RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 TOP1P11387 765 aaKnown RBP12.56□□□□□ -0.4
SHMT2-216ENST00000554975 EDNRBP24530 442 aa12.56□□□□□ -0.4
SHMT2-216ENST00000554975 SLC16A2P36021 539 aa12.56□□□□□ -0.4
SHMT2-216ENST00000554975 AKAP17AQ02040 695 aaKnown RBP12.56□□□□□ -0.4
SHMT2-216ENST00000554975 GUCY1B3Q02153 619 aa12.56□□□□□ -0.4
SHMT2-216ENST00000554975 IKBKEQ14164 716 aa12.56□□□□□ -0.4
SHMT2-216ENST00000554975 CAMK4Q16566 473 aa12.56□□□□□ -0.4
SHMT2-216ENST00000554975 TIGD5Q53EQ6 642 aa12.56□□□□□ -0.4
SHMT2-216ENST00000554975 BRDTQ58F21 947 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-216ENST00000554975 ZNF618Q5T7W0 954 aa12.56□□□□□ -0.4
SHMT2-216ENST00000554975 RPAINQ86UA6 219 aa12.56□□□□□ -0.4
SHMT2-216ENST00000554975 RNF135Q8IUD6 432 aa12.56□□□□□ -0.4
SHMT2-216ENST00000554975 CKAP2LQ8IYA6 745 aa12.56□□□□□ -0.4
SHMT2-216ENST00000554975 SCFD2Q8WU76 684 aa12.56□□□□□ -0.4
SHMT2-216ENST00000554975 AFG1LQ8WV93 481 aa12.56□□□□□ -0.4
SHMT2-216ENST00000554975 CLEC4DQ8WXI8 215 aa12.56□□□□□ -0.4
SHMT2-216ENST00000554975 BPIFA3Q9BQP9 254 aa12.56□□□□□ -0.4
SHMT2-216ENST00000554975 RNF26Q9BY78 433 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-216ENST00000554975 HDAC6Q9UBN7 1215 aa12.56□□□□□ -0.4
SHMT2-216ENST00000554975 INSL6Q9Y581 213 aa12.56□□□□□ -0.4
SHMT2-216ENST00000554975 H3BNC9 293 aa12.55□□□□□ -0.4
SHMT2-216ENST00000554975 CMA1P23946 247 aa12.55□□□□□ -0.4
SHMT2-216ENST00000554975 U2AF2P26368 475 aaKnown RBP eCLIP12.55□□□□□ -0.4
SHMT2-216ENST00000554975 PTPN5P54829 565 aa12.55□□□□□ -0.4
SHMT2-216ENST00000554975 ZNF200P98182 395 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-216ENST00000554975 PLCB2Q00722 1185 aa12.55□□□□□ -0.4
SHMT2-216ENST00000554975 CEBPZQ03701 1054 aaKnown RBP12.55□□□□□ -0.4
SHMT2-216ENST00000554975 ARHGAP1Q07960 439 aa12.55□□□□□ -0.4
SHMT2-216ENST00000554975 PDE4DQ08499 809 aa12.55□□□□□ -0.4
SHMT2-216ENST00000554975 GPM6BQ13491 265 aa12.55□□□□□ -0.4
SHMT2-216ENST00000554975 HIC1Q14526 733 aa12.55□□□□□ -0.4
SHMT2-216ENST00000554975 SLC39A14Q15043 492 aa12.55□□□□□ -0.4
SHMT2-216ENST00000554975 CCDC178Q5BJE1 867 aa12.55□□□□□ -0.4
SHMT2-216ENST00000554975 RILPL1Q5EBL4 403 aa12.55□□□□□ -0.4
SHMT2-216ENST00000554975 CCDC62Q6P9F0 684 aa12.55□□□□□ -0.4
SHMT2-216ENST00000554975 MYOCDQ8IZQ8 938 aa12.55□□□□□ -0.4
SHMT2-216ENST00000554975 ENGASEQ8NFI3 743 aa12.55□□□□□ -0.4
SHMT2-216ENST00000554975 TMEM47Q9BQJ4 181 aa12.55□□□□□ -0.4
SHMT2-216ENST00000554975 OSBPL7Q9BZF2 842 aa12.55□□□□□ -0.4
SHMT2-216ENST00000554975 BRMS1Q9HCU9 246 aa12.55□□□□□ -0.4
SHMT2-216ENST00000554975 TCP11L1Q9NUJ3 509 aa12.55□□□□□ -0.4
SHMT2-216ENST00000554975 GTF2IRD1Q9UHL9 959 aa12.55□□□□□ -0.4
SHMT2-216ENST00000554975 PCDHA7Q9UN72 937 aa12.55□□□□□ -0.4
SHMT2-216ENST00000554975 DOCK5Q9H7D0 1870 aa12.55□□□□□ -0.4
SHMT2-216ENST00000554975 LOC102724159A0A0B4J2E5 919 aa12.54□□□□□ -0.4
SHMT2-216ENST00000554975 MBTPS2O43462 519 aa12.54□□□□□ -0.4
SHMT2-216ENST00000554975 NRDCO43847 1150 aa12.54□□□□□ -0.4
SHMT2-216ENST00000554975 CUTAO60888 179 aa12.54□□□□□ -0.4
SHMT2-216ENST00000554975 GTF2F1P35269 517 aaKnown RBP eCLIP12.54□□□□□ -0.4
SHMT2-216ENST00000554975 RPS6P62753 249 aaKnown RBP12.54□□□□□ -0.4
SHMT2-216ENST00000554975 PWP2Q15269 919 aaKnown RBP12.54□□□□□ -0.4
SHMT2-216ENST00000554975 SMAD2Q15796 467 aaKnown RBP12.54□□□□□ -0.4
SHMT2-216ENST00000554975 NTRK3Q16288 839 aa12.54□□□□□ -0.4
SHMT2-216ENST00000554975 PTPROQ16827 1216 aa12.54□□□□□ -0.4
SHMT2-216ENST00000554975 LY6KQ17RY6 165 aa12.54□□□□□ -0.4
SHMT2-216ENST00000554975 CTC1Q2NKJ3 1217 aa12.54□□□□□ -0.4
SHMT2-216ENST00000554975 ELOA2Q8IYF1 753 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-216ENST00000554975 ZNF654Q8IZM8 581 aa12.54□□□□□ -0.4
SHMT2-216ENST00000554975 FMR1NBQ8N0W7 255 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-216ENST00000554975 DBF4BQ8NFT6 615 aa12.54□□□□□ -0.4
SHMT2-216ENST00000554975 DCAF4Q8WV16 495 aa12.54□□□□□ -0.4
SHMT2-216ENST00000554975 EDAQ92838 391 aa12.54□□□□□ -0.4
SHMT2-216ENST00000554975 MRFAP1L1Q96HT8 127 aa12.54□□□□□ -0.4
SHMT2-216ENST00000554975 SDF4Q9BRK5 362 aa12.54□□□□□ -0.4
SHMT2-216ENST00000554975 TRIM5Q9C035 493 aa12.54□□□□□ -0.4
SHMT2-216ENST00000554975 DNAJC25Q9H1X3 360 aa12.54□□□□□ -0.4
SHMT2-216ENST00000554975 FOXP1Q9H334 677 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-216ENST00000554975 NSUN3Q9H649 340 aaKnown RBP12.54□□□□□ -0.4
SHMT2-216ENST00000554975 GPCPD1Q9NPB8 672 aa12.54□□□□□ -0.4
SHMT2-216ENST00000554975 FRMPD2Q68DX3 1309 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-216ENST00000554975 VPS13AQ96RL7 3174 aa12.53□□□□□ -0.4
SHMT2-216ENST00000554975 FAM237AA0A1B0GTK4 181 aa12.53□□□□□ -0.4
SHMT2-216ENST00000554975 TMEM221A6NGB7 291 aa12.53□□□□□ -0.4
SHMT2-216ENST00000554975 M0R296 226 aa12.53□□□□□ -0.4
SHMT2-216ENST00000554975 GFRA3O60609 400 aa12.53□□□□□ -0.4
SHMT2-216ENST00000554975 EFCAB14O75071 495 aa12.53□□□□□ -0.4
SHMT2-216ENST00000554975 TBX10O75333 385 aa12.53□□□□□ -0.4
SHMT2-216ENST00000554975 PARNO95453 639 aaKnown RBP12.53□□□□□ -0.4
SHMT2-216ENST00000554975 MMP1P03956 469 aa12.53□□□□□ -0.4
SHMT2-216ENST00000554975 ZNF75DP51815 510 aa12.53□□□□□ -0.4
SHMT2-216ENST00000554975 HYAL1Q12794 435 aa12.53□□□□□ -0.4
SHMT2-216ENST00000554975 SNW1Q13573 536 aaKnown RBP12.53□□□□□ -0.4
SHMT2-216ENST00000554975 RNF207Q6ZRF8 634 aa12.53□□□□□ -0.4
SHMT2-216ENST00000554975 BMP8AQ7Z5Y6 402 aa12.53□□□□□ -0.4
SHMT2-216ENST00000554975 CATIPQ7Z7H3 387 aa12.53□□□□□ -0.4
SHMT2-216ENST00000554975 FBXO11Q86XK2 927 aa12.53□□□□□ -0.4
SHMT2-216ENST00000554975 PLA2G4DQ86XP0 818 aa12.53□□□□□ -0.4
SHMT2-216ENST00000554975 TMEM192Q8IY95 271 aa12.53□□□□□ -0.4
SHMT2-216ENST00000554975 FAM177A1Q8N128 213 aaPredicted RBP12.53□□□□□ -0.4
SHMT2-216ENST00000554975 PRIMPOLQ96LW4 560 aa12.53□□□□□ -0.4
SHMT2-216ENST00000554975 SLC26A6Q9BXS9 759 aa12.53□□□□□ -0.4
SHMT2-216ENST00000554975 GOLPH3LQ9H4A5 285 aa12.53□□□□□ -0.4
SHMT2-216ENST00000554975 KAT14Q9H8E8 782 aa12.53□□□□□ -0.4
SHMT2-216ENST00000554975 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.53□□□□□ -0.4
SHMT2-216ENST00000554975 ZSWIM5Q9P217 1185 aa12.53□□□□□ -0.4
SHMT2-216ENST00000554975 FAM50BQ9Y247 325 aa12.53□□□□□ -0.4
SHMT2-216ENST00000554975 SMTNL1A8MU46 457 aa12.52□□□□□ -0.41
SHMT2-216ENST00000554975 LINC01565O15544 149 aa12.52□□□□□ -0.41
SHMT2-216ENST00000554975 DTNBO60941 627 aa12.52□□□□□ -0.41
SHMT2-216ENST00000554975 AMHP03971 560 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms