RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 DBF4BQ8NFT6 615 aa21.81■■□□□ 1.08
PTCH1-227ENST00000553256 TIFAQ96CG3 184 aa21.81■■□□□ 1.08
PTCH1-227ENST00000553256 FTOQ9C0B1 505 aaKnown RBP eCLIP21.81■■□□□ 1.08
PTCH1-227ENST00000553256 DDX25Q9UHL0 483 aaKnown RBP21.81■■□□□ 1.08
PTCH1-227ENST00000553256 VAV3Q9UKW4 847 aa21.81■■□□□ 1.08
PTCH1-227ENST00000553256 COL1A2P08123 1366 aa21.8■■□□□ 1.08
PTCH1-227ENST00000553256 CCDC194A0A1B0GVG4 234 aa21.8■■□□□ 1.08
PTCH1-227ENST00000553256 WDR64B1ANS9 1081 aa21.8■■□□□ 1.08
PTCH1-227ENST00000553256 ACTN1P12814 892 aa21.8■■□□□ 1.08
PTCH1-227ENST00000553256 ATP2A2P16615 1042 aaKnown RBP21.8■■□□□ 1.08
PTCH1-227ENST00000553256 KRT2P35908 639 aa21.8■■□□□ 1.08
PTCH1-227ENST00000553256 RABGGTBP53611 331 aa21.8■■□□□ 1.08
PTCH1-227ENST00000553256 LETM2Q2VYF4 491 aa21.8■■□□□ 1.08
PTCH1-227ENST00000553256 LRCH2Q5VUJ6 765 aa21.8■■□□□ 1.08
PTCH1-227ENST00000553256 FAM160B1Q5W0V3 765 aa21.8■■□□□ 1.08
PTCH1-227ENST00000553256 PDXDC2PQ6P474 469 aa21.8■■□□□ 1.08
PTCH1-227ENST00000553256 MTHFD1LQ6UB35 978 aa21.8■■□□□ 1.08
PTCH1-227ENST00000553256 LINC01465Q8N7H1 131 aa21.8■■□□□ 1.08
PTCH1-227ENST00000553256 IL27Q8NEV9 243 aa21.8■■□□□ 1.08
PTCH1-227ENST00000553256 DNAJB3Q8WWF6 145 aa21.8■■□□□ 1.08
PTCH1-227ENST00000553256 CEP89Q96ST8 783 aa21.8■■□□□ 1.08
PTCH1-227ENST00000553256 SLC9A7Q96T83 725 aa21.8■■□□□ 1.08
PTCH1-227ENST00000553256 DISC1Q9NRI5 854 aa21.8■■□□□ 1.08
PTCH1-227ENST00000553256 TRPC6Q9Y210 931 aa21.8■■□□□ 1.08
PTCH1-227ENST00000553256 STXBP5LQ9Y2K9 1186 aa21.8■■□□□ 1.08
PTCH1-227ENST00000553256 KAT6AQ92794 2004 aa21.8■■□□□ 1.08
PTCH1-227ENST00000553256 GBF1Q92538 1859 aa21.79■■□□□ 1.08
PTCH1-227ENST00000553256 WDR81Q562E7 1941 aa21.79■■□□□ 1.08
PTCH1-227ENST00000553256 SMIM35A0A1B0GVV1 85 aa21.79■■□□□ 1.08
PTCH1-227ENST00000553256 ABHD14A-ACY1A0A1B0GW23 586 aa21.79■■□□□ 1.08
PTCH1-227ENST00000553256 BACH1O14867 736 aa21.79■■□□□ 1.08
PTCH1-227ENST00000553256 GAS7O60861 476 aa21.79■■□□□ 1.08
PTCH1-227ENST00000553256 ARHGEF15O94989 841 aa21.79■■□□□ 1.08
PTCH1-227ENST00000553256 PSAPP07602 524 aa21.79■■□□□ 1.08
PTCH1-227ENST00000553256 CTSHP09668 335 aa21.79■■□□□ 1.08
PTCH1-227ENST00000553256 MYOGP15173 224 aa21.79■■□□□ 1.08
PTCH1-227ENST00000553256 GCFC2P16383 781 aaKnown RBP21.79■■□□□ 1.08
PTCH1-227ENST00000553256 IGBP1P78318 339 aa21.79■■□□□ 1.08
PTCH1-227ENST00000553256 DEFB103AP81534 67 aa21.79■■□□□ 1.08
PTCH1-227ENST00000553256 SPIRE1Q08AE8 756 aa21.79■■□□□ 1.08
PTCH1-227ENST00000553256 GRIN2CQ14957 1233 aa21.79■■□□□ 1.08
PTCH1-227ENST00000553256 HERC6Q8IVU3 1022 aa21.79■■□□□ 1.08
PTCH1-227ENST00000553256 DIS3L2Q8IYB7 885 aaKnown RBP21.79■■□□□ 1.08
PTCH1-227ENST00000553256 RDM1Q8NG50 284 aa21.79■■□□□ 1.08
PTCH1-227ENST00000553256 BBXQ8WY36 941 aaPredicted RBP21.79■■□□□ 1.08
PTCH1-227ENST00000553256 FAM161BQ96MY7 647 aa21.79■■□□□ 1.08
PTCH1-227ENST00000553256 CDX2Q99626 313 aaPredicted RBP21.79■■□□□ 1.08
PTCH1-227ENST00000553256 TEKT3Q9BXF9 490 aa21.79■■□□□ 1.08
PTCH1-227ENST00000553256 GABBR1Q9UBS5 961 aa21.79■■□□□ 1.08
PTCH1-227ENST00000553256 PCDHA11Q9Y5I1 949 aa21.79■■□□□ 1.08
PTCH1-227ENST00000553256 ZBBXA8MT70 800 aa21.78■■□□□ 1.08
PTCH1-227ENST00000553256 C22orf31O95567 290 aa21.78■■□□□ 1.08
PTCH1-227ENST00000553256 SFNP31947 248 aa21.78■■□□□ 1.08
PTCH1-227ENST00000553256 PPP2R5CQ13362 524 aa21.78■■□□□ 1.08
PTCH1-227ENST00000553256 RAB30Q15771 203 aa21.78■■□□□ 1.08
PTCH1-227ENST00000553256 ZNF484Q5JVG2 852 aa21.78■■□□□ 1.08
PTCH1-227ENST00000553256 KIAA0319LQ8IZA0 1049 aa21.78■■□□□ 1.08
PTCH1-227ENST00000553256 FAM20AQ96MK3 541 aa21.78■■□□□ 1.08
PTCH1-227ENST00000553256 ZNF576Q9H609 170 aa21.78■■□□□ 1.08
PTCH1-227ENST00000553256 KDM3AQ9Y4C1 1321 aa21.78■■□□□ 1.08
PTCH1-227ENST00000553256 EML1O00423 815 aa21.77■■□□□ 1.08
PTCH1-227ENST00000553256 TBX3O15119 743 aa21.77■■□□□ 1.08
PTCH1-227ENST00000553256 KLRC1P26715 233 aa21.77■■□□□ 1.08
PTCH1-227ENST00000553256 JAK3P52333 1124 aa21.77■■□□□ 1.08
PTCH1-227ENST00000553256 LPIN1Q14693 890 aa21.77■■□□□ 1.08
PTCH1-227ENST00000553256 TARBP2Q15633 366 aaKnown RBP21.77■■□□□ 1.08
PTCH1-227ENST00000553256 FBXO47Q5MNV8 452 aa21.77■■□□□ 1.08
PTCH1-227ENST00000553256 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.77■■□□□ 1.08
PTCH1-227ENST00000553256 FBXO18Q8NFZ0 1043 aa21.77■■□□□ 1.08
PTCH1-227ENST00000553256 TNPO1Q92973 898 aaKnown RBP21.77■■□□□ 1.08
PTCH1-227ENST00000553256 BACH2Q9BYV9 841 aa21.77■■□□□ 1.08
PTCH1-227ENST00000553256 TRANK1O15050 2925 aa21.77■■□□□ 1.08
PTCH1-227ENST00000553256 SPTBN5Q9NRC6 3674 aaKnown RBP21.77■■□□□ 1.08
PTCH1-227ENST00000553256 PRUNE2Q8WUY3 3088 aa21.76■■□□□ 1.07
PTCH1-227ENST00000553256 LOC101059915A0A1B0GWI6 518 aaPredicted RBP21.76■■□□□ 1.07
PTCH1-227ENST00000553256 RPLP2P05387 115 aaKnown RBP21.76■■□□□ 1.07
PTCH1-227ENST00000553256 MRPS6P82932 125 aaKnown RBP21.76■■□□□ 1.07
PTCH1-227ENST00000553256 TMCO2Q7Z6W1 182 aaPredicted RBP21.76■■□□□ 1.07
PTCH1-227ENST00000553256 POTEDQ86YR6 584 aa21.76■■□□□ 1.07
PTCH1-227ENST00000553256 NKX2-4Q9H2Z4 354 aa21.76■■□□□ 1.07
PTCH1-227ENST00000553256 AGO3Q9H9G7 860 aaKnown RBP21.76■■□□□ 1.07
PTCH1-227ENST00000553256 CDY2AQ9Y6F7 541 aa21.76■■□□□ 1.07
PTCH1-227ENST00000553256 MICAL3Q7RTP6 2002 aa21.75■■□□□ 1.07
PTCH1-227ENST00000553256 CCNT1O60563 726 aaKnown RBP21.75■■□□□ 1.07
PTCH1-227ENST00000553256 EFCAB14O75071 495 aa21.75■■□□□ 1.07
PTCH1-227ENST00000553256 HMGN5P82970 282 aaKnown RBP21.75■■□□□ 1.07
PTCH1-227ENST00000553256 IKBKEQ14164 716 aa21.75■■□□□ 1.07
PTCH1-227ENST00000553256 SQORQ9Y6N5 450 aa21.75■■□□□ 1.07
PTCH1-227ENST00000553256 CHMP2AO43633 222 aa21.74■■□□□ 1.07
PTCH1-227ENST00000553256 GJB5O95377 273 aa21.74■■□□□ 1.07
PTCH1-227ENST00000553256 OATP04181 439 aa21.74■■□□□ 1.07
PTCH1-227ENST00000553256 PRKCEQ02156 737 aa21.74■■□□□ 1.07
PTCH1-227ENST00000553256 CRIPAKQ8N1N5 446 aa21.74■■□□□ 1.07
PTCH1-227ENST00000553256 NME8Q8N427 588 aa21.74■■□□□ 1.07
PTCH1-227ENST00000553256 TMX3Q96JJ7 454 aa21.74■■□□□ 1.07
PTCH1-227ENST00000553256 MTMR9Q96QG7 549 aa21.74■■□□□ 1.07
PTCH1-227ENST00000553256 NAP1L4Q99733 375 aaKnown RBP21.74■■□□□ 1.07
PTCH1-227ENST00000553256 NIFKQ9BYG3 293 aaKnown RBP21.74■■□□□ 1.07
PTCH1-227ENST00000553256 FAM49AQ9H0Q0 323 aaPredicted RBP21.74■■□□□ 1.07
PTCH1-227ENST00000553256 WRAP73Q9P2S5 460 aaPredicted RBP21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms