RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 CAND2O75155 1236 aa12.19□□□□□ -0.46
VPS29-208ENST00000550267 RB1P06400 928 aa12.19□□□□□ -0.46
VPS29-208ENST00000550267 NMIQ13287 307 aaPredicted RBP12.19□□□□□ -0.46
VPS29-208ENST00000550267 PGM5Q15124 567 aa12.19□□□□□ -0.46
VPS29-208ENST00000550267 BMP8AQ7Z5Y6 402 aa12.19□□□□□ -0.46
VPS29-208ENST00000550267 VSIG10LQ86VR7 867 aa12.19□□□□□ -0.46
VPS29-208ENST00000550267 APBB2Q92870 758 aa12.19□□□□□ -0.46
VPS29-208ENST00000550267 PBXIP1Q96AQ6 731 aa12.19□□□□□ -0.46
VPS29-208ENST00000550267 RNF41Q9H4P4 317 aaPredicted RBP12.19□□□□□ -0.46
VPS29-208ENST00000550267 SETD4Q9NVD3 440 aa12.19□□□□□ -0.46
VPS29-208ENST00000550267 CD207Q9UJ71 328 aa12.19□□□□□ -0.46
VPS29-208ENST00000550267 PCDHB15Q9Y5E8 787 aa12.19□□□□□ -0.46
VPS29-208ENST00000550267 WDFY4Q6ZS81 3184 aa12.19□□□□□ -0.46
VPS29-208ENST00000550267 ATG2AQ2TAZ0 1938 aa12.19□□□□□ -0.46
VPS29-208ENST00000550267 CCDC171Q6TFL3 1326 aa12.18□□□□□ -0.46
VPS29-208ENST00000550267 ADGRA3Q8IWK6 1321 aa12.18□□□□□ -0.46
VPS29-208ENST00000550267 PPP1R11O60927 126 aaPredicted RBP12.18□□□□□ -0.46
VPS29-208ENST00000550267 KDM4AO75164 1064 aa12.18□□□□□ -0.46
VPS29-208ENST00000550267 WFS1O76024 890 aa12.18□□□□□ -0.46
VPS29-208ENST00000550267 PARP1P09874 1014 aaKnown RBP12.18□□□□□ -0.46
VPS29-208ENST00000550267 HOXA13P31271 388 aaPredicted RBP12.18□□□□□ -0.46
VPS29-208ENST00000550267 GHRHRQ02643 423 aa12.18□□□□□ -0.46
VPS29-208ENST00000550267 TCF15Q12870 199 aa12.18□□□□□ -0.46
VPS29-208ENST00000550267 ADAM15Q13444 863 aa12.18□□□□□ -0.46
VPS29-208ENST00000550267 FAM26DQ5JW98 314 aa12.18□□□□□ -0.46
VPS29-208ENST00000550267 STOX1Q6ZVD7 989 aa12.18□□□□□ -0.46
VPS29-208ENST00000550267 USB1Q9BQ65 265 aaKnown RBP12.18□□□□□ -0.46
VPS29-208ENST00000550267 AMNQ9BXJ7 453 aa12.18□□□□□ -0.46
VPS29-208ENST00000550267 RC3H2Q9HBD1 1191 aaKnown RBP12.18□□□□□ -0.46
VPS29-208ENST00000550267 ALG13Q9NP73 1137 aaKnown RBP12.18□□□□□ -0.46
VPS29-208ENST00000550267 SUPT16HQ9Y5B9 1047 aaKnown RBP12.18□□□□□ -0.46
VPS29-208ENST00000550267 DXOO77932 396 aaKnown RBP12.17□□□□□ -0.46
VPS29-208ENST00000550267 MMP1P03956 469 aa12.17□□□□□ -0.46
VPS29-208ENST00000550267 TGFB3P10600 412 aa12.17□□□□□ -0.46
VPS29-208ENST00000550267 CCND2P30279 289 aa12.17□□□□□ -0.46
VPS29-208ENST00000550267 NDUFV1P49821 464 aa12.17□□□□□ -0.46
VPS29-208ENST00000550267 ARHGAP4P98171 946 aa12.17□□□□□ -0.46
VPS29-208ENST00000550267 CAMK1Q14012 370 aa12.17□□□□□ -0.46
VPS29-208ENST00000550267 IQCA1Q86XH1 822 aa12.17□□□□□ -0.46
VPS29-208ENST00000550267 TRIM50Q86XT4 487 aa12.17□□□□□ -0.46
VPS29-208ENST00000550267 STAG2Q8N3U4 1231 aa12.17□□□□□ -0.46
VPS29-208ENST00000550267 ENAHQ8N8S7 591 aaPredicted RBP12.17□□□□□ -0.46
VPS29-208ENST00000550267 CLP1Q92989 425 aaKnown RBP12.17□□□□□ -0.46
VPS29-208ENST00000550267 MSLNLQ96KJ4 702 aa12.17□□□□□ -0.46
VPS29-208ENST00000550267 ZSCAN10Q96SZ4 725 aaPredicted RBP12.17□□□□□ -0.46
VPS29-208ENST00000550267 FAM86C1Q9NVL1 165 aa12.17□□□□□ -0.46
VPS29-208ENST00000550267 RWDD3Q9Y3V2 267 aa12.17□□□□□ -0.46
VPS29-208ENST00000550267 TELO2Q9Y4R8 837 aa12.17□□□□□ -0.46
VPS29-208ENST00000550267 MYH7BA7E2Y1 1941 aa12.17□□□□□ -0.46
VPS29-208ENST00000550267 B4E1Z4 1266 aa12.16□□□□□ -0.46
VPS29-208ENST00000550267 NOP56O00567 594 aaKnown RBP12.16□□□□□ -0.46
VPS29-208ENST00000550267 ZNF213O14771 459 aa12.16□□□□□ -0.46
VPS29-208ENST00000550267 CHRNA1P02708 482 aa12.16□□□□□ -0.46
VPS29-208ENST00000550267 GHRP10912 638 aa12.16□□□□□ -0.46
VPS29-208ENST00000550267 GNAT1P11488 350 aa12.16□□□□□ -0.46
VPS29-208ENST00000550267 DNAJB1P25685 340 aa12.16□□□□□ -0.46
VPS29-208ENST00000550267 PDE1AP54750 535 aa12.16□□□□□ -0.46
VPS29-208ENST00000550267 ADAM17P78536 824 aa12.16□□□□□ -0.46
VPS29-208ENST00000550267 ZXDAP98168 799 aa12.16□□□□□ -0.46
VPS29-208ENST00000550267 BTG3Q14201 252 aaPredicted RBP12.16□□□□□ -0.46
VPS29-208ENST00000550267 CCDC178Q5BJE1 867 aa12.16□□□□□ -0.46
VPS29-208ENST00000550267 ANKRD45Q5TZF3 282 aa12.16□□□□□ -0.46
VPS29-208ENST00000550267 ADGRD2Q7Z7M1 963 aa12.16□□□□□ -0.46
VPS29-208ENST00000550267 SUGP1Q8IWZ8 645 aaKnown RBP12.16□□□□□ -0.46
VPS29-208ENST00000550267 LMBR1Q8WVP7 490 aa12.16□□□□□ -0.46
VPS29-208ENST00000550267 ZNF689Q96CS4 500 aaPredicted RBP12.16□□□□□ -0.46
VPS29-208ENST00000550267 MRGPRX2Q96LB1 330 aa12.16□□□□□ -0.46
VPS29-208ENST00000550267 MAP3K20Q9NYL2 800 aaKnown RBP12.16□□□□□ -0.46
VPS29-208ENST00000550267 ZNF318Q5VUA4 2279 aa12.15□□□□□ -0.46
VPS29-208ENST00000550267 LOC730098B7Z3J9 87 aa12.15□□□□□ -0.46
VPS29-208ENST00000550267 ENPP3O14638 875 aa12.15□□□□□ -0.46
VPS29-208ENST00000550267 EYA4O95677 639 aa12.15□□□□□ -0.46
VPS29-208ENST00000550267 RRP1P56182 461 aaKnown RBP12.15□□□□□ -0.46
VPS29-208ENST00000550267 USP46P62068 366 aa12.15□□□□□ -0.46
VPS29-208ENST00000550267 LPIN1Q14693 890 aa12.15□□□□□ -0.46
VPS29-208ENST00000550267 UTP14CQ5TAP6 766 aaKnown RBP12.15□□□□□ -0.46
VPS29-208ENST00000550267 RUFY4Q6ZNE9 571 aa12.15□□□□□ -0.46
VPS29-208ENST00000550267 CYFIP1Q7L576 1253 aa12.15□□□□□ -0.46
VPS29-208ENST00000550267 FCHSD1Q86WN1 690 aa12.15□□□□□ -0.46
VPS29-208ENST00000550267 FBXL6Q8N531 539 aa12.15□□□□□ -0.46
VPS29-208ENST00000550267 GPR20Q99678 358 aa12.15□□□□□ -0.46
VPS29-208ENST00000550267 PRRX2Q99811 253 aa12.15□□□□□ -0.46
VPS29-208ENST00000550267 REPIN1Q9BWE0 567 aaKnown RBP12.15□□□□□ -0.46
VPS29-208ENST00000550267 USP26Q9BXU7 913 aa12.15□□□□□ -0.46
VPS29-208ENST00000550267 EHMT1Q9H9B1 1298 aa12.15□□□□□ -0.46
VPS29-208ENST00000550267 CLEC1BQ9P126 229 aa12.15□□□□□ -0.46
VPS29-208ENST00000550267 ZSWIM5Q9P217 1185 aa12.15□□□□□ -0.46
VPS29-208ENST00000550267 PLAGL2Q9UPG8 496 aa12.15□□□□□ -0.46
VPS29-208ENST00000550267 PCDHA1Q9Y5I3 950 aa12.15□□□□□ -0.46
VPS29-208ENST00000550267 MRPL42Q9Y6G3 142 aaKnown RBP12.15□□□□□ -0.46
VPS29-208ENST00000550267 GCOM1H8Y6P7 765 aaPredicted RBP12.14□□□□□ -0.47
VPS29-208ENST00000550267 DGKIO75912 1065 aa12.14□□□□□ -0.47
VPS29-208ENST00000550267 POLR2MP0CAP2 368 aa12.14□□□□□ -0.47
VPS29-208ENST00000550267 VCPP55072 806 aaKnown RBP12.14□□□□□ -0.47
VPS29-208ENST00000550267 MRPS9P82933 396 aaKnown RBP12.14□□□□□ -0.47
VPS29-208ENST00000550267 SP4Q02446 784 aa12.14□□□□□ -0.47
VPS29-208ENST00000550267 MGAT3Q09327 533 aa12.14□□□□□ -0.47
VPS29-208ENST00000550267 SEMA3FQ13275 785 aa12.14□□□□□ -0.47
VPS29-208ENST00000550267 PKN1Q16512 942 aa12.14□□□□□ -0.47
VPS29-208ENST00000550267 METTL7BQ6UX53 244 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms