RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 POTEGQ6S5H5 508 aa23.74■■□□□ 1.39
VPS29-206ENST00000549578 SHC4Q6S5L8 630 aa23.74■■□□□ 1.39
VPS29-206ENST00000549578 CABP7Q86V35 215 aa23.74■■□□□ 1.39
VPS29-206ENST00000549578 ZNF579Q8NAF0 562 aaKnown RBP23.74■■□□□ 1.39
VPS29-206ENST00000549578 ZSWIM4Q9H7M6 989 aa23.74■■□□□ 1.39
VPS29-206ENST00000549578 MKI67P46013 3256 aaKnown RBP23.74■■□□□ 1.39
VPS29-206ENST00000549578 A0A087WWV3 80 aa23.74■■□□□ 1.39
VPS29-206ENST00000549578 OATP04181 439 aa23.74■■□□□ 1.39
VPS29-206ENST00000549578 C11orf49Q9H6J7 331 aa23.74■■□□□ 1.39
VPS29-206ENST00000549578 TRPC6Q9Y210 931 aa23.74■■□□□ 1.39
VPS29-206ENST00000549578 STK24Q9Y6E0 443 aa23.74■■□□□ 1.39
VPS29-206ENST00000549578 TMEM150BA6NC51 233 aa23.73■■□□□ 1.39
VPS29-206ENST00000549578 STBD1O95210 358 aa23.73■■□□□ 1.39
VPS29-206ENST00000549578 ITGA7Q13683 1181 aa23.73■■□□□ 1.39
VPS29-206ENST00000549578 C4orf19Q8IY42 314 aa23.73■■□□□ 1.39
VPS29-206ENST00000549578 ATP8B4Q8TF62 1192 aa23.73■■□□□ 1.39
VPS29-206ENST00000549578 PLIN2Q99541 437 aa23.73■■□□□ 1.39
VPS29-206ENST00000549578 ZBTB39O15060 712 aa23.72■■□□□ 1.39
VPS29-206ENST00000549578 DKC1O60832 514 aaKnown RBP eCLIP23.72■■□□□ 1.39
VPS29-206ENST00000549578 SMIM10L2AP0DMW4 78 aa23.72■■□□□ 1.39
VPS29-206ENST00000549578 SMIM10L2BP0DMW5 78 aa23.72■■□□□ 1.39
VPS29-206ENST00000549578 ATN1P54259 1190 aaPredicted RBP23.72■■□□□ 1.39
VPS29-206ENST00000549578 KARSQ15046 597 aaKnown RBP23.72■■□□□ 1.39
VPS29-206ENST00000549578 NECAB2Q7Z6G3 386 aa23.72■■□□□ 1.39
VPS29-206ENST00000549578 UBE2Q1Q7Z7E8 422 aa23.72■■□□□ 1.39
VPS29-206ENST00000549578 PNMA5Q96PV4 448 aa23.72■■□□□ 1.39
VPS29-206ENST00000549578 CCSER1Q9C0I3 900 aa23.72■■□□□ 1.39
VPS29-206ENST00000549578 DDX19AQ9NUU7 478 aaKnown RBP23.72■■□□□ 1.39
VPS29-206ENST00000549578 HDAC6Q9UBN7 1215 aa23.72■■□□□ 1.39
VPS29-206ENST00000549578 SEPT9Q9UHD8 586 aaPredicted RBP23.72■■□□□ 1.39
VPS29-206ENST00000549578 KIAA1024Q9UPX6 916 aa23.72■■□□□ 1.39
VPS29-206ENST00000549578 A0A0U1RQG5 324 aaPredicted RBP23.71■■□□□ 1.39
VPS29-206ENST00000549578 GRB10Q13322 594 aa23.71■■□□□ 1.39
VPS29-206ENST00000549578 XKR3Q5GH77 459 aa23.71■■□□□ 1.39
VPS29-206ENST00000549578 FAM47CQ5HY64 1035 aa23.71■■□□□ 1.39
VPS29-206ENST00000549578 ADALQ6DHV7 355 aa23.71■■□□□ 1.39
VPS29-206ENST00000549578 CLEC17AQ6ZS10 378 aa23.71■■□□□ 1.39
VPS29-206ENST00000549578 ANO5Q75V66 913 aa23.71■■□□□ 1.39
VPS29-206ENST00000549578 C7orf31Q8N865 590 aa23.71■■□□□ 1.39
VPS29-206ENST00000549578 RASSF8Q8NHQ8 419 aa23.71■■□□□ 1.39
VPS29-206ENST00000549578 PIGOQ8TEQ8 1089 aa23.71■■□□□ 1.39
VPS29-206ENST00000549578 BBXQ8WY36 941 aaPredicted RBP23.71■■□□□ 1.39
VPS29-206ENST00000549578 FAM167AQ96KS9 214 aa23.71■■□□□ 1.39
VPS29-206ENST00000549578 SH2D3AQ9BRG2 576 aa23.71■■□□□ 1.39
VPS29-206ENST00000549578 KDM3AQ9Y4C1 1321 aa23.71■■□□□ 1.39
VPS29-206ENST00000549578 DDX11L8A8MPP1 907 aa23.7■■□□□ 1.38
VPS29-206ENST00000549578 LYPLA2O95372 231 aa23.7■■□□□ 1.38
VPS29-206ENST00000549578 YWHABP31946 246 aaKnown RBP23.7■■□□□ 1.38
VPS29-206ENST00000549578 TXLNAP40222 546 aa23.7■■□□□ 1.38
VPS29-206ENST00000549578 RESP18Q5W5W9 173 aa23.7■■□□□ 1.38
VPS29-206ENST00000549578 PLA2G4FQ68DD2 849 aa23.7■■□□□ 1.38
VPS29-206ENST00000549578 CDK5RAP3Q96JB5 506 aa23.7■■□□□ 1.38
VPS29-206ENST00000549578 HBP1O60381 514 aa23.69■■□□□ 1.38
VPS29-206ENST00000549578 INSRRP14616 1297 aa23.69■■□□□ 1.38
VPS29-206ENST00000549578 PPFIA1Q13136 1202 aa23.69■■□□□ 1.38
VPS29-206ENST00000549578 CSPP1Q1MSJ5 1256 aa23.69■■□□□ 1.38
VPS29-206ENST00000549578 HYIQ5T013 277 aa23.69■■□□□ 1.38
VPS29-206ENST00000549578 NFRKBQ6P4R8 1299 aa23.69■■□□□ 1.38
VPS29-206ENST00000549578 KCNK18Q7Z418 384 aa23.69■■□□□ 1.38
VPS29-206ENST00000549578 TRAPPC12Q8WVT3 735 aa23.69■■□□□ 1.38
VPS29-206ENST00000549578 CALML4Q96GE6 196 aa23.69■■□□□ 1.38
VPS29-206ENST00000549578 NRBP2Q9NSY0 501 aa23.69■■□□□ 1.38
VPS29-206ENST00000549578 SETD4Q9NVD3 440 aa23.69■■□□□ 1.38
VPS29-206ENST00000549578 A0A087X0B3 334 aa23.69■■□□□ 1.38
VPS29-206ENST00000549578 ARVCFO00192 962 aa23.69■■□□□ 1.38
VPS29-206ENST00000549578 PLCG1P19174 1290 aa23.69■■□□□ 1.38
VPS29-206ENST00000549578 MUTP22033 750 aa23.69■■□□□ 1.38
VPS29-206ENST00000549578 IGBP1P78318 339 aa23.69■■□□□ 1.38
VPS29-206ENST00000549578 HIC1Q14526 733 aa23.69■■□□□ 1.38
VPS29-206ENST00000549578 GRIK4Q16099 956 aa23.69■■□□□ 1.38
VPS29-206ENST00000549578 TMEM119Q4V9L6 283 aa23.69■■□□□ 1.38
VPS29-206ENST00000549578 SLC39A5Q6ZMH5 540 aa23.69■■□□□ 1.38
VPS29-206ENST00000549578 SLC43A3Q8NBI5 491 aa23.69■■□□□ 1.38
VPS29-206ENST00000549578 TMEM87AQ8NBN3 555 aa23.69■■□□□ 1.38
VPS29-206ENST00000549578 GBP4Q96PP9 640 aa23.69■■□□□ 1.38
VPS29-206ENST00000549578 NACC1Q96RE7 527 aa23.69■■□□□ 1.38
VPS29-206ENST00000549578 PANK2Q9BZ23 570 aa23.69■■□□□ 1.38
VPS29-206ENST00000549578 GTF2IRD1Q9UHL9 959 aa23.69■■□□□ 1.38
VPS29-206ENST00000549578 ZBTB42B2RXF5 422 aa23.68■■□□□ 1.38
VPS29-206ENST00000549578 CMA1P23946 247 aa23.68■■□□□ 1.38
VPS29-206ENST00000549578 NPEPPSP55786 919 aa23.68■■□□□ 1.38
VPS29-206ENST00000549578 MTERF2Q49AM1 385 aa23.68■■□□□ 1.38
VPS29-206ENST00000549578 PDILTQ8N807 584 aa23.68■■□□□ 1.38
VPS29-206ENST00000549578 LRRC15Q8TF66 581 aa23.68■■□□□ 1.38
VPS29-206ENST00000549578 LMBR1Q8WVP7 490 aa23.68■■□□□ 1.38
VPS29-206ENST00000549578 NIFKQ9BYG3 293 aaKnown RBP23.68■■□□□ 1.38
VPS29-206ENST00000549578 NT5C3AQ9H0P0 336 aa23.68■■□□□ 1.38
VPS29-206ENST00000549578 A0A1B0GVL5 298 aa23.67■■□□□ 1.38
VPS29-206ENST00000549578 A0A1W2PQ27 194 aa23.67■■□□□ 1.38
VPS29-206ENST00000549578 A0A1W2PQ64 194 aa23.67■■□□□ 1.38
VPS29-206ENST00000549578 A0A1W2PQD8 194 aa23.67■■□□□ 1.38
VPS29-206ENST00000549578 GOLGA6L4A6NEF3 574 aa23.67■■□□□ 1.38
VPS29-206ENST00000549578 E9PMD0 336 aa23.67■■□□□ 1.38
VPS29-206ENST00000549578 SLC26A4O43511 780 aa23.67■■□□□ 1.38
VPS29-206ENST00000549578 ZNF200P98182 395 aaPredicted RBP23.67■■□□□ 1.38
VPS29-206ENST00000549578 GDF6Q6KF10 455 aaPredicted RBP23.67■■□□□ 1.38
VPS29-206ENST00000549578 SESTD1Q86VW0 696 aa23.67■■□□□ 1.38
VPS29-206ENST00000549578 ZBTB10Q96DT7 871 aa23.67■■□□□ 1.38
VPS29-206ENST00000549578 FAM13BQ9NYF5 915 aa23.67■■□□□ 1.38
VPS29-206ENST00000549578 CCDC39Q9UFE4 941 aa23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms