RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 SP4Q02446 784 aa17.92■□□□□ 0.46
CLSTN3-216ENST00000545663 SPECC1Q5M775 1068 aa17.92■□□□□ 0.46
CLSTN3-216ENST00000545663 VPS53Q5VIR6 699 aa17.92■□□□□ 0.46
CLSTN3-216ENST00000545663 TAF2Q6P1X5 1199 aa17.92■□□□□ 0.46
CLSTN3-216ENST00000545663 CASP10Q92851 521 aa17.92■□□□□ 0.46
CLSTN3-216ENST00000545663 VAT1LQ9HCJ6 419 aa17.92■□□□□ 0.46
CLSTN3-216ENST00000545663 TCP11L1Q9NUJ3 509 aa17.92■□□□□ 0.46
CLSTN3-216ENST00000545663 ANAPC4Q9UJX5 808 aa17.92■□□□□ 0.46
CLSTN3-216ENST00000545663 FAM208BQ5VWN6 2430 aa17.91■□□□□ 0.46
CLSTN3-216ENST00000545663 KRBA1A5PL33 1030 aa17.91■□□□□ 0.46
CLSTN3-216ENST00000545663 NARSO43776 548 aaKnown RBP17.91■□□□□ 0.46
CLSTN3-216ENST00000545663 HMMRO75330 724 aa17.91■□□□□ 0.46
CLSTN3-216ENST00000545663 MTHFRP42898 656 aa17.91■□□□□ 0.46
CLSTN3-216ENST00000545663 MRPS6P82932 125 aaKnown RBP17.91■□□□□ 0.46
CLSTN3-216ENST00000545663 TMEM62Q0P6H9 643 aa17.91■□□□□ 0.46
CLSTN3-216ENST00000545663 TDGQ13569 410 aa17.91■□□□□ 0.46
CLSTN3-216ENST00000545663 MARCH8Q5T0T0 291 aa17.91■□□□□ 0.46
CLSTN3-216ENST00000545663 STOX1Q6ZVD7 989 aa17.91■□□□□ 0.46
CLSTN3-216ENST00000545663 RSPH3Q86UC2 560 aa17.91■□□□□ 0.46
CLSTN3-216ENST00000545663 PLCD3Q8N3E9 789 aa17.91■□□□□ 0.46
CLSTN3-216ENST00000545663 MRPS27Q92552 414 aaKnown RBP17.91■□□□□ 0.46
CLSTN3-216ENST00000545663 FTHL17Q9BXU8 183 aa17.91■□□□□ 0.46
CLSTN3-216ENST00000545663 CYP26B1Q9NR63 512 aa17.91■□□□□ 0.46
CLSTN3-216ENST00000545663 DBR1Q9UK59 544 aaKnown RBP17.91■□□□□ 0.46
CLSTN3-216ENST00000545663 SETXQ7Z333 2677 aaKnown RBP17.91■□□□□ 0.46
CLSTN3-216ENST00000545663 SPEGQ15772 3267 aa17.9■□□□□ 0.46
CLSTN3-216ENST00000545663 EOMESO95936 686 aa17.9■□□□□ 0.46
CLSTN3-216ENST00000545663 ADRB1P08588 477 aa17.9■□□□□ 0.46
CLSTN3-216ENST00000545663 PBX3P40426 434 aa17.9■□□□□ 0.46
CLSTN3-216ENST00000545663 TMEM266Q2M3C6 531 aa17.9■□□□□ 0.46
CLSTN3-216ENST00000545663 FAM49AQ9H0Q0 323 aaPredicted RBP17.9■□□□□ 0.46
CLSTN3-216ENST00000545663 CWH43Q9H720 699 aa17.9■□□□□ 0.46
CLSTN3-216ENST00000545663 ZNF215Q9UL58 517 aaPredicted RBP17.9■□□□□ 0.46
CLSTN3-216ENST00000545663 PCDHB7Q9Y5E2 793 aa17.9■□□□□ 0.46
CLSTN3-216ENST00000545663 ZFYVE26Q68DK2 2539 aa17.9■□□□□ 0.46
CLSTN3-216ENST00000545663 CLASP2O75122 1294 aaKnown RBP17.89■□□□□ 0.45
CLSTN3-216ENST00000545663 DCNP07585 359 aaKnown RBP17.89■□□□□ 0.45
CLSTN3-216ENST00000545663 CFHP08603 1231 aa17.89■□□□□ 0.45
CLSTN3-216ENST00000545663 PPFIA1Q13136 1202 aa17.89■□□□□ 0.45
CLSTN3-216ENST00000545663 SEMA3FQ13275 785 aa17.89■□□□□ 0.45
CLSTN3-216ENST00000545663 COL9A3Q14050 684 aaPredicted RBP17.89■□□□□ 0.45
CLSTN3-216ENST00000545663 ZMYM1Q5SVZ6 1142 aa17.89■□□□□ 0.45
CLSTN3-216ENST00000545663 GPATCH4Q5T3I0 446 aaKnown RBP17.89■□□□□ 0.45
CLSTN3-216ENST00000545663 METTL7BQ6UX53 244 aa17.89■□□□□ 0.45
CLSTN3-216ENST00000545663 TMC7Q7Z402 723 aa17.89■□□□□ 0.45
CLSTN3-216ENST00000545663 LRRCC1Q9C099 1032 aa17.89■□□□□ 0.45
CLSTN3-216ENST00000545663 JMJD4Q9H9V9 463 aa17.89■□□□□ 0.45
CLSTN3-216ENST00000545663 KCNK12Q9HB15 430 aa17.89■□□□□ 0.45
CLSTN3-216ENST00000545663 NGRNQ9NPE2 291 aaKnown RBP17.89■□□□□ 0.45
CLSTN3-216ENST00000545663 TUBE1Q9UJT0 475 aa17.89■□□□□ 0.45
CLSTN3-216ENST00000545663 DUSP12Q9UNI6 340 aa17.89■□□□□ 0.45
CLSTN3-216ENST00000545663 LZTS1Q9Y250 596 aa17.89■□□□□ 0.45
CLSTN3-216ENST00000545663 MGEA5O60502 916 aa17.88■□□□□ 0.45
CLSTN3-216ENST00000545663 MARK3P27448 753 aa17.88■□□□□ 0.45
CLSTN3-216ENST00000545663 CCND2P30279 289 aa17.88■□□□□ 0.45
CLSTN3-216ENST00000545663 SARSP49591 514 aaKnown RBP17.88■□□□□ 0.45
CLSTN3-216ENST00000545663 IGBP1P78318 339 aa17.88■□□□□ 0.45
CLSTN3-216ENST00000545663 PLCB3Q01970 1234 aa17.88■□□□□ 0.45
CLSTN3-216ENST00000545663 GRIK4Q16099 956 aa17.88■□□□□ 0.45
CLSTN3-216ENST00000545663 ATAT1Q5SQI0 421 aa17.88■□□□□ 0.45
CLSTN3-216ENST00000545663 ZC3H14Q6PJT7 736 aaKnown RBP17.88■□□□□ 0.45
CLSTN3-216ENST00000545663 ZKSCAN3Q9BRR0 538 aa17.88■□□□□ 0.45
CLSTN3-216ENST00000545663 RNF216Q9NWF9 866 aaPredicted RBP17.88■□□□□ 0.45
CLSTN3-216ENST00000545663 PUF60Q9UHX1 559 aaKnown RBP17.88■□□□□ 0.45
CLSTN3-216ENST00000545663 USTQ9Y2C2 406 aa17.88■□□□□ 0.45
CLSTN3-216ENST00000545663 MBLAC1A4D2B0 266 aaPredicted RBP17.87■□□□□ 0.45
CLSTN3-216ENST00000545663 C2orf71A6NGG8 1288 aa17.87■□□□□ 0.45
CLSTN3-216ENST00000545663 POTEMA6NI47 508 aa17.87■□□□□ 0.45
CLSTN3-216ENST00000545663 SPATA31C2B4DYI2 1134 aa17.87■□□□□ 0.45
CLSTN3-216ENST00000545663 FGFR1P11362 822 aa17.87■□□□□ 0.45
CLSTN3-216ENST00000545663 PAK2Q13177 524 aa17.87■□□□□ 0.45
CLSTN3-216ENST00000545663 VARS2Q5ST30 1063 aaKnown RBP17.87■□□□□ 0.45
CLSTN3-216ENST00000545663 KIAA1841Q6NSI8 718 aa17.87■□□□□ 0.45
CLSTN3-216ENST00000545663 POTEGQ6S5H5 508 aa17.87■□□□□ 0.45
CLSTN3-216ENST00000545663 MRPL43Q8N983 215 aaKnown RBP17.87■□□□□ 0.45
CLSTN3-216ENST00000545663 TTC14Q96N46 770 aa17.87■□□□□ 0.45
CLSTN3-216ENST00000545663 RTEL1Q9NZ71 1219 aa17.87■□□□□ 0.45
CLSTN3-216ENST00000545663 NCDNQ9UBB6 729 aa17.87■□□□□ 0.45
CLSTN3-216ENST00000545663 CDV3Q9UKY7 258 aaKnown RBP17.87■□□□□ 0.45
CLSTN3-216ENST00000545663 CA14Q9ULX7 337 aa17.87■□□□□ 0.45
CLSTN3-216ENST00000545663 DOCK5Q9H7D0 1870 aa17.86■□□□□ 0.45
CLSTN3-216ENST00000545663 DHX16O60231 1041 aaKnown RBP17.86■□□□□ 0.45
CLSTN3-216ENST00000545663 PPP1R11O60927 126 aaPredicted RBP17.86■□□□□ 0.45
CLSTN3-216ENST00000545663 SDHBP21912 280 aa17.86■□□□□ 0.45
CLSTN3-216ENST00000545663 MRPS9P82933 396 aaKnown RBP17.86■□□□□ 0.45
CLSTN3-216ENST00000545663 GHRHRQ02643 423 aa17.86■□□□□ 0.45
CLSTN3-216ENST00000545663 LRRC55Q6ZSA7 311 aa17.86■□□□□ 0.45
CLSTN3-216ENST00000545663 FCHSD1Q86WN1 690 aa17.86■□□□□ 0.45
CLSTN3-216ENST00000545663 C1orf210Q8IVY1 113 aa17.86■□□□□ 0.45
CLSTN3-216ENST00000545663 MAML2Q8IZL2 1156 aaPredicted RBP17.86■□□□□ 0.45
CLSTN3-216ENST00000545663 RSAD2Q8WXG1 361 aa17.86■□□□□ 0.45
CLSTN3-216ENST00000545663 COL26A1Q96A83 441 aa17.86■□□□□ 0.45
CLSTN3-216ENST00000545663 TBC1D17Q9HA65 648 aa17.86■□□□□ 0.45
CLSTN3-216ENST00000545663 DLGAP2Q9P1A6 1054 aa17.86■□□□□ 0.45
CLSTN3-216ENST00000545663 CEP295Q9C0D2 2601 aa17.86■□□□□ 0.45
CLSTN3-216ENST00000545663 EPCAMP16422 314 aa17.85■□□□□ 0.45
CLSTN3-216ENST00000545663 PDE4AP27815 886 aa17.85■□□□□ 0.45
CLSTN3-216ENST00000545663 TBC1D8BQ0IIM8 1120 aa17.85■□□□□ 0.45
CLSTN3-216ENST00000545663 NFX1Q12986 1120 aaKnown RBP17.85■□□□□ 0.45
CLSTN3-216ENST00000545663 NEDD9Q14511 834 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms