RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 NKX2-4Q9H2Z4 354 aa23.19■■□□□ 1.3
VTI1B-205ENST00000555543 ZNF576Q9H609 170 aa23.19■■□□□ 1.3
VTI1B-205ENST00000555543 DDX25Q9UHL0 483 aaKnown RBP23.19■■□□□ 1.3
VTI1B-205ENST00000555543 TCEAL9Q9UHQ7 104 aa23.19■■□□□ 1.3
VTI1B-205ENST00000555543 PCDHA10Q9Y5I2 948 aa23.19■■□□□ 1.3
VTI1B-205ENST00000555543 MAFBQ9Y5Q3 323 aaPredicted RBP23.19■■□□□ 1.3
VTI1B-205ENST00000555543 IGSF9BQ9UPX0 1349 aa23.18■■□□□ 1.3
VTI1B-205ENST00000555543 WDR64B1ANS9 1081 aa23.18■■□□□ 1.3
VTI1B-205ENST00000555543 ZBTB42B2RXF5 422 aa23.18■■□□□ 1.3
VTI1B-205ENST00000555543 CHRNA1P02708 482 aa23.18■■□□□ 1.3
VTI1B-205ENST00000555543 MMP1P03956 469 aa23.18■■□□□ 1.3
VTI1B-205ENST00000555543 PSAPP07602 524 aa23.18■■□□□ 1.3
VTI1B-205ENST00000555543 DEFB103AP81534 67 aa23.18■■□□□ 1.3
VTI1B-205ENST00000555543 MGAT3Q09327 533 aa23.18■■□□□ 1.3
VTI1B-205ENST00000555543 PLEKHG4Q58EX7 1191 aa23.18■■□□□ 1.3
VTI1B-205ENST00000555543 KRT40Q6A162 431 aa23.18■■□□□ 1.3
VTI1B-205ENST00000555543 TMCO2Q7Z6W1 182 aaPredicted RBP23.18■■□□□ 1.3
VTI1B-205ENST00000555543 TEKT3Q9BXF9 490 aa23.18■■□□□ 1.3
VTI1B-205ENST00000555543 FAM49AQ9H0Q0 323 aaPredicted RBP23.18■■□□□ 1.3
VTI1B-205ENST00000555543 DISC1Q9NRI5 854 aa23.18■■□□□ 1.3
VTI1B-205ENST00000555543 GABBR1Q9UBS5 961 aa23.18■■□□□ 1.3
VTI1B-205ENST00000555543 MSRAQ9UJ68 235 aa23.18■■□□□ 1.3
VTI1B-205ENST00000555543 SAMM50Q9Y512 469 aa23.18■■□□□ 1.3
VTI1B-205ENST00000555543 EYSQ5T1H1 3165 aa23.18■■□□□ 1.3
VTI1B-205ENST00000555543 HBP1O60381 514 aa23.17■■□□□ 1.3
VTI1B-205ENST00000555543 MKRN4PQ13434 485 aaPredicted RBP23.17■■□□□ 1.3
VTI1B-205ENST00000555543 GRIN2CQ14957 1233 aa23.17■■□□□ 1.3
VTI1B-205ENST00000555543 RABEP1Q15276 862 aa23.17■■□□□ 1.3
VTI1B-205ENST00000555543 UGCGQ16739 394 aa23.17■■□□□ 1.3
VTI1B-205ENST00000555543 B3GNT9Q6UX72 402 aa23.17■■□□□ 1.3
VTI1B-205ENST00000555543 HERC6Q8IVU3 1022 aa23.17■■□□□ 1.3
VTI1B-205ENST00000555543 ZSCAN31Q96LW9 406 aaPredicted RBP23.17■■□□□ 1.3
VTI1B-205ENST00000555543 STXBP5LQ9Y2K9 1186 aa23.17■■□□□ 1.3
VTI1B-205ENST00000555543 PCDHA11Q9Y5I1 949 aa23.17■■□□□ 1.3
VTI1B-205ENST00000555543 WDR81Q562E7 1941 aa23.17■■□□□ 1.3
VTI1B-205ENST00000555543 ABHD14A-ACY1A0A1B0GW23 586 aa23.16■■□□□ 1.3
VTI1B-205ENST00000555543 BTBD18B2RXH4 712 aa23.16■■□□□ 1.3
VTI1B-205ENST00000555543 ZNF862O60290 1169 aa23.16■■□□□ 1.3
VTI1B-205ENST00000555543 KCNJ6P48051 423 aa23.16■■□□□ 1.3
VTI1B-205ENST00000555543 IKBKEQ14164 716 aa23.16■■□□□ 1.3
VTI1B-205ENST00000555543 MTHFD1LQ6UB35 978 aa23.16■■□□□ 1.3
VTI1B-205ENST00000555543 TRMT1LQ7Z2T5 733 aaKnown RBP23.16■■□□□ 1.3
VTI1B-205ENST00000555543 CKAP2LQ8IYA6 745 aa23.16■■□□□ 1.3
VTI1B-205ENST00000555543 DIS3L2Q8IYB7 885 aaKnown RBP23.16■■□□□ 1.3
VTI1B-205ENST00000555543 PHOSPHO2Q8TCD6 241 aa23.16■■□□□ 1.3
VTI1B-205ENST00000555543 MYLIPQ8WY64 445 aa23.16■■□□□ 1.3
VTI1B-205ENST00000555543 TNPO1Q92973 898 aaKnown RBP23.16■■□□□ 1.3
VTI1B-205ENST00000555543 KCNMB3Q9NPA1 279 aa23.16■■□□□ 1.3
VTI1B-205ENST00000555543 SH2B1Q9NRF2 756 aaPredicted RBP23.16■■□□□ 1.3
VTI1B-205ENST00000555543 PCDHA2Q9Y5H9 948 aa23.16■■□□□ 1.3
VTI1B-205ENST00000555543 MICAL3Q7RTP6 2002 aa23.16■■□□□ 1.3
VTI1B-205ENST00000555543 MYH9P35579 1960 aaKnown RBP23.16■■□□□ 1.3
VTI1B-205ENST00000555543 CCNT1O60563 726 aaKnown RBP23.15■■□□□ 1.3
VTI1B-205ENST00000555543 PPP4R3AQ6IN85 833 aa23.15■■□□□ 1.3
VTI1B-205ENST00000555543 RSPH3Q86UC2 560 aa23.15■■□□□ 1.3
VTI1B-205ENST00000555543 LLPHQ9BRT6 129 aaKnown RBP23.15■■□□□ 1.3
VTI1B-205ENST00000555543 BRMS1Q9HCU9 246 aa23.15■■□□□ 1.3
VTI1B-205ENST00000555543 CDY2AQ9Y6F7 541 aa23.15■■□□□ 1.3
VTI1B-205ENST00000555543 COL1A2P08123 1366 aa23.14■■□□□ 1.3
VTI1B-205ENST00000555543 ARHGEF15O94989 841 aa23.14■■□□□ 1.29
VTI1B-205ENST00000555543 CD2BP2O95400 341 aaKnown RBP23.14■■□□□ 1.29
VTI1B-205ENST00000555543 GHRP10912 638 aa23.14■■□□□ 1.29
VTI1B-205ENST00000555543 GCFC2P16383 781 aaKnown RBP23.14■■□□□ 1.29
VTI1B-205ENST00000555543 KLRC1P26715 233 aa23.14■■□□□ 1.29
VTI1B-205ENST00000555543 SFNP31947 248 aa23.14■■□□□ 1.29
VTI1B-205ENST00000555543 JAK3P52333 1124 aa23.14■■□□□ 1.29
VTI1B-205ENST00000555543 MRPS6P82932 125 aaKnown RBP23.14■■□□□ 1.29
VTI1B-205ENST00000555543 GUCY1B3Q02153 619 aa23.14■■□□□ 1.29
VTI1B-205ENST00000555543 LIN28BQ6ZN17 250 aaKnown RBP eCLIP23.14■■□□□ 1.29
VTI1B-205ENST00000555543 POTEDQ86YR6 584 aa23.14■■□□□ 1.29
VTI1B-205ENST00000555543 BBXQ8WY36 941 aaPredicted RBP23.14■■□□□ 1.29
VTI1B-205ENST00000555543 SEPT8Q92599 483 aa23.14■■□□□ 1.29
VTI1B-205ENST00000555543 TBC1D32Q96NH3 1257 aa23.14■■□□□ 1.29
VTI1B-205ENST00000555543 UPF2Q9HAU5 1272 aaKnown RBP23.14■■□□□ 1.29
VTI1B-205ENST00000555543 SMIM35A0A1B0GVV1 85 aa23.13■■□□□ 1.29
VTI1B-205ENST00000555543 WNT7AO00755 349 aa23.13■■□□□ 1.29
VTI1B-205ENST00000555543 C22orf31O95567 290 aa23.13■■□□□ 1.29
VTI1B-205ENST00000555543 CA3P07451 260 aa23.13■■□□□ 1.29
VTI1B-205ENST00000555543 PRKCEQ02156 737 aa23.13■■□□□ 1.29
VTI1B-205ENST00000555543 TMEM62Q0P6H9 643 aa23.13■■□□□ 1.29
VTI1B-205ENST00000555543 TRIM29Q14134 588 aa23.13■■□□□ 1.29
VTI1B-205ENST00000555543 LPIN1Q14693 890 aa23.13■■□□□ 1.29
VTI1B-205ENST00000555543 ZNF484Q5JVG2 852 aa23.13■■□□□ 1.29
VTI1B-205ENST00000555543 MIER3Q7Z3K6 550 aa23.13■■□□□ 1.29
VTI1B-205ENST00000555543 IFIH1Q9BYX4 1025 aaKnown RBP23.13■■□□□ 1.29
VTI1B-205ENST00000555543 SLC28A3Q9HAS3 691 aa23.13■■□□□ 1.29
VTI1B-205ENST00000555543 VAV3Q9UKW4 847 aa23.13■■□□□ 1.29
VTI1B-205ENST00000555543 EFCAB14O75071 495 aa23.12■■□□□ 1.29
VTI1B-205ENST00000555543 FBXO47Q5MNV8 452 aa23.12■■□□□ 1.29
VTI1B-205ENST00000555543 PPP2R2DQ66LE6 453 aa23.12■■□□□ 1.29
VTI1B-205ENST00000555543 RDM1Q8NG50 284 aa23.12■■□□□ 1.29
VTI1B-205ENST00000555543 HAS1Q92839 578 aa23.12■■□□□ 1.29
VTI1B-205ENST00000555543 TRANK1O15050 2925 aa23.12■■□□□ 1.29
VTI1B-205ENST00000555543 EML1O00423 815 aa23.11■■□□□ 1.29
VTI1B-205ENST00000555543 OATP04181 439 aa23.11■■□□□ 1.29
VTI1B-205ENST00000555543 KIAA0319LQ8IZA0 1049 aa23.11■■□□□ 1.29
VTI1B-205ENST00000555543 C8orf76Q96K31 380 aa23.11■■□□□ 1.29
VTI1B-205ENST00000555543 FAM167AQ96KS9 214 aa23.11■■□□□ 1.29
VTI1B-205ENST00000555543 NAP1L4Q99733 375 aaKnown RBP23.11■■□□□ 1.29
VTI1B-205ENST00000555543 PRDM12Q9H4Q4 367 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms