RNA–Protein interactions for RNA: ENST00000543397.1

SRGAP1-206, Transcript of SLIT-ROBO Rho GTPase activating protein 1, humanhuman

TSL 1 (best) BASIC

Gene SRGAP1, Length 5,652 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP1-206ENST00000543397 PFDN4Q9NQP4 134 aa7.48□□□□□ -1.21
SRGAP1-206ENST00000543397 CPSF3Q9UKF6 684 aaKnown RBP7.48□□□□□ -1.21
SRGAP1-206ENST00000543397 CSF1RP07333 972 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 TXNP10599 105 aaKnown RBP7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 HOXA7P31268 230 aaPredicted RBP7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 EVCP57679 992 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 ZNF445P59923 1031 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 CCDC6Q16204 474 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 PPP1R2P3Q6NXS1 205 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 URGCPQ8TCY9 931 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 TRIM11Q96F44 468 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 TIGD1Q96MW7 591 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 TMEM63CQ9P1W3 806 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 KDM6AO15550 1401 aaPredicted RBP7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 ZC3H13Q5T200 1668 aaKnown RBP7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 IPO5O00410 1097 aaKnown RBP7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 COPB1P53618 953 aaKnown RBP7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 TNFAIP2Q03169 654 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 MAN2A1Q16706 1144 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 AP1ARQ63HQ0 302 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 RYBPQ8N488 228 aaPredicted RBP7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 AFAP1L2Q8N4X5 818 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 KIF9Q9HAQ2 790 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 SEPT10Q9P0V9 454 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 NOC2LQ9Y3T9 749 aaKnown RBP7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 WDR19Q8NEZ3 1342 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 NRXN1Q9ULB1 1477 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 DYNC1I1O14576 645 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 LRRN2O75325 713 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 C6orf222P0C671 652 aaPredicted RBP7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 CD58P19256 250 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 QARSP47897 775 aaKnown RBP7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 BFSP1Q12934 665 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 ZNF568Q3ZCX4 644 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 ZNF658Q5TYW1 1059 aaPredicted RBP7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 RINT1Q6NUQ1 792 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 SWSAP1Q6NVH7 229 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 SNX32Q86XE0 403 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 CCDC68Q9H2F9 335 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 PRR12Q9ULL5 1215 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 P4HBP07237 508 aaKnown RBP7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 CYP2B6P20813 491 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 PKP1Q13835 747 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 C1orf228Q6PIY5 440 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 PADI6Q6TGC4 694 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 CYB5R4Q7L1T6 521 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 CTAGE3PQ8IX95 158 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 THEM5Q8N1Q8 247 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 LBHD1Q9BQE6 289 aaPredicted RBP7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 MXD3Q9BW11 206 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 C2orf40Q9H1Z8 148 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 SLC38A10Q9HBR0 1119 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 GOLGA8SH3BPF8 625 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 GMNNO75496 209 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 VIMP08670 466 aaKnown RBP7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 MAN1A1P33908 653 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 ZNF667Q5HYK9 610 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 CPLX4Q7Z7G2 160 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 OR6B3Q8NGW1 331 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 MGARPQ8TDB4 240 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 GCOM2Q9BZD3 368 aaPredicted RBP7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 SLC8A2Q9UPR5 921 aa7.47□□□□□ -1.21
SRGAP1-206ENST00000543397 POTEMA6NI47 508 aa7.46□□□□□ -1.21
SRGAP1-206ENST00000543397 KCNK3O14649 394 aa7.46□□□□□ -1.21
SRGAP1-206ENST00000543397 CD53P19397 219 aa7.46□□□□□ -1.21
SRGAP1-206ENST00000543397 CUL4BQ13620 913 aa7.46□□□□□ -1.21
SRGAP1-206ENST00000543397 DNAJC21Q5F1R6 531 aaKnown RBP7.46□□□□□ -1.21
SRGAP1-206ENST00000543397 CROCCP2Q86T23 111 aa7.46□□□□□ -1.21
SRGAP1-206ENST00000543397 RHPN2Q8IUC4 686 aa7.46□□□□□ -1.21
SRGAP1-206ENST00000543397 SMYD4Q8IYR2 804 aaPredicted RBP7.46□□□□□ -1.21
SRGAP1-206ENST00000543397 MB21D1Q8N884 522 aa7.46□□□□□ -1.21
SRGAP1-206ENST00000543397 MTRQ99707 1265 aa7.46□□□□□ -1.21
SRGAP1-206ENST00000543397 RAB17Q9H0T7 212 aa7.46□□□□□ -1.21
SRGAP1-206ENST00000543397 STK36Q9NRP7 1315 aa7.46□□□□□ -1.21
SRGAP1-206ENST00000543397 GOLGA8IPA6NC78 632 aa7.46□□□□□ -1.22
SRGAP1-206ENST00000543397 GOLGA8JA6NMD2 632 aa7.46□□□□□ -1.22
SRGAP1-206ENST00000543397 NDUFB10O96000 172 aa7.46□□□□□ -1.22
SRGAP1-206ENST00000543397 VEGFAP15692 232 aaPredicted RBP7.46□□□□□ -1.22
SRGAP1-206ENST00000543397 PPP2R5EQ16537 467 aa7.46□□□□□ -1.22
SRGAP1-206ENST00000543397 SCARA5Q6ZMJ2 495 aa7.46□□□□□ -1.22
SRGAP1-206ENST00000543397 OR6J1Q8NGC5 347 aa7.46□□□□□ -1.22
SRGAP1-206ENST00000543397 ATP2A3Q93084 1043 aa7.46□□□□□ -1.22
SRGAP1-206ENST00000543397 TMEM39BQ9GZU3 492 aa7.46□□□□□ -1.22
SRGAP1-206ENST00000543397 MTMR4Q9NYA4 1195 aa7.46□□□□□ -1.22
SRGAP1-206ENST00000543397 RCOR1Q9UKL0 485 aa7.46□□□□□ -1.22
SRGAP1-206ENST00000543397 CCNE1P24864 410 aa7.46□□□□□ -1.22
SRGAP1-206ENST00000543397 PSMC5P62195 406 aa7.46□□□□□ -1.22
SRGAP1-206ENST00000543397 MUM1L1Q5H9M0 696 aa7.46□□□□□ -1.22
SRGAP1-206ENST00000543397 ELMOD1Q8N336 334 aa7.46□□□□□ -1.22
SRGAP1-206ENST00000543397 CCDC110Q8TBZ0 833 aa7.46□□□□□ -1.22
SRGAP1-206ENST00000543397 FBXO41Q8TF61 875 aa7.46□□□□□ -1.22
SRGAP1-206ENST00000543397 GRK7Q8WTQ7 553 aa7.46□□□□□ -1.22
SRGAP1-206ENST00000543397 HEXIM2Q96MH2 286 aaKnown RBP7.46□□□□□ -1.22
SRGAP1-206ENST00000543397 VCPKMTQ9H867 229 aa7.46□□□□□ -1.22
SRGAP1-206ENST00000543397 VPS37BQ9H9H4 285 aa7.46□□□□□ -1.22
SRGAP1-206ENST00000543397 LY9Q9HBG7 655 aa7.46□□□□□ -1.22
SRGAP1-206ENST00000543397 BARHL2Q9NY43 387 aa7.46□□□□□ -1.22
SRGAP1-206ENST00000543397 GCNT4Q9P109 453 aa7.46□□□□□ -1.22
SRGAP1-206ENST00000543397 GRXCR2A6NFK2 248 aa7.46□□□□□ -1.22
SRGAP1-206ENST00000543397 SFI1A8K8P3 1242 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms