RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 ASTN1O14525 1302 aa12.22□□□□□ -0.45
CUX1-212ENST00000547394 CETN3O15182 167 aa12.21□□□□□ -0.45
CUX1-212ENST00000547394 TLR2O60603 784 aa12.21□□□□□ -0.45
CUX1-212ENST00000547394 PPP1R2P41236 205 aa12.21□□□□□ -0.45
CUX1-212ENST00000547394 KIF11P52732 1056 aa12.21□□□□□ -0.45
CUX1-212ENST00000547394 HIRAP54198 1017 aaPredicted RBP12.21□□□□□ -0.45
CUX1-212ENST00000547394 TNFAIP1Q13829 316 aa12.21□□□□□ -0.45
CUX1-212ENST00000547394 BAATQ14032 418 aaPredicted RBP12.21□□□□□ -0.45
CUX1-212ENST00000547394 PLA2G4FQ68DD2 849 aa12.21□□□□□ -0.45
CUX1-212ENST00000547394 C1orf186Q6ZWK4 172 aa12.21□□□□□ -0.45
CUX1-212ENST00000547394 TRIM59Q8IWR1 403 aa12.21□□□□□ -0.45
CUX1-212ENST00000547394 FAM133AQ8N9E0 248 aa12.21□□□□□ -0.45
CUX1-212ENST00000547394 ZSWIM2Q8NEG5 633 aa12.21□□□□□ -0.45
CUX1-212ENST00000547394 ELMO3Q96BJ8 720 aa12.21□□□□□ -0.45
CUX1-212ENST00000547394 RMDN3Q96TC7 470 aa12.21□□□□□ -0.45
CUX1-212ENST00000547394 NAPGQ99747 312 aaPredicted RBP12.21□□□□□ -0.45
CUX1-212ENST00000547394 POLR3CQ9BUI4 534 aaPredicted RBP12.21□□□□□ -0.45
CUX1-212ENST00000547394 TEKT3Q9BXF9 490 aa12.21□□□□□ -0.45
CUX1-212ENST00000547394 SLC38A10Q9HBR0 1119 aa12.21□□□□□ -0.45
CUX1-212ENST00000547394 SMARCAL1Q9NZC9 954 aa12.21□□□□□ -0.45
CUX1-212ENST00000547394 SALL4Q9UJQ4 1053 aa12.21□□□□□ -0.45
CUX1-212ENST00000547394 WDR46O15213 610 aaKnown RBP12.21□□□□□ -0.45
CUX1-212ENST00000547394 BUB1O43683 1085 aa12.21□□□□□ -0.45
CUX1-212ENST00000547394 USO1O60763 962 aaKnown RBP12.21□□□□□ -0.45
CUX1-212ENST00000547394 MOCS3O95396 460 aa12.21□□□□□ -0.45
CUX1-212ENST00000547394 FGFR1OPO95684 399 aaKnown RBP12.21□□□□□ -0.45
CUX1-212ENST00000547394 NR3C1P04150 777 aa12.21□□□□□ -0.45
CUX1-212ENST00000547394 TKFCQ3LXA3 575 aa12.21□□□□□ -0.45
CUX1-212ENST00000547394 ODR4Q5SWX8 454 aa12.21□□□□□ -0.45
CUX1-212ENST00000547394 MIER3Q7Z3K6 550 aa12.21□□□□□ -0.45
CUX1-212ENST00000547394 NUP58Q9BVL2 599 aa12.21□□□□□ -0.45
CUX1-212ENST00000547394 KIAA1683Q9H0B3 1180 aa12.21□□□□□ -0.45
CUX1-212ENST00000547394 PCIF1Q9H4Z3 704 aa12.21□□□□□ -0.45
CUX1-212ENST00000547394 AJAP1Q9UKB5 411 aaPredicted RBP12.21□□□□□ -0.45
CUX1-212ENST00000547394 TGFB1I1O43294 461 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 CTNND1O60716 968 aaKnown RBP12.2□□□□□ -0.46
CUX1-212ENST00000547394 LRRN2O75325 713 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 CXCR5P32302 372 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 HSD17B4P51659 736 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 NPEPPSP55786 919 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 MAP3K10Q02779 954 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 PPP2R5CQ13362 524 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 MTMR1Q13613 665 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 MTERF4Q7Z6M4 381 aaKnown RBP12.2□□□□□ -0.46
CUX1-212ENST00000547394 NOA1Q8NC60 698 aaKnown RBP12.2□□□□□ -0.46
CUX1-212ENST00000547394 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.2□□□□□ -0.464e-6■■■■□ 23.2
CUX1-212ENST00000547394 KIFC3Q9BVG8 833 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 IFIH1Q9BYX4 1025 aaKnown RBP12.2□□□□□ -0.46
CUX1-212ENST00000547394 PPP1R9AQ9ULJ8 1098 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 CAPN6Q9Y6Q1 641 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 DNAH12Q6ZR08 3092 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 CEP350Q5VT06 3117 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 HIP1RO75146 1068 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 IPO7O95373 1038 aaKnown RBP12.2□□□□□ -0.46
CUX1-212ENST00000547394 TRIM49P0CI25 452 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 TRIM49CP0CI26 452 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 CYLC1P35663 651 aaPredicted RBP12.2□□□□□ -0.46
CUX1-212ENST00000547394 CHMP4BP1P59074 171 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 SNRNP48Q6IEG0 339 aaKnown RBP12.2□□□□□ -0.46
CUX1-212ENST00000547394 FAM84AQ96KN4 292 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 EHD2Q9NZN4 543 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 ARMCX3Q9UH62 379 aaPredicted RBP12.2□□□□□ -0.46
CUX1-212ENST00000547394 PLAGL2Q9UPG8 496 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 PITPNM2Q9BZ72 1349 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 ARHGEF35A5YM69 484 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 VWA5AO00534 786 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 NCK2O43639 380 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 DDNO94850 711 aaPredicted RBP12.2□□□□□ -0.46
CUX1-212ENST00000547394 PTPRAP18433 802 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 SEMA3FQ13275 785 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 RNF207Q6ZRF8 634 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 EPM2AIP1Q7L775 607 aaPredicted RBP12.2□□□□□ -0.46
CUX1-212ENST00000547394 PICK1Q9NRD5 415 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 RNF146Q9NTX7 359 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 CDC23Q9UJX2 597 aa12.2□□□□□ -0.46
CUX1-212ENST00000547394 ZMYM2Q9UBW7 1377 aa12.19□□□□□ -0.46
CUX1-212ENST00000547394 FZD9O00144 591 aa12.19□□□□□ -0.46
CUX1-212ENST00000547394 DHX15O43143 795 aaKnown RBP12.19□□□□□ -0.46
CUX1-212ENST00000547394 NAP1L1P55209 391 aaKnown RBP12.19□□□□□ -0.46
CUX1-212ENST00000547394 BACE1P56817 501 aa12.19□□□□□ -0.46
CUX1-212ENST00000547394 SPA17Q15506 151 aa12.19□□□□□ -0.46
CUX1-212ENST00000547394 PDXDC1Q6P996 788 aa12.19□□□□□ -0.46
CUX1-212ENST00000547394 FAM178BQ8IXR5 827 aa12.19□□□□□ -0.46
CUX1-212ENST00000547394 DAW1Q8N136 415 aa12.19□□□□□ -0.46
CUX1-212ENST00000547394 PACSIN1Q9BY11 444 aa12.19□□□□□ -0.46
CUX1-212ENST00000547394 PARD6BQ9BYG5 372 aa12.19□□□□□ -0.46
CUX1-212ENST00000547394 SUGCTQ9HAC7 445 aa12.19□□□□□ -0.46
CUX1-212ENST00000547394 PARVGQ9HBI0 331 aa12.19□□□□□ -0.46
CUX1-212ENST00000547394 USP20Q9Y2K6 914 aa12.19□□□□□ -0.46
CUX1-212ENST00000547394 PCDHA13Q9Y5I0 950 aa12.19□□□□□ -0.46
CUX1-212ENST00000547394 FHOD1Q9Y613 1164 aa12.19□□□□□ -0.46
CUX1-212ENST00000547394 EFCAB8A8MWE9 144 aa12.19□□□□□ -0.46
CUX1-212ENST00000547394 ZMYND10O75800 440 aa12.19□□□□□ -0.46
CUX1-212ENST00000547394 FSTL1Q12841 308 aa12.19□□□□□ -0.46
CUX1-212ENST00000547394 PGM5Q15124 567 aa12.19□□□□□ -0.46
CUX1-212ENST00000547394 ARHGEF16Q5VV41 709 aa12.19□□□□□ -0.46
CUX1-212ENST00000547394 PADI6Q6TGC4 694 aa12.19□□□□□ -0.46
CUX1-212ENST00000547394 MOB2Q70IA6 237 aa12.19□□□□□ -0.46
CUX1-212ENST00000547394 RETREG2Q8NC44 543 aa12.19□□□□□ -0.46
CUX1-212ENST00000547394 GOLPH3Q9H4A6 298 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms