RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 ZNF668Q96K58 619 aaPredicted RBP16.19■□□□□ 0.18
CUX1-215ENST00000556210 RAVER2Q9HCJ3 691 aaKnown RBP16.19■□□□□ 0.18
CUX1-215ENST00000556210 KNOP1Q1ED39 458 aaKnown RBP16.19■□□□□ 0.18
CUX1-215ENST00000556210 CAPN12Q6ZSI9 719 aa16.19■□□□□ 0.18
CUX1-215ENST00000556210 ELOA2Q8IYF1 753 aaPredicted RBP16.19■□□□□ 0.18
CUX1-215ENST00000556210 FGFBP2Q9BYJ0 223 aa16.19■□□□□ 0.18
CUX1-215ENST00000556210 LARSQ9P2J5 1176 aaKnown RBP16.19■□□□□ 0.18
CUX1-215ENST00000556210 ATRNO75882 1429 aa16.19■□□□□ 0.18
CUX1-215ENST00000556210 PDXDC1Q6P996 788 aa16.18■□□□□ 0.18
CUX1-215ENST00000556210 B4GALNT4Q76KP1 1039 aa16.18■□□□□ 0.18
CUX1-215ENST00000556210 CCDC91Q7Z6B0 441 aa16.18■□□□□ 0.18
CUX1-215ENST00000556210 CCDC105Q8IYK2 499 aa16.18■□□□□ 0.18
CUX1-215ENST00000556210 MGARPQ8TDB4 240 aa16.18■□□□□ 0.18
CUX1-215ENST00000556210 STK32BQ9NY57 414 aa16.18■□□□□ 0.18
CUX1-215ENST00000556210 SNX12Q9UMY4 172 aa16.18■□□□□ 0.18
CUX1-215ENST00000556210 E7EVH7 732 aa16.18■□□□□ 0.18
CUX1-215ENST00000556210 FOSP01100 380 aaPredicted RBP16.18■□□□□ 0.18
CUX1-215ENST00000556210 KRT14P02533 472 aa16.18■□□□□ 0.18
CUX1-215ENST00000556210 TNNI1P19237 187 aa16.18■□□□□ 0.18
CUX1-215ENST00000556210 SHMT1P34896 483 aa16.18■□□□□ 0.18
CUX1-215ENST00000556210 PEX3P56589 373 aa16.18■□□□□ 0.18
CUX1-215ENST00000556210 ECM1Q16610 540 aa16.18■□□□□ 0.18
CUX1-215ENST00000556210 CPLX4Q7Z7G2 160 aa16.18■□□□□ 0.18
CUX1-215ENST00000556210 COL23A1Q86Y22 540 aaPredicted RBP16.18■□□□□ 0.18
CUX1-215ENST00000556210 TMEM39BQ9GZU3 492 aa16.18■□□□□ 0.18
CUX1-215ENST00000556210 ATP8A1Q9Y2Q0 1164 aa16.18■□□□□ 0.18
CUX1-215ENST00000556210 CTNNA2P26232 953 aa16.18■□□□□ 0.18
CUX1-215ENST00000556210 SLCO1A2P46721 670 aa16.18■□□□□ 0.18
CUX1-215ENST00000556210 TADA2BQ86TJ2 420 aa16.18■□□□□ 0.18
CUX1-215ENST00000556210 NIM1KQ8IY84 436 aa16.18■□□□□ 0.18
CUX1-215ENST00000556210 TEKT3Q9BXF9 490 aa16.18■□□□□ 0.18
CUX1-215ENST00000556210 STIM2Q9P246 746 aa16.18■□□□□ 0.18
CUX1-215ENST00000556210 PSMC2P35998 433 aaKnown RBP16.17■□□□□ 0.18
CUX1-215ENST00000556210 PSMD2Q13200 908 aa16.17■□□□□ 0.18
CUX1-215ENST00000556210 GSTA5Q7RTV2 222 aa16.17■□□□□ 0.18
CUX1-215ENST00000556210 FNBP1Q96RU3 617 aa16.17■□□□□ 0.18
CUX1-215ENST00000556210 MMTAG2Q9BU76 263 aaKnown RBP16.17■□□□□ 0.18
CUX1-215ENST00000556210 NUCKS1Q9H1E3 243 aaKnown RBP16.17■□□□□ 0.18
CUX1-215ENST00000556210 DNAJC12Q9UKB3 198 aa16.17■□□□□ 0.18
CUX1-215ENST00000556210 UTP11Q9Y3A2 253 aaKnown RBP16.17■□□□□ 0.18
CUX1-215ENST00000556210 MRPL11Q9Y3B7 192 aaKnown RBP16.17■□□□□ 0.18
CUX1-215ENST00000556210 KIF1AQ12756 1690 aa16.17■□□□□ 0.18
CUX1-215ENST00000556210 COL1A1P02452 1464 aaPredicted RBP16.17■□□□□ 0.18
CUX1-215ENST00000556210 CYP11B2P19099 503 aa16.17■□□□□ 0.18
CUX1-215ENST00000556210 SNX1Q13596 522 aa16.17■□□□□ 0.18
CUX1-215ENST00000556210 PDIA5Q14554 519 aa16.17■□□□□ 0.18
CUX1-215ENST00000556210 MSANTD4Q8NCY6 345 aa16.17■□□□□ 0.18
CUX1-215ENST00000556210 FAM53CQ9NYF3 392 aa16.17■□□□□ 0.18
CUX1-215ENST00000556210 PRR12Q9ULL5 1215 aa16.17■□□□□ 0.18
CUX1-215ENST00000556210 TULP2O00295 520 aa16.17■□□□□ 0.18
CUX1-215ENST00000556210 PDE2AO00408 941 aaPredicted RBP16.17■□□□□ 0.18
CUX1-215ENST00000556210 GRIPAP1Q4V328 841 aa16.17■□□□□ 0.18
CUX1-215ENST00000556210 ARHGEF16Q5VV41 709 aa16.17■□□□□ 0.18
CUX1-215ENST00000556210 CCDC26Q8TAB7 109 aa16.17■□□□□ 0.18
CUX1-215ENST00000556210 CNKSR1Q969H4 720 aa16.17■□□□□ 0.18
CUX1-215ENST00000556210 KCNK9Q9NPC2 374 aa16.17■□□□□ 0.18
CUX1-215ENST00000556210 ATF5Q9Y2D1 282 aaPredicted RBP16.17■□□□□ 0.18
CUX1-215ENST00000556210 REXO2Q9Y3B8 237 aaKnown RBP16.17■□□□□ 0.18
CUX1-215ENST00000556210 PLTPP55058 493 aa16.16■□□□□ 0.18
CUX1-215ENST00000556210 BCAS3Q9H6U6 928 aa16.16■□□□□ 0.18
CUX1-215ENST00000556210 CEP72Q9P209 647 aa16.16■□□□□ 0.18
CUX1-215ENST00000556210 PLAGL2Q9UPG8 496 aa16.16■□□□□ 0.18
CUX1-215ENST00000556210 MAP2K7O14733 419 aa16.16■□□□□ 0.18
CUX1-215ENST00000556210 MYL7Q01449 175 aa16.16■□□□□ 0.18
CUX1-215ENST00000556210 PTK2Q05397 1052 aa16.16■□□□□ 0.18
CUX1-215ENST00000556210 TRIP13Q15645 432 aaPredicted RBP16.16■□□□□ 0.18
CUX1-215ENST00000556210 LRRC31Q6UY01 552 aa16.16■□□□□ 0.18
CUX1-215ENST00000556210 MTMR8Q96EF0 704 aa16.16■□□□□ 0.18
CUX1-215ENST00000556210 SAAL1Q96ER3 474 aa16.16■□□□□ 0.18
CUX1-215ENST00000556210 RIOX1Q9H6W3 641 aa16.16■□□□□ 0.18
CUX1-215ENST00000556210 ADRA2BP18089 450 aa16.16■□□□□ 0.18
CUX1-215ENST00000556210 CARSP49589 748 aaKnown RBP16.16■□□□□ 0.18
CUX1-215ENST00000556210 CASP5P51878 434 aa16.16■□□□□ 0.18
CUX1-215ENST00000556210 TRAF1Q13077 416 aa16.16■□□□□ 0.18
CUX1-215ENST00000556210 LMBRD2Q68DH5 695 aaPredicted RBP16.16■□□□□ 0.18
CUX1-215ENST00000556210 CENPPQ6IPU0 288 aa16.16■□□□□ 0.18
CUX1-215ENST00000556210 CCDC121Q6ZUS5 278 aa16.16■□□□□ 0.18
CUX1-215ENST00000556210 OR2W6PQ8NHA6 318 aa16.16■□□□□ 0.18
CUX1-215ENST00000556210 DNAJC7Q99615 494 aa16.16■□□□□ 0.18
CUX1-215ENST00000556210 FAM169AQ9Y6X4 670 aa16.16■□□□□ 0.18
CUX1-215ENST00000556210 FGGP02679 453 aa16.16■□□□□ 0.18
CUX1-215ENST00000556210 SMTNP53814 917 aa16.16■□□□□ 0.18
CUX1-215ENST00000556210 MAP2K1Q02750 393 aaPredicted RBP16.16■□□□□ 0.18
CUX1-215ENST00000556210 EN1Q05925 392 aaPredicted RBP16.16■□□□□ 0.18
CUX1-215ENST00000556210 CRAMP1Q96RY5 1269 aa16.16■□□□□ 0.18
CUX1-215ENST00000556210 RUSC1Q9BVN2 902 aa16.16■□□□□ 0.18
CUX1-215ENST00000556210 SH2D4AQ9H788 454 aa16.16■□□□□ 0.18
CUX1-215ENST00000556210 ASIC3Q9UHC3 531 aa16.16■□□□□ 0.18
CUX1-215ENST00000556210 AMACRQ9UHK6 382 aa16.16■□□□□ 0.18
CUX1-215ENST00000556210 FAM184BQ9ULE4 1060 aa16.16■□□□□ 0.18
CUX1-215ENST00000556210 SLC16A4O15374 487 aa16.15■□□□□ 0.18
CUX1-215ENST00000556210 POMGNT1Q8WZA1 660 aa16.15■□□□□ 0.18
CUX1-215ENST00000556210 METTL14Q9HCE5 456 aaKnown RBP16.15■□□□□ 0.18
CUX1-215ENST00000556210 ANKRD62A6NC57 917 aa16.15■□□□□ 0.18
CUX1-215ENST00000556210 hCG_1984214I3L0E3 225 aa16.15■□□□□ 0.18
CUX1-215ENST00000556210 MYZAPP0CAP1 466 aa16.15■□□□□ 0.18
CUX1-215ENST00000556210 BCRP11274 1271 aa16.15■□□□□ 0.18
CUX1-215ENST00000556210 NNTQ13423 1086 aa16.15■□□□□ 0.18
CUX1-215ENST00000556210 APTXQ7Z2E3 356 aaKnown RBP16.15■□□□□ 0.18
CUX1-215ENST00000556210 NLRX1Q86UT6 975 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms