RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 EEPD1Q7L9B9 569 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 ZNF467Q7Z7K2 595 aaPredicted RBP8.49□□□□□ -1.05
LIMA1-216ENST00000552909 CTAGE6Q86UF2 777 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 CTAGE4Q8IX94 777 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 FAM212AQ96EL1 285 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 PAWRQ96IZ0 340 aaKnown RBP8.49□□□□□ -1.05
LIMA1-216ENST00000552909 DESI2Q9BSY9 194 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 SPZ1Q9BXG8 430 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 KATNBL1Q9H079 304 aa8.49□□□□□ -1.05
LIMA1-216ENST00000552909 MRPL44Q9H9J2 332 aaKnown RBP8.49□□□□□ -1.05
LIMA1-216ENST00000552909 ABCB11O95342 1321 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 PNMA6FA0A0J9YX94 578 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 SHOX2O60902 331 aaPredicted RBP8.48□□□□□ -1.05
LIMA1-216ENST00000552909 PRPF6O94906 941 aaKnown RBP8.48□□□□□ -1.05
LIMA1-216ENST00000552909 CFBP00751 764 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 ACVR2BQ13705 512 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 PTPN21Q16825 1174 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 TMTC3Q6ZXV5 915 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 TC2NQ8N9U0 490 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 C8orf76Q96K31 380 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 AIFM3Q96NN9 605 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 CLIC6Q96NY7 704 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 ALG1Q9BT22 464 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 LZTFL1Q9NQ48 299 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 PDGFCQ9NRA1 345 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 GJB4Q9NTQ9 266 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 RBM28Q9NW13 759 aaKnown RBP8.48□□□□□ -1.05
LIMA1-216ENST00000552909 FRMPD3Q5JV73 1810 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.48□□□□□ -1.05
LIMA1-216ENST00000552909 CTAGE9A4FU28 777 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 FARP2O94887 1054 aaPredicted RBP8.48□□□□□ -1.05
LIMA1-216ENST00000552909 SYF2O95926 243 aaKnown RBP8.48□□□□□ -1.05
LIMA1-216ENST00000552909 PGK1P00558 417 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 CALRP27797 417 aaKnown RBP8.48□□□□□ -1.05
LIMA1-216ENST00000552909 HOXA13P31271 388 aaPredicted RBP8.48□□□□□ -1.05
LIMA1-216ENST00000552909 ALDH5A1P51649 535 aaPredicted RBP8.48□□□□□ -1.05
LIMA1-216ENST00000552909 FUT2Q10981 343 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 WHAMMP3Q1A5X7 153 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 LRCH2Q5VUJ6 765 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 SPECC1LQ69YQ0 1117 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 WDR93Q6P2C0 686 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 EGFL6Q8IUX8 553 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 TRIM22Q8IYM9 498 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 IGSF22Q8N9C0 903 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 LINC00301Q8NCQ3 95 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 SYTL5Q8TDW5 730 aaPredicted RBP8.48□□□□□ -1.05
LIMA1-216ENST00000552909 TAAR1Q96RJ0 339 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 JPH2Q9BR39 696 aaPredicted RBP8.48□□□□□ -1.05
LIMA1-216ENST00000552909 IRX2Q9BZI1 471 aaPredicted RBP8.48□□□□□ -1.05
LIMA1-216ENST00000552909 ABHD16BQ9H3Z7 469 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 PNMA2Q9UL42 364 aa8.48□□□□□ -1.05
LIMA1-216ENST00000552909 MRPL11Q9Y3B7 192 aaKnown RBP8.48□□□□□ -1.05
LIMA1-216ENST00000552909 V9GY48 417 aaPredicted RBP8.48□□□□□ -1.05
LIMA1-216ENST00000552909 PPP1R12AO14974 1030 aaPredicted RBP8.47□□□□□ -1.05
LIMA1-216ENST00000552909 YEATS4O95619 227 aa8.47□□□□□ -1.05
LIMA1-216ENST00000552909 SMARCA1P28370 1054 aa8.47□□□□□ -1.05
LIMA1-216ENST00000552909 GNAQP50148 359 aa8.47□□□□□ -1.05
LIMA1-216ENST00000552909 ADKP55263 362 aaKnown RBP8.47□□□□□ -1.05
LIMA1-216ENST00000552909 AKAP17AQ02040 695 aaKnown RBP8.47□□□□□ -1.05
LIMA1-216ENST00000552909 NEDD9Q14511 834 aa8.47□□□□□ -1.05
LIMA1-216ENST00000552909 MAP9Q49MG5 647 aa8.47□□□□□ -1.05
LIMA1-216ENST00000552909 GJC2Q5T442 439 aaPredicted RBP8.47□□□□□ -1.05
LIMA1-216ENST00000552909 FBXO16Q8IX29 292 aaPredicted RBP8.47□□□□□ -1.05
LIMA1-216ENST00000552909 RRP36Q96EU6 259 aaKnown RBP8.47□□□□□ -1.05
LIMA1-216ENST00000552909 CABS1Q96KC9 395 aa8.47□□□□□ -1.05
LIMA1-216ENST00000552909 FANCLQ9NW38 375 aa8.47□□□□□ -1.05
LIMA1-216ENST00000552909 PCDH10Q9P2E7 1040 aa8.47□□□□□ -1.05
LIMA1-216ENST00000552909 TUBE1Q9UJT0 475 aa8.47□□□□□ -1.05
LIMA1-216ENST00000552909 ASB14A6NK59 587 aa8.46□□□□□ -1.05
LIMA1-216ENST00000552909 SPTLC2O15270 562 aa8.46□□□□□ -1.05
LIMA1-216ENST00000552909 MSCO60682 206 aa8.46□□□□□ -1.05
LIMA1-216ENST00000552909 MCM3P25205 808 aa8.46□□□□□ -1.05
LIMA1-216ENST00000552909 RDXP35241 583 aaKnown RBP8.46□□□□□ -1.05
LIMA1-216ENST00000552909 ADCYAP1R1P41586 468 aa8.46□□□□□ -1.05
LIMA1-216ENST00000552909 ZNF569Q5MCW4 686 aa8.46□□□□□ -1.05
LIMA1-216ENST00000552909 TAPT1Q6NXT6 567 aa8.46□□□□□ -1.05
LIMA1-216ENST00000552909 FAM76AQ8TAV0 307 aa8.46□□□□□ -1.05
LIMA1-216ENST00000552909 WASF1Q92558 559 aa8.46□□□□□ -1.05
LIMA1-216ENST00000552909 GPKOWQ92917 476 aaPredicted RBP eCLIP8.46□□□□□ -1.05
LIMA1-216ENST00000552909 LZTS2Q9BRK4 669 aa8.46□□□□□ -1.05
LIMA1-216ENST00000552909 INTS13Q9NVM9 706 aa8.46□□□□□ -1.05
LIMA1-216ENST00000552909 POLR3EQ9NVU0 708 aa8.46□□□□□ -1.05
LIMA1-216ENST00000552909 NID2Q14112 1375 aa8.46□□□□□ -1.05
LIMA1-216ENST00000552909 CNTNAP5Q8WYK1 1306 aa8.46□□□□□ -1.05
LIMA1-216ENST00000552909 H0YHG0 523 aa8.46□□□□□ -1.06
LIMA1-216ENST00000552909 PRPF3O43395 683 aaKnown RBP8.46□□□□□ -1.06
LIMA1-216ENST00000552909 RARBP10826 455 aa8.46□□□□□ -1.06
LIMA1-216ENST00000552909 AKR1A1P14550 325 aa8.46□□□□□ -1.06
LIMA1-216ENST00000552909 PFKFB1P16118 471 aa8.46□□□□□ -1.06
LIMA1-216ENST00000552909 ELF1P32519 619 aa8.46□□□□□ -1.06
LIMA1-216ENST00000552909 IRAK1P51617 712 aa8.46□□□□□ -1.06
LIMA1-216ENST00000552909 HSD17B4P51659 736 aa8.46□□□□□ -1.06
LIMA1-216ENST00000552909 TRIM29Q14134 588 aa8.46□□□□□ -1.06
LIMA1-216ENST00000552909 PPP2R5AQ15172 486 aa8.46□□□□□ -1.06
LIMA1-216ENST00000552909 TYW1BQ6NUM6 668 aa8.46□□□□□ -1.06
LIMA1-216ENST00000552909 USP17L6PQ6QN14 398 aa8.46□□□□□ -1.06
LIMA1-216ENST00000552909 MCF2L2Q86YR7 1114 aa8.46□□□□□ -1.06
LIMA1-216ENST00000552909 CCDC148Q8NFR7 591 aa8.46□□□□□ -1.06
LIMA1-216ENST00000552909 MORC4Q8TE76 937 aa8.46□□□□□ -1.06
LIMA1-216ENST00000552909 RMDN3Q96TC7 470 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms