445 SLC39A13Q96H72 371 aa6.34□□□□□ -1.39
SRP54-211ENST00000556445 CCDC140Q96MF4 163 aa6.34□□□□□ -1.39
SRP54-211ENST00000556445 FANCLQ9NW38 375 aa6.34□□□□□ -1.39
SRP54-211ENST00000556445 TCEAL9Q9UHQ7 104 aa6.34□□□□□ -1.39
SRP54-211ENST00000556445 COMMD10Q9Y6G5 202 aa6.34□□□□□ -1.39
SRP54-211ENST00000556445 AKAP12Q02952 1782 aa6.34□□□□□ -1.4
SRP54-211ENST00000556445 ANKARQ7Z5J8 1434 aa6.33□□□□□ -1.4
SRP54-211ENST00000556445 MON2Q7Z3U7 1717 aa6.33□□□□□ -1.4
SRP54-211ENST00000556445 AATKQ6ZMQ8 1374 aa6.33□□□□□ -1.4
SRP54-211ENST00000556445 TTC21AQ8NDW8 1320 aa6.33□□□□□ -1.4
SRP54-211ENST00000556445 ZNF521Q96K83 1311 aa6.33□□□□□ -1.4
SRP54-211ENST00000556445 A0A1W2PQU0 124 aa6.33□□□□□ -1.4
SRP54-211ENST00000556445 CCDC189A1A4V9 331 aa6.33□□□□□ -1.4
SRP54-211ENST00000556445 APAF1O14727 1248 aa6.33□□□□□ -1.4
SRP54-211ENST00000556445 CPP00450 1065 aa6.33□□□□□ -1.4
SRP54-211ENST00000556445 NTRK1P04629 796 aa6.33□□□□□ -1.4
SRP54-211ENST00000556445 ATF2P15336 505 aa6.33□□□□□ -1.4
SRP54-211ENST00000556445 PPP2R2AP63151 447 aa6.33□□□□□ -1.4
SRP54-211ENST00000556445 RBM10P98175 930 aaKnown RBP6.33□□□□□ -1.4
SRP54-211ENST00000556445 SLC35F1Q5T1Q4 408 aa6.33□□□□□ -1.4
SRP54-211ENST00000556445 IQCEQ6IPM2 695 aa6.33□□□□□ -1.4
SRP54-211ENST00000556445 CNKSR3Q6P9H4 555 aa6.33□□□□□ -1.4
SRP54-211ENST00000556445 KIAA0907Q7Z7F0 614 aaPredicted RBP6.33□□□□□ -1.4
SRP54-211ENST00000556445 WDR63Q8IWG1 891 aa6.33□□□□□ -1.4
SRP54-211ENST00000556445 Q8N1Y9 231 aa6.33□□□□□ -1.4
SRP54-211ENST00000556445 IL17RAQ96F46 866 aa6.33□□□□□ -1.4
SRP54-211ENST00000556445 COG3Q96JB2 828 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms