RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 RB1P06400 928 aa12.35□□□□□ -0.43
VTI1BP3-201ENST00000550220 FAM86B2P0C5J1 330 aa12.35□□□□□ -0.43
VTI1BP3-201ENST00000550220 GHRP10912 638 aa12.35□□□□□ -0.43
VTI1BP3-201ENST00000550220 KRT76Q01546 638 aa12.35□□□□□ -0.43
VTI1BP3-201ENST00000550220 MGAT3Q09327 533 aa12.35□□□□□ -0.43
VTI1BP3-201ENST00000550220 LPIN1Q14693 890 aa12.35□□□□□ -0.43
VTI1BP3-201ENST00000550220 NTRK3Q16288 839 aa12.35□□□□□ -0.43
VTI1BP3-201ENST00000550220 FBXO47Q5MNV8 452 aa12.35□□□□□ -0.43
VTI1BP3-201ENST00000550220 GALNT17Q6IS24 598 aa12.35□□□□□ -0.43
VTI1BP3-201ENST00000550220 ZNF710Q8N1W2 664 aa12.35□□□□□ -0.43
VTI1BP3-201ENST00000550220 ADAMTS19Q8TE59 1207 aa12.35□□□□□ -0.43
VTI1BP3-201ENST00000550220 ATP8B4Q8TF62 1192 aa12.35□□□□□ -0.43
VTI1BP3-201ENST00000550220 BBXQ8WY36 941 aaPredicted RBP12.35□□□□□ -0.43
VTI1BP3-201ENST00000550220 SLC26A6Q9BXS9 759 aa12.35□□□□□ -0.43
VTI1BP3-201ENST00000550220 ZNF302Q9NR11 478 aa12.35□□□□□ -0.43
VTI1BP3-201ENST00000550220 CEP131Q9UPN4 1083 aa12.35□□□□□ -0.43
VTI1BP3-201ENST00000550220 PCDHA10Q9Y5I2 948 aa12.35□□□□□ -0.43
VTI1BP3-201ENST00000550220 CDY2AQ9Y6F7 541 aa12.35□□□□□ -0.43
VTI1BP3-201ENST00000550220 KDM3AQ9Y4C1 1321 aa12.35□□□□□ -0.43
VTI1BP3-201ENST00000550220 COL1A2P08123 1366 aa12.34□□□□□ -0.43
VTI1BP3-201ENST00000550220 CHD9Q3L8U1 2897 aa12.34□□□□□ -0.43
VTI1BP3-201ENST00000550220 IGLV3-22A0A075B6J6 115 aa12.34□□□□□ -0.43
VTI1BP3-201ENST00000550220 DHX15O43143 795 aaKnown RBP12.34□□□□□ -0.43
VTI1BP3-201ENST00000550220 UPP2O95045 317 aa12.34□□□□□ -0.43
VTI1BP3-201ENST00000550220 PSAPP07602 524 aa12.34□□□□□ -0.43
VTI1BP3-201ENST00000550220 NLRP5P59047 1200 aa12.34□□□□□ -0.43
VTI1BP3-201ENST00000550220 SSRP1Q08945 709 aaKnown RBP12.34□□□□□ -0.43
VTI1BP3-201ENST00000550220 EPC2Q52LR7 807 aa12.34□□□□□ -0.43
VTI1BP3-201ENST00000550220 PRR16Q569H4 304 aa12.34□□□□□ -0.43
VTI1BP3-201ENST00000550220 SWSAP1Q6NVH7 229 aa12.34□□□□□ -0.43
VTI1BP3-201ENST00000550220 PDXDC2PQ6P474 469 aa12.34□□□□□ -0.43
VTI1BP3-201ENST00000550220 MTHFD1LQ6UB35 978 aa12.34□□□□□ -0.43
VTI1BP3-201ENST00000550220 FIBCD1Q8N539 461 aa12.34□□□□□ -0.43
VTI1BP3-201ENST00000550220 PHKBQ93100 1093 aa12.34□□□□□ -0.43
VTI1BP3-201ENST00000550220 UHRF1Q96T88 793 aaPredicted RBP12.34□□□□□ -0.43
VTI1BP3-201ENST00000550220 CELF4Q9BZC1 486 aaKnown RBP12.34□□□□□ -0.43
VTI1BP3-201ENST00000550220 FAM49AQ9H0Q0 323 aaPredicted RBP12.34□□□□□ -0.43
VTI1BP3-201ENST00000550220 MTUS1Q9ULD2 1270 aa12.34□□□□□ -0.43
VTI1BP3-201ENST00000550220 TRPV2Q9Y5S1 764 aa12.34□□□□□ -0.43
VTI1BP3-201ENST00000550220 PRRC2BQ5JSZ5 2229 aaKnown RBP12.34□□□□□ -0.43
VTI1BP3-201ENST00000550220 PRUNE2Q8WUY3 3088 aa12.33□□□□□ -0.44
VTI1BP3-201ENST00000550220 H3BNC9 293 aa12.33□□□□□ -0.44
VTI1BP3-201ENST00000550220 DDX39AO00148 427 aaKnown RBP12.33□□□□□ -0.44
VTI1BP3-201ENST00000550220 MAGEB2O15479 319 aa12.33□□□□□ -0.44
VTI1BP3-201ENST00000550220 NCK2O43639 380 aa12.33□□□□□ -0.44
VTI1BP3-201ENST00000550220 CDKL5O76039 1030 aa12.33□□□□□ -0.44
VTI1BP3-201ENST00000550220 DEXIO95424 95 aa12.33□□□□□ -0.44
VTI1BP3-201ENST00000550220 CCNE2O96020 404 aa12.33□□□□□ -0.44
VTI1BP3-201ENST00000550220 STAG3L1P0CL83 205 aa12.33□□□□□ -0.44
VTI1BP3-201ENST00000550220 BMP1P13497 986 aa12.33□□□□□ -0.44
VTI1BP3-201ENST00000550220 KLRC1P26715 233 aa12.33□□□□□ -0.44
VTI1BP3-201ENST00000550220 CCT2P78371 535 aaKnown RBP12.33□□□□□ -0.44
VTI1BP3-201ENST00000550220 TMEM192Q8IY95 271 aa12.33□□□□□ -0.44
VTI1BP3-201ENST00000550220 CKAP2LQ8IYA6 745 aa12.33□□□□□ -0.44
VTI1BP3-201ENST00000550220 GDPD5Q8WTR4 605 aa12.33□□□□□ -0.44
VTI1BP3-201ENST00000550220 MRPL38Q96DV4 380 aaKnown RBP12.33□□□□□ -0.44
VTI1BP3-201ENST00000550220 FAM167AQ96KS9 214 aa12.33□□□□□ -0.44
VTI1BP3-201ENST00000550220 RIT2Q99578 217 aa12.33□□□□□ -0.44
VTI1BP3-201ENST00000550220 MAFBQ9Y5Q3 323 aaPredicted RBP12.33□□□□□ -0.44
VTI1BP3-201ENST00000550220 IGSF9BQ9UPX0 1349 aa12.33□□□□□ -0.44
VTI1BP3-201ENST00000550220 C5orf67F2Z3F1 127 aa12.32□□□□□ -0.44
VTI1BP3-201ENST00000550220 XBP1P17861 261 aa12.32□□□□□ -0.44
VTI1BP3-201ENST00000550220 PAK2Q13177 524 aa12.32□□□□□ -0.44
VTI1BP3-201ENST00000550220 GPM6BQ13491 265 aa12.32□□□□□ -0.44
VTI1BP3-201ENST00000550220 TIGD5Q53EQ6 642 aa12.32□□□□□ -0.44
VTI1BP3-201ENST00000550220 KRT40Q6A162 431 aa12.32□□□□□ -0.44
VTI1BP3-201ENST00000550220 CCDC60Q8IWA6 550 aaPredicted RBP12.32□□□□□ -0.44
VTI1BP3-201ENST00000550220 C17orf80Q9BSJ5 609 aa12.32□□□□□ -0.44
VTI1BP3-201ENST00000550220 C11orf84Q9BUA3 381 aaPredicted RBP12.32□□□□□ -0.44
VTI1BP3-201ENST00000550220 PLVAPQ9BX97 442 aa12.32□□□□□ -0.44
VTI1BP3-201ENST00000550220 OSBPL7Q9BZF2 842 aa12.32□□□□□ -0.44
VTI1BP3-201ENST00000550220 LMAN2LQ9H0V9 348 aa12.32□□□□□ -0.44
VTI1BP3-201ENST00000550220 NRBP2Q9NSY0 501 aa12.32□□□□□ -0.44
VTI1BP3-201ENST00000550220 PDRG1Q9NUG6 133 aa12.32□□□□□ -0.44
VTI1BP3-201ENST00000550220 VPS54Q9P1Q0 977 aa12.32□□□□□ -0.44
VTI1BP3-201ENST00000550220 PCDHA4Q9UN74 947 aa12.32□□□□□ -0.44
VTI1BP3-201ENST00000550220 SAMM50Q9Y512 469 aa12.32□□□□□ -0.44
VTI1BP3-201ENST00000550220 VCANP13611 3396 aa12.32□□□□□ -0.44
VTI1BP3-201ENST00000550220 WDR64B1ANS9 1081 aa12.31□□□□□ -0.44
VTI1BP3-201ENST00000550220 GPR182O15218 404 aa12.31□□□□□ -0.44
VTI1BP3-201ENST00000550220 TMOD1P28289 359 aa12.31□□□□□ -0.44
VTI1BP3-201ENST00000550220 CD52P31358 61 aa12.31□□□□□ -0.44
VTI1BP3-201ENST00000550220 SFNP31947 248 aa12.31□□□□□ -0.44
VTI1BP3-201ENST00000550220 BMPR1AP36894 532 aa12.31□□□□□ -0.44
VTI1BP3-201ENST00000550220 JAK3P52333 1124 aa12.31□□□□□ -0.44
VTI1BP3-201ENST00000550220 TOB2Q14106 344 aaPredicted RBP12.31□□□□□ -0.44
VTI1BP3-201ENST00000550220 BTG3Q14201 252 aaPredicted RBP12.31□□□□□ -0.44
VTI1BP3-201ENST00000550220 ANKRD1Q15327 319 aa12.31□□□□□ -0.44
VTI1BP3-201ENST00000550220 PUS10Q3MIT2 529 aaKnown RBP12.31□□□□□ -0.44
VTI1BP3-201ENST00000550220 NAALADL2Q58DX5 795 aa12.31□□□□□ -0.44
VTI1BP3-201ENST00000550220 SPRED2Q7Z698 418 aa12.31□□□□□ -0.44
VTI1BP3-201ENST00000550220 NPAS4Q8IUM7 802 aa12.31□□□□□ -0.44
VTI1BP3-201ENST00000550220 RDM1Q8NG50 284 aa12.31□□□□□ -0.44
VTI1BP3-201ENST00000550220 AGO3Q9H9G7 860 aaKnown RBP12.31□□□□□ -0.44
VTI1BP3-201ENST00000550220 C1orf112Q9NSG2 853 aa12.31□□□□□ -0.44
VTI1BP3-201ENST00000550220 PPP4R2Q9NY27 417 aa12.31□□□□□ -0.44
VTI1BP3-201ENST00000550220 PADI3Q9ULW8 664 aa12.31□□□□□ -0.44
VTI1BP3-201ENST00000550220 NCOR1O75376 2440 aa12.31□□□□□ -0.44
VTI1BP3-201ENST00000550220 CHD7Q9P2D1 2997 aa12.3□□□□□ -0.44
VTI1BP3-201ENST00000550220 EYSQ5T1H1 3165 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms