RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 GOLGA8KD6RF30 607 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 CETN3O15182 167 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 HSF2BPO75031 334 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 UCHL3P15374 230 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 PON1P27169 355 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 HOXA13P31271 388 aaPredicted RBP8.22□□□□□ -1.09
LIMA1-213ENST00000552720 ARHGAP4P98171 946 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 TCERG1LQ5VWI1 586 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 FOXR2Q6PJQ5 311 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 SIAH1Q8IUQ4 282 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 KSR1Q8IVT5 923 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 ZC3H3Q8IXZ2 948 aaKnown RBP8.22□□□□□ -1.09
LIMA1-213ENST00000552720 IFT20Q8IY31 132 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 ETNPPLQ8TBG4 499 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 LENG9Q96B70 501 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 RUFY1Q96T51 708 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 AP1M1Q9BXS5 423 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 TSPYL1Q9H0U9 437 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 POLRMTO00411 1230 aaKnown RBP8.22□□□□□ -1.09
LIMA1-213ENST00000552720 ZBTB39O15060 712 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 EIF3HO15372 352 aaKnown RBP eCLIP8.22□□□□□ -1.09
LIMA1-213ENST00000552720 OPA1O60313 960 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 GDF11O95390 407 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 GNA14O95837 355 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 TNFRSF8P28908 595 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 HOXA10P31260 410 aaPredicted RBP8.22□□□□□ -1.09
LIMA1-213ENST00000552720 NOP2P46087 812 aaKnown RBP8.22□□□□□ -1.09
LIMA1-213ENST00000552720 NNTQ13423 1086 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 SLFN13Q68D06 897 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 IQCKQ8N0W5 287 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 USP38Q8NB14 1042 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 CRYGNQ8WXF5 182 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 SPAG5Q96R06 1193 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 RUSC1Q9BVN2 902 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 ZC3H12CQ9C0D7 883 aaKnown RBP8.22□□□□□ -1.09
LIMA1-213ENST00000552720 NUCKS1Q9H1E3 243 aaKnown RBP8.22□□□□□ -1.09
LIMA1-213ENST00000552720 DBNDD1Q9H9R9 158 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 RGL1Q9NZL6 768 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 ARMCX3Q9UH62 379 aaPredicted RBP8.22□□□□□ -1.09
LIMA1-213ENST00000552720 SWAP70Q9UH65 585 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 TSKSQ9UJT2 592 aa8.22□□□□□ -1.09
LIMA1-213ENST00000552720 RBBP6Q7Z6E9 1792 aaKnown RBP8.21□□□□□ -1.09
LIMA1-213ENST00000552720 ASTN1O14525 1302 aa8.21□□□□□ -1.09
LIMA1-213ENST00000552720 SLX4Q8IY92 1834 aa8.21□□□□□ -1.09
LIMA1-213ENST00000552720 EML1O00423 815 aa8.21□□□□□ -1.09
LIMA1-213ENST00000552720 AFPP02771 609 aaKnown RBP8.21□□□□□ -1.09
LIMA1-213ENST00000552720 HLA-DOAP06340 250 aa8.21□□□□□ -1.09
LIMA1-213ENST00000552720 MAGEA9P43362 315 aa8.21□□□□□ -1.09
LIMA1-213ENST00000552720 ERVK-9P63128 1117 aa8.21□□□□□ -1.09
LIMA1-213ENST00000552720 JAG1P78504 1218 aa8.21□□□□□ -1.09
LIMA1-213ENST00000552720 GUCY1A3Q02108 690 aa8.21□□□□□ -1.09
LIMA1-213ENST00000552720 KNOP1Q1ED39 458 aaKnown RBP8.21□□□□□ -1.09
LIMA1-213ENST00000552720 EDRF1Q3B7T1 1238 aa8.21□□□□□ -1.09
LIMA1-213ENST00000552720 CFAP58Q5T655 872 aa8.21□□□□□ -1.09
LIMA1-213ENST00000552720 KIAA0825Q8IV33 1275 aa8.21□□□□□ -1.09
LIMA1-213ENST00000552720 OR2W6PQ8NHA6 318 aa8.21□□□□□ -1.09
LIMA1-213ENST00000552720 RNPC3Q96LT9 517 aaKnown RBP8.21□□□□□ -1.09
LIMA1-213ENST00000552720 COA1Q9GZY4 146 aa8.21□□□□□ -1.09
LIMA1-213ENST00000552720 NEUROG2Q9H2A3 272 aa8.21□□□□□ -1.09
LIMA1-213ENST00000552720 BHMT2Q9H2M3 363 aa8.21□□□□□ -1.09
LIMA1-213ENST00000552720 SIX2Q9NPC8 291 aa8.21□□□□□ -1.09
LIMA1-213ENST00000552720 NAGPAQ9UK23 515 aa8.21□□□□□ -1.09
LIMA1-213ENST00000552720 PCDHB13Q9Y5F0 798 aa8.21□□□□□ -1.09
LIMA1-213ENST00000552720 UTRNP46939 3433 aa8.21□□□□□ -1.1
LIMA1-213ENST00000552720 CYP3A7-CYP3A51PA0A087WV96 503 aa8.21□□□□□ -1.1
LIMA1-213ENST00000552720 STK25O00506 426 aa8.21□□□□□ -1.1
LIMA1-213ENST00000552720 MSH4O15457 936 aa8.21□□□□□ -1.1
LIMA1-213ENST00000552720 CEP104O60308 925 aa8.21□□□□□ -1.1
LIMA1-213ENST00000552720 ZEB2O60315 1214 aa8.21□□□□□ -1.1
LIMA1-213ENST00000552720 KIF4AO95239 1232 aa8.21□□□□□ -1.1
LIMA1-213ENST00000552720 GCNT3O95395 438 aa8.21□□□□□ -1.1
LIMA1-213ENST00000552720 EPB41P11171 864 aaKnown RBP8.21□□□□□ -1.1
LIMA1-213ENST00000552720 XRCC5P13010 732 aaKnown RBP8.21□□□□□ -1.1
LIMA1-213ENST00000552720 CYP3A7P24462 503 aa8.21□□□□□ -1.1
LIMA1-213ENST00000552720 ECHS1P30084 290 aa8.21□□□□□ -1.1
LIMA1-213ENST00000552720 USP11P51784 963 aa8.21□□□□□ -1.1
LIMA1-213ENST00000552720 PAK2Q13177 524 aa8.21□□□□□ -1.1
LIMA1-213ENST00000552720 RPS6KA1Q15418 735 aa8.21□□□□□ -1.1
LIMA1-213ENST00000552720 EXOC3L4Q17RC7 722 aa8.21□□□□□ -1.1
LIMA1-213ENST00000552720 GLE1Q53GS7 698 aaKnown RBP8.21□□□□□ -1.1
LIMA1-213ENST00000552720 ALS2CLQ60I27 953 aa8.21□□□□□ -1.1
LIMA1-213ENST00000552720 EPM2AIP1Q7L775 607 aaPredicted RBP8.21□□□□□ -1.1
LIMA1-213ENST00000552720 SH3BP5LQ7L8J4 393 aa8.21□□□□□ -1.1
LIMA1-213ENST00000552720 SYT2Q8N9I0 419 aaPredicted RBP8.21□□□□□ -1.1
LIMA1-213ENST00000552720 PIGOQ8TEQ8 1089 aa8.21□□□□□ -1.1
LIMA1-213ENST00000552720 RUBCNQ92622 972 aa8.21□□□□□ -1.1
LIMA1-213ENST00000552720 MBOAT7Q96N66 472 aa8.21□□□□□ -1.1
LIMA1-213ENST00000552720 CRAMP1Q96RY5 1269 aa8.21□□□□□ -1.1
LIMA1-213ENST00000552720 DDX47Q9H0S4 455 aaKnown RBP8.21□□□□□ -1.1
LIMA1-213ENST00000552720 COL11A2P13942 1736 aaPredicted RBP8.2□□□□□ -1.1
LIMA1-213ENST00000552720 TMCO5BA8MYB1 307 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 OPLAHO14841 1288 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 NR3C1P04150 777 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 ITGA4P13612 1032 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 RPA1P27694 616 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 NMT1P30419 496 aaKnown RBP8.2□□□□□ -1.1
LIMA1-213ENST00000552720 CRKP46108 304 aa8.2□□□□□ -1.1
LIMA1-213ENST00000552720 IKQ13123 557 aaPredicted RBP8.2□□□□□ -1.1
LIMA1-213ENST00000552720 CTTNQ14247 550 aaKnown RBP8.2□□□□□ -1.1
LIMA1-213ENST00000552720 HLTFQ14527 1009 aaKnown RBP eCLIP8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms