RNA–Protein interactions for RNA: ENST00000554264.5

VPS33B-203, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-203ENST00000554264 DPH2Q9BQC3 489 aaPredicted RBP6.84□□□□□ -1.31
VPS33B-203ENST00000554264 ISCA1Q9BUE6 129 aa6.84□□□□□ -1.31
VPS33B-203ENST00000554264 LRRC3Q9BY71 257 aa6.84□□□□□ -1.31
VPS33B-203ENST00000554264 FOXQ1Q9C009 403 aa6.84□□□□□ -1.31
VPS33B-203ENST00000554264 USP44Q9H0E7 712 aa6.84□□□□□ -1.31
VPS33B-203ENST00000554264 NUP62CLQ9H1M0 184 aa6.84□□□□□ -1.31
VPS33B-203ENST00000554264 ZSCAN16Q9H4T2 348 aaPredicted RBP6.84□□□□□ -1.31
VPS33B-203ENST00000554264 ECHDC1Q9NTX5 307 aa6.84□□□□□ -1.31
VPS33B-203ENST00000554264 PDRG1Q9NUG6 133 aa6.84□□□□□ -1.31
VPS33B-203ENST00000554264 HYPKQ9NX55 129 aa6.84□□□□□ -1.31
VPS33B-203ENST00000554264 CFAP45Q9UL16 551 aa6.84□□□□□ -1.31
VPS33B-203ENST00000554264 PALD1Q9ULE6 856 aa6.84□□□□□ -1.31
VPS33B-203ENST00000554264 SPEF2Q9C093 1822 aa6.83□□□□□ -1.32
VPS33B-203ENST00000554264 SMTNL1A8MU46 457 aa6.83□□□□□ -1.32
VPS33B-203ENST00000554264 IRS4O14654 1257 aaPredicted RBP6.83□□□□□ -1.32
VPS33B-203ENST00000554264 CYP26A1O43174 497 aa6.83□□□□□ -1.32
VPS33B-203ENST00000554264 NRDCO43847 1150 aa6.83□□□□□ -1.32
VPS33B-203ENST00000554264 COBLO75128 1261 aa6.83□□□□□ -1.32
VPS33B-203ENST00000554264 HTR3BO95264 441 aa6.83□□□□□ -1.32
VPS33B-203ENST00000554264 CST3P01034 146 aaPredicted RBP6.83□□□□□ -1.32
VPS33B-203ENST00000554264 HMGB1P09429 215 aaKnown RBP6.83□□□□□ -1.32
VPS33B-203ENST00000554264 PLCG1P19174 1290 aa6.83□□□□□ -1.32
VPS33B-203ENST00000554264 INHBEP58166 350 aa6.83□□□□□ -1.32
VPS33B-203ENST00000554264 GABPB1Q06547 395 aaPredicted RBP6.83□□□□□ -1.32
VPS33B-203ENST00000554264 RAD51AP2Q09MP3 1159 aa6.83□□□□□ -1.32
VPS33B-203ENST00000554264 MSMPQ1L6U9 139 aa6.83□□□□□ -1.32
VPS33B-203ENST00000554264 TMEM201Q5SNT2 666 aa6.83□□□□□ -1.32
VPS33B-203ENST00000554264 ARTNQ5T4W7 220 aa6.83□□□□□ -1.32
VPS33B-203ENST00000554264 MOB2Q70IA6 237 aa6.83□□□□□ -1.32
VPS33B-203ENST00000554264 RUFY3Q7L099 469 aa6.83□□□□□ -1.32
VPS33B-203ENST00000554264 NT5DC4Q86YG4 428 aa6.83□□□□□ -1.32
VPS33B-203ENST00000554264 MCATQ8IVS2 390 aaKnown RBP6.83□□□□□ -1.32
VPS33B-203ENST00000554264 MRPL41Q8IXM3 137 aaKnown RBP6.83□□□□□ -1.32
VPS33B-203ENST00000554264 Q8N3U1 123 aa6.83□□□□□ -1.32
VPS33B-203ENST00000554264 FAM181AQ8N9Y4 354 aa6.83□□□□□ -1.32
VPS33B-203ENST00000554264 GIMAP7Q8NHV1 300 aa6.83□□□□□ -1.32
VPS33B-203ENST00000554264 TMEM87BQ96K49 555 aa6.83□□□□□ -1.32
VPS33B-203ENST00000554264 GMLQ99445 158 aa6.83□□□□□ -1.32
VPS33B-203ENST00000554264 LLPHQ9BRT6 129 aaKnown RBP6.83□□□□□ -1.32
VPS33B-203ENST00000554264 SPON2Q9BUD6 331 aa6.83□□□□□ -1.32
VPS33B-203ENST00000554264 METTL22Q9BUU2 404 aaPredicted RBP6.83□□□□□ -1.32
VPS33B-203ENST00000554264 NT5C1AQ9BXI3 368 aa6.83□□□□□ -1.32
VPS33B-203ENST00000554264 LRRC4CQ9HCJ2 640 aa6.83□□□□□ -1.32
VPS33B-203ENST00000554264 KCND1Q9NSA2 647 aa6.83□□□□□ -1.32
VPS33B-203ENST00000554264 CGNQ9P2M7 1197 aaKnown RBP6.83□□□□□ -1.32
VPS33B-203ENST00000554264 ZC3H7BQ9UGR2 993 aaKnown RBP6.83□□□□□ -1.32
VPS33B-203ENST00000554264 CNPY2Q9Y2B0 182 aa6.83□□□□□ -1.32
VPS33B-203ENST00000554264 XDHP47989 1333 aa6.82□□□□□ -1.32
VPS33B-203ENST00000554264 MYO3BQ8WXR4 1341 aa6.82□□□□□ -1.32
VPS33B-203ENST00000554264 PNMA6EA0A0J9YXQ4 647 aa6.82□□□□□ -1.32
VPS33B-203ENST00000554264 KIAA1324LA8MWY0 1029 aaPredicted RBP6.82□□□□□ -1.32
VPS33B-203ENST00000554264 SRGAP3O43295 1099 aa6.82□□□□□ -1.32
VPS33B-203ENST00000554264 CCP110O43303 1012 aa6.82□□□□□ -1.32
VPS33B-203ENST00000554264 DDX58O95786 925 aaKnown RBP6.82□□□□□ -1.32
VPS33B-203ENST00000554264 IFIT2P09913 472 aaKnown RBP6.82□□□□□ -1.32
VPS33B-203ENST00000554264 CASTP20810 708 aaKnown RBP6.82□□□□□ -1.32
VPS33B-203ENST00000554264 GJB2P29033 226 aa6.82□□□□□ -1.32
VPS33B-203ENST00000554264 RBM10P98175 930 aaKnown RBP6.82□□□□□ -1.32
VPS33B-203ENST00000554264 CYP27A1Q02318 531 aa6.82□□□□□ -1.32
VPS33B-203ENST00000554264 CLCQ05315 142 aa6.82□□□□□ -1.32
VPS33B-203ENST00000554264 LRP8Q14114 963 aa6.82□□□□□ -1.32
VPS33B-203ENST00000554264 CCDC152Q4G0S7 254 aa6.82□□□□□ -1.32
VPS33B-203ENST00000554264 SEZ6Q53EL9 994 aa6.82□□□□□ -1.32
VPS33B-203ENST00000554264 SARM1Q6SZW1 724 aa6.82□□□□□ -1.32
VPS33B-203ENST00000554264 G2E3Q7L622 706 aa6.82□□□□□ -1.32
VPS33B-203ENST00000554264 KIAA0825Q8IV33 1275 aa6.82□□□□□ -1.32
VPS33B-203ENST00000554264 ZBTB38Q8NAP3 1195 aaPredicted RBP6.82□□□□□ -1.32
VPS33B-203ENST00000554264 TDRD7Q8NHU6 1098 aaKnown RBP6.82□□□□□ -1.32
VPS33B-203ENST00000554264 DNAAF4Q8WXU2 420 aa6.82□□□□□ -1.32
VPS33B-203ENST00000554264 ANKRD7Q92527 254 aa6.82□□□□□ -1.32
VPS33B-203ENST00000554264 UPF3BQ9BZI7 483 aaKnown RBP6.82□□□□□ -1.32
VPS33B-203ENST00000554264 CHPF2Q9P2E5 772 aa6.82□□□□□ -1.32
VPS33B-203ENST00000554264 DBF4Q9UBU7 674 aaPredicted RBP6.82□□□□□ -1.32
VPS33B-203ENST00000554264 REV1Q9UBZ9 1251 aa6.82□□□□□ -1.32
VPS33B-203ENST00000554264 ADAM30Q9UKF2 790 aa6.82□□□□□ -1.32
VPS33B-203ENST00000554264 MTMR6Q9Y217 621 aa6.82□□□□□ -1.32
VPS33B-203ENST00000554264 TRIM17Q9Y577 477 aa6.82□□□□□ -1.32
VPS33B-203ENST00000554264 POLR2AP24928 1970 aaKnown RBP6.82□□□□□ -1.32
VPS33B-203ENST00000554264 LOC100996750A0A140TA64 210 aa6.81□□□□□ -1.32
VPS33B-203ENST00000554264 MANSC4A6NHS7 340 aaPredicted RBP6.81□□□□□ -1.32
VPS33B-203ENST00000554264 CHURC1-FNTBB4DL54 471 aa6.81□□□□□ -1.32
VPS33B-203ENST00000554264 FIBPO43427 364 aa6.81□□□□□ -1.32
VPS33B-203ENST00000554264 SPINK2P20155 84 aa6.81□□□□□ -1.32
VPS33B-203ENST00000554264 KCNJ6P48051 423 aa6.81□□□□□ -1.32
VPS33B-203ENST00000554264 FXR1P51114 621 aaKnown RBP eCLIP6.81□□□□□ -1.32
VPS33B-203ENST00000554264 OXCT1P55809 520 aa6.81□□□□□ -1.32
VPS33B-203ENST00000554264 GSDMDP57764 484 aa6.81□□□□□ -1.32
VPS33B-203ENST00000554264 PDE4BQ07343 736 aa6.81□□□□□ -1.32
VPS33B-203ENST00000554264 APOBRQ0VD83 1088 aa6.81□□□□□ -1.32
VPS33B-203ENST00000554264 OS9Q13438 667 aaPredicted RBP6.81□□□□□ -1.32
VPS33B-203ENST00000554264 NECTIN1Q15223 517 aa6.81□□□□□ -1.32
VPS33B-203ENST00000554264 CPSF6Q16630 551 aaKnown RBP eCLIP6.81□□□□□ -1.32
VPS33B-203ENST00000554264 KRT24Q2M2I5 525 aa6.81□□□□□ -1.32
VPS33B-203ENST00000554264 NBPF9Q3BBW0 867 aa6.81□□□□□ -1.32
VPS33B-203ENST00000554264 CYP27C1Q4G0S4 372 aa6.81□□□□□ -1.32
VPS33B-203ENST00000554264 PRAMEF18Q5VWM3 479 aa6.81□□□□□ -1.32
VPS33B-203ENST00000554264 LARP1BQ659C4 914 aaKnown RBP6.81□□□□□ -1.32
VPS33B-203ENST00000554264 SLC6A19Q695T7 634 aa6.81□□□□□ -1.32
VPS33B-203ENST00000554264 OTUD7BQ6GQQ9 843 aa6.81□□□□□ -1.32
VPS33B-203ENST00000554264 BLOC1S2Q6QNY1 142 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms