RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 SPATA4Q8NEY3 305 aa17.03■□□□□ 0.32
CUX1-211ENST00000546411 NKIRAS1Q9NYS0 192 aa17.03■□□□□ 0.32
CUX1-211ENST00000546411 NRXN3Q9Y4C0 1643 aa17.03■□□□□ 0.32
CUX1-211ENST00000546411 NFAT5O94916 1531 aa17.03■□□□□ 0.32
CUX1-211ENST00000546411 SLC9A1P19634 815 aa17.03■□□□□ 0.32
CUX1-211ENST00000546411 ADCY8P40145 1251 aa17.03■□□□□ 0.32
CUX1-211ENST00000546411 IGBP1P78318 339 aa17.03■□□□□ 0.32
CUX1-211ENST00000546411 ZBTB16Q05516 673 aa17.03■□□□□ 0.32
CUX1-211ENST00000546411 NNTQ13423 1086 aa17.03■□□□□ 0.32
CUX1-211ENST00000546411 TRIP13Q15645 432 aaPredicted RBP17.03■□□□□ 0.32
CUX1-211ENST00000546411 CCDC93Q567U6 631 aa17.03■□□□□ 0.32
CUX1-211ENST00000546411 PADI6Q6TGC4 694 aa17.03■□□□□ 0.32
CUX1-211ENST00000546411 EXOC4Q96A65 974 aa17.03■□□□□ 0.32
CUX1-211ENST00000546411 DAAM1Q9Y4D1 1078 aa17.03■□□□□ 0.32
CUX1-211ENST00000546411 SLC16A4O15374 487 aa17.02■□□□□ 0.32
CUX1-211ENST00000546411 ASNSP08243 561 aa17.02■□□□□ 0.32
CUX1-211ENST00000546411 NT5C2P49902 561 aa17.02■□□□□ 0.32
CUX1-211ENST00000546411 USP14P54578 494 aa17.02■□□□□ 0.32
CUX1-211ENST00000546411 FAM20AQ96MK3 541 aa17.02■□□□□ 0.32
CUX1-211ENST00000546411 ACCSQ96QU6 501 aa17.02■□□□□ 0.32
CUX1-211ENST00000546411 REEP2Q9BRK0 252 aa17.02■□□□□ 0.32
CUX1-211ENST00000546411 DNAJC5Q9H3Z4 198 aa17.02■□□□□ 0.32
CUX1-211ENST00000546411 TBC1D8O95759 1140 aa17.02■□□□□ 0.32
CUX1-211ENST00000546411 GAS8O95995 478 aa17.02■□□□□ 0.32
CUX1-211ENST00000546411 BAG6P46379 1132 aa17.02■□□□□ 0.32
CUX1-211ENST00000546411 OSTNP61366 133 aa17.02■□□□□ 0.32
CUX1-211ENST00000546411 ZC2HC1CQ53FD0 456 aaPredicted RBP17.02■□□□□ 0.32
CUX1-211ENST00000546411 CRAMP1Q96RY5 1269 aa17.02■□□□□ 0.32
CUX1-211ENST00000546411 RMDN3Q96TC7 470 aa17.02■□□□□ 0.32
CUX1-211ENST00000546411 GOLGA8KD6RF30 607 aa17.02■□□□□ 0.31
CUX1-211ENST00000546411 ZSCAN20P17040 1043 aaPredicted RBP17.02■□□□□ 0.31
CUX1-211ENST00000546411 SARSP49591 514 aaKnown RBP17.02■□□□□ 0.31
CUX1-211ENST00000546411 CEP63Q96MT8 703 aa17.02■□□□□ 0.31
CUX1-211ENST00000546411 MYO1FO00160 1098 aa17.01■□□□□ 0.31
CUX1-211ENST00000546411 EZRP15311 586 aaKnown RBP17.01■□□□□ 0.31
CUX1-211ENST00000546411 SPP2Q13103 211 aa17.01■□□□□ 0.31
CUX1-211ENST00000546411 PDCLQ13371 301 aa17.01■□□□□ 0.31
CUX1-211ENST00000546411 PDXDC1Q6P996 788 aa17.01■□□□□ 0.31
CUX1-211ENST00000546411 PNMA8AQ86V59 439 aaPredicted RBP17.01■□□□□ 0.31
CUX1-211ENST00000546411 INTS13Q9NVM9 706 aa17.01■□□□□ 0.31
CUX1-211ENST00000546411 GRB10Q13322 594 aa17.01■□□□□ 0.31
CUX1-211ENST00000546411 MTMR3Q13615 1198 aa17.01■□□□□ 0.31
CUX1-211ENST00000546411 NAALADL2Q58DX5 795 aa17.01■□□□□ 0.31
CUX1-211ENST00000546411 DNAAF5Q86Y56 855 aa17.01■□□□□ 0.31
CUX1-211ENST00000546411 LXNQ9BS40 222 aa17.01■□□□□ 0.31
CUX1-211ENST00000546411 ANO9A1A5B4 782 aa17.01■□□□□ 0.31
CUX1-211ENST00000546411 MYBP10242 640 aa17.01■□□□□ 0.31
CUX1-211ENST00000546411 NSFP46459 744 aaKnown RBP17.01■□□□□ 0.31
CUX1-211ENST00000546411 DRAP1Q14919 205 aaPredicted RBP17.01■□□□□ 0.31
CUX1-211ENST00000546411 PPP4R3CPQ6ZMV5 832 aa17.01■□□□□ 0.31
CUX1-211ENST00000546411 GADL1Q6ZQY3 521 aa17.01■□□□□ 0.31
CUX1-211ENST00000546411 ZNF668Q96K58 619 aaPredicted RBP17.01■□□□□ 0.31
CUX1-211ENST00000546411 PPP1R16BQ96T49 567 aa17.01■□□□□ 0.31
CUX1-211ENST00000546411 TRPC6Q9Y210 931 aa17.01■□□□□ 0.31
CUX1-211ENST00000546411 ITIH6Q6UXX5 1313 aa17.01■□□□□ 0.31
CUX1-211ENST00000546411 N4BP1O75113 896 aaKnown RBP17.01■□□□□ 0.31
CUX1-211ENST00000546411 KRT15P19012 456 aa17.01■□□□□ 0.31
CUX1-211ENST00000546411 USP11P51784 963 aa17.01■□□□□ 0.31
CUX1-211ENST00000546411 GTF2A1P52655 376 aaPredicted RBP17.01■□□□□ 0.31
CUX1-211ENST00000546411 MTMR1Q13613 665 aa17.01■□□□□ 0.31
CUX1-211ENST00000546411 CDKAL1Q5VV42 579 aa17.01■□□□□ 0.31
CUX1-211ENST00000546411 TTI2Q6NXR4 508 aa17.01■□□□□ 0.31
CUX1-211ENST00000546411 CCDC63Q8NA47 563 aa17.01■□□□□ 0.31
CUX1-211ENST00000546411 FBXO28Q9NVF7 368 aa17.01■□□□□ 0.31
CUX1-211ENST00000546411 KBTBD4Q9NVX7 518 aa17.01■□□□□ 0.31
CUX1-211ENST00000546411 MKRN4PQ13434 485 aaPredicted RBP17■□□□□ 0.31
CUX1-211ENST00000546411 SAAL1Q96ER3 474 aa17■□□□□ 0.31
CUX1-211ENST00000546411 PNKPQ96T60 521 aa17■□□□□ 0.31
CUX1-211ENST00000546411 MAK16Q9BXY0 300 aaKnown RBP17■□□□□ 0.31
CUX1-211ENST00000546411 RXRBP28702 533 aa17■□□□□ 0.31
CUX1-211ENST00000546411 TRIM65Q6PJ69 517 aa17■□□□□ 0.31
CUX1-211ENST00000546411 NUDT12Q9BQG2 462 aa17■□□□□ 0.31
CUX1-211ENST00000546411 PDS5AQ29RF7 1337 aaKnown RBP17■□□□□ 0.31
CUX1-211ENST00000546411 PIK3CAP42336 1068 aa17■□□□□ 0.31
CUX1-211ENST00000546411 PRELPP51888 382 aa17■□□□□ 0.31
CUX1-211ENST00000546411 PTK2Q05397 1052 aa17■□□□□ 0.31
CUX1-211ENST00000546411 ZNF394Q53GI3 561 aa17■□□□□ 0.31
CUX1-211ENST00000546411 TYW1Q9NV66 732 aaKnown RBP17■□□□□ 0.31
CUX1-211ENST00000546411 SNX12Q9UMY4 172 aa17■□□□□ 0.31
CUX1-211ENST00000546411 RRP15Q9Y3B9 282 aaKnown RBP17■□□□□ 0.31
CUX1-211ENST00000546411 CAPN7Q9Y6W3 813 aa17■□□□□ 0.31
CUX1-211ENST00000546411 MFAP3P55082 362 aa16.99■□□□□ 0.31
CUX1-211ENST00000546411 MDM2Q00987 491 aaPredicted RBP16.99■□□□□ 0.31
CUX1-211ENST00000546411 DCAF15Q66K64 600 aa16.99■□□□□ 0.31
CUX1-211ENST00000546411 LDHDQ86WU2 507 aa16.99■□□□□ 0.31
CUX1-211ENST00000546411 VPS37BQ9H9H4 285 aa16.99■□□□□ 0.31
CUX1-211ENST00000546411 PRR12Q9ULL5 1215 aa16.99■□□□□ 0.31
CUX1-211ENST00000546411 CD58P19256 250 aa16.99■□□□□ 0.31
CUX1-211ENST00000546411 PPP1R18Q6NYC8 613 aa16.99■□□□□ 0.31
CUX1-211ENST00000546411 TTC16Q8NEE8 873 aa16.99■□□□□ 0.31
CUX1-211ENST00000546411 COG1Q8WTW3 980 aa16.99■□□□□ 0.31
CUX1-211ENST00000546411 SNX24Q9Y343 169 aa16.99■□□□□ 0.31
CUX1-211ENST00000546411 RSPH10B2B2RC85 870 aa16.99■□□□□ 0.31
CUX1-211ENST00000546411 RSPH10BP0C881 870 aa16.99■□□□□ 0.31
CUX1-211ENST00000546411 ZRSR2Q15696 482 aaKnown RBP16.99■□□□□ 0.31
CUX1-211ENST00000546411 SLC7A3Q8WY07 619 aa16.99■□□□□ 0.31
CUX1-211ENST00000546411 ATP6V0A1Q93050 837 aa16.99■□□□□ 0.31
CUX1-211ENST00000546411 SERPINA10Q9UK55 444 aa16.99■□□□□ 0.31
CUX1-211ENST00000546411 PCDHB4Q9Y5E5 795 aa16.99■□□□□ 0.31
CUX1-211ENST00000546411 VIRMAQ69YN4 1812 aaKnown RBP16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms