RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ZBTB39O15060 712 aa29.09■■■□□ 2.25
CCDC88C-205ENST00000553403 CALUO43852 315 aaPredicted RBP29.09■■■□□ 2.25
CCDC88C-205ENST00000553403 JAK3P52333 1124 aa29.09■■■□□ 2.25
CCDC88C-205ENST00000553403 ETF1P62495 437 aaKnown RBP29.09■■■□□ 2.25
CCDC88C-205ENST00000553403 TSR1Q2NL82 804 aaKnown RBP29.09■■■□□ 2.25
CCDC88C-205ENST00000553403 CCDC40Q4G0X9 1142 aa29.09■■■□□ 2.25
CCDC88C-205ENST00000553403 DLK2Q6UY11 383 aa29.09■■■□□ 2.25
CCDC88C-205ENST00000553403 CHST13Q8NET6 341 aa29.09■■■□□ 2.25
CCDC88C-205ENST00000553403 PARVGQ9HBI0 331 aa29.09■■■□□ 2.25
CCDC88C-205ENST00000553403 CYP39A1Q9NYL5 469 aa29.09■■■□□ 2.25
CCDC88C-205ENST00000553403 CETN3O15182 167 aa29.08■■■□□ 2.25
CCDC88C-205ENST00000553403 NKRFO15226 690 aaKnown RBP eCLIP29.08■■■□□ 2.25
CCDC88C-205ENST00000553403 MYBP10242 640 aa29.08■■■□□ 2.25
CCDC88C-205ENST00000553403 SFNP31947 248 aa29.08■■■□□ 2.25
CCDC88C-205ENST00000553403 KRT76Q01546 638 aa29.08■■■□□ 2.25
CCDC88C-205ENST00000553403 PPATQ06203 517 aa29.08■■■□□ 2.25
CCDC88C-205ENST00000553403 MTF1Q14872 753 aa29.08■■■□□ 2.25
CCDC88C-205ENST00000553403 SMC1BQ8NDV3 1235 aa29.08■■■□□ 2.25
CCDC88C-205ENST00000553403 RDM1Q8NG50 284 aa29.08■■■□□ 2.25
CCDC88C-205ENST00000553403 SIK3Q9Y2K2 1263 aa29.08■■■□□ 2.25
CCDC88C-205ENST00000553403 ADGRG1Q9Y653 693 aa29.08■■■□□ 2.25
CCDC88C-205ENST00000553403 UBE4BO95155 1302 aa29.07■■■□□ 2.24
CCDC88C-205ENST00000553403 STAM2O75886 525 aa29.07■■■□□ 2.24
CCDC88C-205ENST00000553403 TRIM21P19474 475 aaKnown RBP29.07■■■□□ 2.24
CCDC88C-205ENST00000553403 NF2P35240 595 aa29.07■■■□□ 2.24
CCDC88C-205ENST00000553403 QARSP47897 775 aaKnown RBP29.07■■■□□ 2.24
CCDC88C-205ENST00000553403 ERVK-24P63145 666 aa29.07■■■□□ 2.24
CCDC88C-205ENST00000553403 ZBED6P86452 979 aa29.07■■■□□ 2.24
CCDC88C-205ENST00000553403 ADAM9Q13443 819 aa29.07■■■□□ 2.24
CCDC88C-205ENST00000553403 PCMTD1Q96MG8 357 aaPredicted RBP29.07■■■□□ 2.24
CCDC88C-205ENST00000553403 INPP4AQ96PE3 977 aaPredicted RBP29.07■■■□□ 2.24
CCDC88C-205ENST00000553403 PURBQ96QR8 312 aaKnown RBP29.07■■■□□ 2.24
CCDC88C-205ENST00000553403 A1CFQ9NQ94 594 aaKnown RBP29.07■■■□□ 2.24
CCDC88C-205ENST00000553403 TYW1Q9NV66 732 aaKnown RBP29.07■■■□□ 2.24
CCDC88C-205ENST00000553403 TCEAL9Q9UHQ7 104 aa29.07■■■□□ 2.24
CCDC88C-205ENST00000553403 LOC285556D6RIA3 1793 aa29.07■■■□□ 2.24
CCDC88C-205ENST00000553403 PTPRFP10586 1907 aa29.07■■■□□ 2.24
CCDC88C-205ENST00000553403 HOXD13P35453 343 aa29.06■■■□□ 2.24
CCDC88C-205ENST00000553403 APLP1P51693 650 aa29.06■■■□□ 2.24
CCDC88C-205ENST00000553403 TRIM65Q6PJ69 517 aa29.06■■■□□ 2.24
CCDC88C-205ENST00000553403 MYCT1Q8N699 235 aa29.06■■■□□ 2.24
CCDC88C-205ENST00000553403 PROCA1Q8NCQ7 364 aaPredicted RBP29.06■■■□□ 2.24
CCDC88C-205ENST00000553403 SENP7Q9BQF6 1050 aa29.06■■■□□ 2.24
CCDC88C-205ENST00000553403 PHLPP2Q6ZVD8 1323 aa29.06■■■□□ 2.24
CCDC88C-205ENST00000553403 TESPA1A2RU30 521 aaPredicted RBP29.05■■■□□ 2.24
CCDC88C-205ENST00000553403 PRPF6O94906 941 aaKnown RBP29.05■■■□□ 2.24
CCDC88C-205ENST00000553403 GCNT3O95395 438 aa29.05■■■□□ 2.24
CCDC88C-205ENST00000553403 LBX2Q6XYB7 198 aa29.05■■■□□ 2.24
CCDC88C-205ENST00000553403 ERO1BQ86YB8 467 aa29.05■■■□□ 2.24
CCDC88C-205ENST00000553403 TRIM59Q8IWR1 403 aa29.05■■■□□ 2.24
CCDC88C-205ENST00000553403 CDCA5Q96FF9 252 aa29.05■■■□□ 2.24
CCDC88C-205ENST00000553403 FAM184BQ9ULE4 1060 aa29.05■■■□□ 2.24
CCDC88C-205ENST00000553403 WDR64B1ANS9 1081 aa29.05■■■□□ 2.24
CCDC88C-205ENST00000553403 CXCL11O14625 94 aa29.05■■■□□ 2.24
CCDC88C-205ENST00000553403 EPHX2P34913 555 aa29.05■■■□□ 2.24
CCDC88C-205ENST00000553403 PLS1Q14651 629 aa29.05■■■□□ 2.24
CCDC88C-205ENST00000553403 TREML2Q5T2D2 321 aa29.05■■■□□ 2.24
CCDC88C-205ENST00000553403 SYT10Q6XYQ8 523 aa29.05■■■□□ 2.24
CCDC88C-205ENST00000553403 STXBP4Q6ZWJ1 553 aa29.05■■■□□ 2.24
CCDC88C-205ENST00000553403 C4orf19Q8IY42 314 aa29.05■■■□□ 2.24
CCDC88C-205ENST00000553403 ANKRD13AQ8IZ07 590 aa29.05■■■□□ 2.24
CCDC88C-205ENST00000553403 ZNF397Q8NF99 534 aaPredicted RBP29.05■■■□□ 2.24
CCDC88C-205ENST00000553403 DESI2Q9BSY9 194 aa29.05■■■□□ 2.24
CCDC88C-205ENST00000553403 SAMM50Q9Y512 469 aa29.05■■■□□ 2.24
CCDC88C-205ENST00000553403 A0A0G2JLL6 359 aaPredicted RBP29.04■■■□□ 2.24
CCDC88C-205ENST00000553403 ATP9AO75110 1047 aa29.04■■■□□ 2.24
CCDC88C-205ENST00000553403 KLK7P49862 253 aa29.04■■■□□ 2.24
CCDC88C-205ENST00000553403 MEA1Q16626 185 aa29.04■■■□□ 2.24
CCDC88C-205ENST00000553403 ZNF746Q6NUN9 644 aaPredicted RBP29.04■■■□□ 2.24
CCDC88C-205ENST00000553403 PRRT2Q7Z6L0 340 aaPredicted RBP29.04■■■□□ 2.24
CCDC88C-205ENST00000553403 CDHR1Q96JP9 859 aa29.04■■■□□ 2.24
CCDC88C-205ENST00000553403 NR2F2P24468 414 aa29.03■■■□□ 2.24
CCDC88C-205ENST00000553403 NFIL3Q16649 462 aa29.03■■■□□ 2.24
CCDC88C-205ENST00000553403 PADI6Q6TGC4 694 aa29.03■■■□□ 2.24
CCDC88C-205ENST00000553403 CNKSR2Q8WXI2 1034 aa29.03■■■□□ 2.24
CCDC88C-205ENST00000553403 EDEM3Q9BZQ6 932 aa29.03■■■□□ 2.24
CCDC88C-205ENST00000553403 A0A0G2JMZ2 1700 aa29.03■■■□□ 2.24
CCDC88C-205ENST00000553403 SFI1A8K8P3 1242 aa29.02■■■□□ 2.24
CCDC88C-205ENST00000553403 RPL13P26373 211 aaKnown RBP29.02■■■□□ 2.24
CCDC88C-205ENST00000553403 PSMC5P62195 406 aa29.02■■■□□ 2.24
CCDC88C-205ENST00000553403 FRMD5Q7Z6J6 570 aa29.02■■■□□ 2.24
CCDC88C-205ENST00000553403 FIZ1Q96SL8 496 aa29.02■■■□□ 2.24
CCDC88C-205ENST00000553403 ELP3Q9H9T3 547 aa29.02■■■□□ 2.24
CCDC88C-205ENST00000553403 ZNHIT6Q9NWK9 470 aaKnown RBP29.02■■■□□ 2.24
CCDC88C-205ENST00000553403 FBXO40Q9UH90 709 aa29.02■■■□□ 2.24
CCDC88C-205ENST00000553403 IQCA1LA6NCM1 817 aa29.02■■■□□ 2.24
CCDC88C-205ENST00000553403 SPDYE5A6NIY4 337 aa29.02■■■□□ 2.24
CCDC88C-205ENST00000553403 PPP2R3AQ06190 1150 aa29.02■■■□□ 2.24
CCDC88C-205ENST00000553403 RIOX2Q8IUF8 465 aa29.02■■■□□ 2.24
CCDC88C-205ENST00000553403 IWS1Q96ST2 819 aa29.02■■■□□ 2.24
CCDC88C-205ENST00000553403 TIPINQ9BVW5 301 aa29.02■■■□□ 2.24
CCDC88C-205ENST00000553403 AGPAT5Q9NUQ2 364 aa29.02■■■□□ 2.24
CCDC88C-205ENST00000553403 UTP18Q9Y5J1 556 aaKnown RBP eCLIP29.02■■■□□ 2.24
CCDC88C-205ENST00000553403 ASTN1O14525 1302 aa29.01■■■□□ 2.24
CCDC88C-205ENST00000553403 NFASCO94856 1347 aa29.01■■■□□ 2.24
CCDC88C-205ENST00000553403 CCNE2O96020 404 aa29.01■■■□□ 2.23
CCDC88C-205ENST00000553403 RARRES1P49788 294 aa29.01■■■□□ 2.23
CCDC88C-205ENST00000553403 MAPK7Q13164 816 aa29.01■■■□□ 2.23
CCDC88C-205ENST00000553403 WDR59Q6PJI9 974 aa29.01■■■□□ 2.23
CCDC88C-205ENST00000553403 GADL1Q6ZQY3 521 aa29.01■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms