RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 NPLOC4Q8TAT6 608 aa11.47□□□□□ -0.57
CHFR-219ENST00000541341 USP6NLQ92738 828 aa11.47□□□□□ -0.57
CHFR-219ENST00000541341 CAVIN3Q969G5 261 aa11.47□□□□□ -0.57
CHFR-219ENST00000541341 JAKMIP2Q96AA8 810 aa11.47□□□□□ -0.57
CHFR-219ENST00000541341 APBA2Q99767 749 aa11.47□□□□□ -0.57
CHFR-219ENST00000541341 SENP6Q9GZR1 1112 aaPredicted RBP11.47□□□□□ -0.57
CHFR-219ENST00000541341 TACC3Q9Y6A5 838 aa11.47□□□□□ -0.57
CHFR-219ENST00000541341 MCM3APO60318 1980 aa11.47□□□□□ -0.57
CHFR-219ENST00000541341 GOLGA6L10A6NI86 522 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 MINDY4BA8MYZ0 360 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 B4E1Z4 1266 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 USP17L15C9J2P7 530 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 USP17L13C9JLJ4 530 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 USP17L11C9JVI0 530 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 USP17L18D6R9N7 530 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 USP17L22D6RA61 530 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 USP17L17D6RBQ6 530 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 USP17L19D6RCP7 530 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 USP17L20D6RJB6 530 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 SMIM22K7EJ46 135 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 EIF3HO15372 352 aaKnown RBP eCLIP11.46□□□□□ -0.57
CHFR-219ENST00000541341 VCAM1P19320 739 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 CDC27P30260 824 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 BMP8BP34820 402 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 SHMT1P34896 483 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 TOB1P50616 345 aaPredicted RBP11.46□□□□□ -0.57
CHFR-219ENST00000541341 ATP2C1P98194 919 aaPredicted RBP11.46□□□□□ -0.57
CHFR-219ENST00000541341 CTDSPL2Q05D32 466 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 USP17L24Q0WX57 530 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 MAP2K5Q13163 448 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 COBLL1Q53SF7 1204 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 CCDC181Q5TID7 509 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 CYB5R4Q7L1T6 521 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 TBC1D10CQ8IV04 446 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 MB21D1Q8N884 522 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 CPLX3Q8WVH0 158 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 SECISBP2LQ93073 1101 aaKnown RBP11.46□□□□□ -0.57
CHFR-219ENST00000541341 PHKBQ93100 1093 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 AK8Q96MA6 479 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 PHF20Q9BVI0 1012 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 RPAP3Q9H6T3 665 aaPredicted RBP11.46□□□□□ -0.57
CHFR-219ENST00000541341 ACTR5Q9H9F9 607 aaPredicted RBP11.46□□□□□ -0.57
CHFR-219ENST00000541341 ZNF287Q9HBT7 754 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 ZSWIM5Q9P217 1185 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 GUCA1BQ9UMX6 200 aa11.46□□□□□ -0.57
CHFR-219ENST00000541341 ZNF236Q9UL36 1845 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 GRID2IPA4D2P6 1211 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 SYF2O95926 243 aaKnown RBP11.45□□□□□ -0.58
CHFR-219ENST00000541341 XRCC5P13010 732 aaKnown RBP11.45□□□□□ -0.58
CHFR-219ENST00000541341 KIF5BP33176 963 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 GUCY1A2P33402 732 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 CDK8P49336 464 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 GNAQP50148 359 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 IRAK1P51617 712 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 ATP2B2Q01814 1243 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 IFFO1Q0D2I5 559 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 PLS1Q14651 629 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 CLUL1Q15846 466 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 TTC38Q5R3I4 469 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 GJC2Q5T442 439 aaPredicted RBP11.45□□□□□ -0.58
CHFR-219ENST00000541341 CATSPERGQ6ZRH7 1159 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 CROCCP2Q86T23 111 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 CD302Q8IX05 232 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 ZNF654Q8IZM8 581 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 OTUD6BQ8N6M0 293 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 SLC44A5Q8NCS7 719 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 TRPV1Q8NER1 839 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 WHAMMQ8TF30 809 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 NELFBQ8WX92 580 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 DYNLL2Q96FJ2 89 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 CABS1Q96KC9 395 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 TRERF1Q96PN7 1200 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 SELENOOQ9BVL4 669 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 TANGO6Q9C0B7 1094 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 ZSWIM4Q9H7M6 989 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 CABP5Q9NP86 173 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 FAM217BQ9NTX9 383 aaPredicted RBP11.45□□□□□ -0.58
CHFR-219ENST00000541341 GINM1Q9NU53 330 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 EXOC1Q9NV70 894 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 HYOU1Q9Y4L1 999 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 A0A0C4DFX4 3053 aa11.45□□□□□ -0.58
CHFR-219ENST00000541341 A0A1W2PRG0 241 aa11.44□□□□□ -0.58
CHFR-219ENST00000541341 SPDYE16A6NNV3 312 aaPredicted RBP11.44□□□□□ -0.58
CHFR-219ENST00000541341 LRRIQ3A6PVS8 624 aaPredicted RBP11.44□□□□□ -0.58
CHFR-219ENST00000541341 VGLL3A8MV65 326 aa11.44□□□□□ -0.58
CHFR-219ENST00000541341 HMGB1P1B2RPK0 211 aaPredicted RBP11.44□□□□□ -0.58
CHFR-219ENST00000541341 H0YHG0 523 aa11.44□□□□□ -0.58
CHFR-219ENST00000541341 CES2O00748 559 aa11.44□□□□□ -0.58
CHFR-219ENST00000541341 TRIM66O15016 1216 aa11.44□□□□□ -0.58
CHFR-219ENST00000541341 TEX33O43247 280 aa11.44□□□□□ -0.58
CHFR-219ENST00000541341 RANBP6O60518 1105 aaKnown RBP11.44□□□□□ -0.58
CHFR-219ENST00000541341 RPN1P04843 607 aaKnown RBP11.44□□□□□ -0.58
CHFR-219ENST00000541341 COL6A1P12109 1028 aa11.44□□□□□ -0.58
CHFR-219ENST00000541341 IDEP14735 1019 aa11.44□□□□□ -0.58
CHFR-219ENST00000541341 RASA1P20936 1047 aa11.44□□□□□ -0.58
CHFR-219ENST00000541341 HNRNPH3P31942 346 aaKnown RBP11.44□□□□□ -0.58
CHFR-219ENST00000541341 PRPHP41219 470 aa11.44□□□□□ -0.58
CHFR-219ENST00000541341 PAK2Q13177 524 aa11.44□□□□□ -0.58
CHFR-219ENST00000541341 IFI16Q16666 785 aaKnown RBP11.44□□□□□ -0.58
CHFR-219ENST00000541341 KIAA1755Q5JYT7 1200 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms