RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 LDHAP00338 332 aaKnown RBP8.88□□□□□ -0.99
SYNE2-220ENST00000555612 ALCAMQ13740 583 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 DARS2Q6PI48 645 aaKnown RBP8.88□□□□□ -0.99
SYNE2-220ENST00000555612 AFG1LQ8WV93 481 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 INO80Q9ULG1 1556 aaPredicted RBP8.88□□□□□ -0.99
SYNE2-220ENST00000555612 BCORL1Q5H9F3 1711 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 MCF2LO15068 1137 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 SLC16A4O15374 487 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 C6orf222P0C671 652 aaPredicted RBP8.88□□□□□ -0.99
SYNE2-220ENST00000555612 SLFN14P0C7P3 912 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 AKR1B1P15121 316 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 ELF2Q15723 593 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 QRICH1Q2TAL8 776 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 TMTC4Q5T4D3 741 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 MARCH10Q8NA82 808 aaPredicted RBP8.88□□□□□ -0.99
SYNE2-220ENST00000555612 GCOM2Q9BZD3 368 aaPredicted RBP8.88□□□□□ -0.99
SYNE2-220ENST00000555612 TXNP10599 105 aaKnown RBP8.88□□□□□ -0.99
SYNE2-220ENST00000555612 CPB1P15086 417 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 COPB2P35606 906 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 IQCB1Q15051 598 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 FAM117BQ6P1L5 589 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 BEST2Q8NFU1 509 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 CRAMP1Q96RY5 1269 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 ISCA1Q9BUE6 129 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 HERC5Q9UII4 1024 aaKnown RBP8.88□□□□□ -0.99
SYNE2-220ENST00000555612 MED14O60244 1454 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 LRRD1A4D1F6 860 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 NEMP1O14524 444 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 CTSHP09668 335 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 THOC5Q13769 683 aaKnown RBP8.88□□□□□ -0.99
SYNE2-220ENST00000555612 TEX2Q8IWB9 1127 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 MXD3Q9BW11 206 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 PASKQ96RG2 1323 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 EEF1GP26641 437 aaKnown RBP8.88□□□□□ -0.99
SYNE2-220ENST00000555612 HINFPQ9BQA5 517 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 PSMD14O00487 310 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 UPP2O95045 317 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 GOLGA8FQ08AF8 430 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 GOLGA8DPQ0D2H9 430 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 PSMD2Q13200 908 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 ALKBH8Q96BT7 664 aaKnown RBP8.88□□□□□ -0.99
SYNE2-220ENST00000555612 TTC25Q96NG3 672 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 MRPL47Q9HD33 250 aaKnown RBP8.88□□□□□ -0.99
SYNE2-220ENST00000555612 SH3GLB2Q9NR46 395 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 PPP2R2CQ9Y2T4 447 aa8.88□□□□□ -0.99
SYNE2-220ENST00000555612 DYNC1LI2O43237 492 aaPredicted RBP8.87□□□□□ -0.99
SYNE2-220ENST00000555612 ARHGAP4P98171 946 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 JADE1Q6IE81 842 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 ADGRF4Q8IZF3 695 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 NGRNQ9NPE2 291 aaKnown RBP8.87□□□□□ -0.99
SYNE2-220ENST00000555612 TYW1Q9NV66 732 aaKnown RBP8.87□□□□□ -0.99
SYNE2-220ENST00000555612 EPN1Q9Y6I3 576 aaPredicted RBP8.87□□□□□ -0.99
SYNE2-220ENST00000555612 CCL15-CCL14A0A0B4J2E2 113 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 CPP00450 1065 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 CCL15Q16663 113 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 STRIP1Q5VSL9 837 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 ERICH1Q86X53 443 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 BBOF1Q8ND07 529 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 FAM213AQ9BRX8 229 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 NUF2Q9BZD4 464 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 ZWILCHQ9H900 591 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 C1orf167Q5SNV9 1468 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 NBPF26B4DH59 902 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 BASP1P80723 227 aaKnown RBP8.87□□□□□ -0.99
SYNE2-220ENST00000555612 SLC15A2Q16348 729 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 PPP2R5EQ16537 467 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 NBPF10Q6P3W6 841 aaKnown RBP8.87□□□□□ -0.99
SYNE2-220ENST00000555612 RAB44Q7Z6P3 723 aaPredicted RBP8.87□□□□□ -0.99
SYNE2-220ENST00000555612 YAF2Q8IY57 180 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 NBPF15Q8N660 670 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 POLR3FQ9H1D9 316 aaPredicted RBP8.87□□□□□ -0.99
SYNE2-220ENST00000555612 HAUS4Q9H6D7 363 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 PPME1Q9Y570 386 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 POC1B-GALNT4F8VUJ3 575 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 GPC3P51654 580 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 ZNF699Q32M78 642 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 LDHDQ86WU2 507 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 TSC1Q92574 1164 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 HSPH1Q92598 858 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 MAN1B1Q9UKM7 699 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 E9PMD0 336 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 TROVE2P10155 538 aaKnown RBP eCLIP8.87□□□□□ -0.99
SYNE2-220ENST00000555612 SFR1Q86XK3 245 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 ZNF70Q9UC06 446 aaPredicted RBP8.87□□□□□ -0.99
SYNE2-220ENST00000555612 DAGLAQ9Y4D2 1042 aa8.87□□□□□ -0.99
SYNE2-220ENST00000555612 SOX5P35711 763 aa8.86□□□□□ -0.99
SYNE2-220ENST00000555612 CASP2P42575 452 aa8.86□□□□□ -0.99
SYNE2-220ENST00000555612 SLC12A1Q13621 1099 aa8.86□□□□□ -0.99
SYNE2-220ENST00000555612 CYB5R4Q7L1T6 521 aa8.86□□□□□ -0.99
SYNE2-220ENST00000555612 SAMD7Q7Z3H4 446 aa8.86□□□□□ -0.99
SYNE2-220ENST00000555612 ENAHQ8N8S7 591 aaPredicted RBP8.86□□□□□ -0.99
SYNE2-220ENST00000555612 PDCD6IPQ8WUM4 868 aaKnown RBP8.86□□□□□ -0.99
SYNE2-220ENST00000555612 MAGOHBQ96A72 148 aaKnown RBP8.86□□□□□ -0.99
SYNE2-220ENST00000555612 EFCC1Q9HA90 598 aa8.86□□□□□ -0.99
SYNE2-220ENST00000555612 INHBAP08476 426 aa8.86□□□□□ -0.99
SYNE2-220ENST00000555612 NFKBIAP25963 317 aa8.86□□□□□ -0.99
SYNE2-220ENST00000555612 SFNP31947 248 aa8.86□□□□□ -0.99
SYNE2-220ENST00000555612 COG2Q14746 738 aa8.86□□□□□ -0.99
SYNE2-220ENST00000555612 PPP1R2P3Q6NXS1 205 aa8.86□□□□□ -0.99
SYNE2-220ENST00000555612 NDUFAF2Q8N183 169 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms