RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	CPA6	Q8N4T0	437 aa		4.97	□□□□□ -1.61
USP44-208	ENST00000552440	NKAIN3	Q8N8D7	197 aa		4.97	□□□□□ -1.61
USP44-208	ENST00000552440	SPATA5	Q8NB90	893 aa		4.97	□□□□□ -1.61
USP44-208	ENST00000552440	PPP1R13L	Q8WUF5	828 aa		4.97	□□□□□ -1.61
USP44-208	ENST00000552440	RPGR	Q92834	1020 aa	Known RBP	4.97	□□□□□ -1.61
USP44-208	ENST00000552440	CDHR1	Q96JP9	859 aa		4.97	□□□□□ -1.61
USP44-208	ENST00000552440	PPM1M	Q96MI6	270 aa		4.97	□□□□□ -1.61
USP44-208	ENST00000552440	NAA15	Q9BXJ9	866 aa	Known RBP	4.97	□□□□□ -1.61
USP44-208	ENST00000552440	KLHL25	Q9H0H3	589 aa		4.97	□□□□□ -1.61
USP44-208	ENST00000552440	KIAA1586	Q9HCI6	787 aa		4.97	□□□□□ -1.61
USP44-208	ENST00000552440	APEX2	Q9UBZ4	518 aa		4.97	□□□□□ -1.61
USP44-208	ENST00000552440	SAP30BP	Q9UHR5	308 aa	Known RBP	4.97	□□□□□ -1.61
USP44-208	ENST00000552440	CNOT6	Q9ULM6	557 aa	Known RBP	4.97	□□□□□ -1.61
USP44-208	ENST00000552440	FAM170A	A1A519	330 aa		4.96	□□□□□ -1.62
USP44-208	ENST00000552440	NEMP1	O14524	444 aa		4.96	□□□□□ -1.62
USP44-208	ENST00000552440	ABLIM1	O14639	778 aa		4.96	□□□□□ -1.62
USP44-208	ENST00000552440	DNAJC8	O75937	253 aa	Predicted RBP	4.96	□□□□□ -1.62
USP44-208	ENST00000552440	INHBB	P09529	407 aa		4.96	□□□□□ -1.62
USP44-208	ENST00000552440	PABPC1	P11940	636 aa	Known RBP	4.96	□□□□□ -1.62
USP44-208	ENST00000552440	GRIA2	P42262	883 aa		4.96	□□□□□ -1.62
USP44-208	ENST00000552440	SUMO1	P63165	101 aa	Known RBP	4.96	□□□□□ -1.62
USP44-208	ENST00000552440	TRIM14	Q14142	442 aa		4.96	□□□□□ -1.62
USP44-208	ENST00000552440	ATP13A4	Q4VNC1	1196 aa		4.96	□□□□□ -1.62
USP44-208	ENST00000552440	TRIM61	Q5EBN2	209 aa		4.96	□□□□□ -1.62
USP44-208	ENST00000552440	TCERG1L	Q5VWI1	586 aa		4.96	□□□□□ -1.62
USP44-208	ENST00000552440	HEATR6	Q6AI08	1181 aa	Known RBP	4.96	□□□□□ -1.62
USP44-208	ENST00000552440	FAM180B	Q6P0A1	224 aa		4.96	□□□□□ -1.62
USP44-208	ENST00000552440	HSCB	Q8IWL3	235 aa		4.96	□□□□□ -1.62
USP44-208	ENST00000552440	ACRBP	Q8NEB7	543 aa		4.96	□□□□□ -1.62
USP44-208	ENST00000552440	CCT6B	Q92526	530 aa		4.96	□□□□□ -1.62
USP44-208	ENST00000552440	OSBP2	Q969R2	916 aa		4.96	□□□□□ -1.62
USP44-208	ENST00000552440	AIFM3	Q96NN9	605 aa		4.96	□□□□□ -1.62
USP44-208	ENST00000552440	CENPO	Q9BU64	300 aa		4.96	□□□□□ -1.62
USP44-208	ENST00000552440	MENT	Q9BUN1	341 aa		4.96	□□□□□ -1.62
USP44-208	ENST00000552440	LGR4	Q9BXB1	951 aa		4.96	□□□□□ -1.62
USP44-208	ENST00000552440	SLC13A1	Q9BZW2	595 aa		4.96	□□□□□ -1.62
USP44-208	ENST00000552440	IFT22	Q9H7X7	185 aa		4.96	□□□□□ -1.62
USP44-208	ENST00000552440	LRP2BP	Q9P2M1	347 aa		4.96	□□□□□ -1.62
USP44-208	ENST00000552440	GIT1	Q9Y2X7	761 aa		4.96	□□□□□ -1.62
USP44-208	ENST00000552440	PCDHA11	Q9Y5I1	949 aa		4.96	□□□□□ -1.62
USP44-208	ENST00000552440		A0A1B0GVC2	190 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	OR14I1	A6ND48	311 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	TLR5	O60602	858 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	HSD3B1	P14060	373 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	ZKSCAN1	P17029	563 aa	Predicted RBP	4.95	□□□□□ -1.62
USP44-208	ENST00000552440	CAPN3	P20807	821 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	CCND1	P24385	295 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	NEK4	P51957	841 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	WASHC5	Q12768	1159 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	GRB10	Q13322	594 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	TMEM240	Q5SV17	173 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	ZNF605	Q86T29	641 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	CBARP	Q8N350	705 aa	Predicted RBP	4.95	□□□□□ -1.62
USP44-208	ENST00000552440	ATRIP	Q8WXE1	791 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	SMARCC1	Q92922	1105 aa	Predicted RBP	4.95	□□□□□ -1.62
USP44-208	ENST00000552440	USP7	Q93009	1102 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	LRGUK	Q96M69	825 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	KREMEN1	Q96MU8	473 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	TRIM39	Q9HCM9	518 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	PARD6A	Q9NPB6	346 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	TRMT13	Q9NUP7	481 aa	Known RBP	4.95	□□□□□ -1.62
USP44-208	ENST00000552440	FNIP2	Q9P278	1114 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	GPR160	Q9UJ42	338 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	SH3BP1	Q9Y3L3	701 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	AFG3L2	Q9Y4W6	797 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	SSU72P8	A0A1W2PR75	194 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	PRODH	O43272	600 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	TBX1	O43435	398 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	MBD4	O95243	580 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	C6orf222	P0C671	652 aa	Predicted RBP	4.95	□□□□□ -1.62
USP44-208	ENST00000552440	MYBL2	P10244	700 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	PYGM	P11217	842 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	GBP1	P32455	592 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	KIR2DL1	P43626	348 aa	Predicted RBP	4.95	□□□□□ -1.62
USP44-208	ENST00000552440	KIR2DL2	P43627	348 aa	Predicted RBP	4.95	□□□□□ -1.62
USP44-208	ENST00000552440	APBA1	Q02410	837 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	NEXN	Q0ZGT2	675 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	PRKG2	Q13237	762 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	PDCD2	Q16342	344 aa	Predicted RBP	4.95	□□□□□ -1.62
USP44-208	ENST00000552440	NSMF	Q6X4W1	530 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	SLC7A14	Q8TBB6	771 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	SYTL5	Q8TDW5	730 aa	Predicted RBP	4.95	□□□□□ -1.62
USP44-208	ENST00000552440	GCC1	Q96CN9	775 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	FUBP3	Q96I24	572 aa	Known RBP eCLIP	4.95	□□□□□ -1.62
USP44-208	ENST00000552440	FGD4	Q96M96	766 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	ISCA1	Q9BUE6	129 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	AP1M1	Q9BXS5	423 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	MCOLN1	Q9GZU1	580 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	MTFR1L	Q9H019	292 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	SLC12A5	Q9H2X9	1139 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	SP110	Q9HB58	689 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	CRTAC1	Q9NQ79	661 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	SMYD2	Q9NRG4	433 aa		4.95	□□□□□ -1.62
USP44-208	ENST00000552440	APOBEC2	Q9Y235	224 aa	Known RBP	4.95	□□□□□ -1.62
USP44-208	ENST00000552440	LRRFIP2	Q9Y608	721 aa	Known RBP	4.95	□□□□□ -1.62
USP44-208	ENST00000552440	ITIH6	Q6UXX5	1313 aa		4.94	□□□□□ -1.62
USP44-208	ENST00000552440	PABPN1L	A6NDY0	278 aa	Known RBP	4.94	□□□□□ -1.62
USP44-208	ENST00000552440	ZEB2	O60315	1214 aa		4.94	□□□□□ -1.62
USP44-208	ENST00000552440	CLEC3A	O75596	197 aa		4.94	□□□□□ -1.62
USP44-208	ENST00000552440	CNOT4	O95628	575 aa	Known RBP	4.94	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms