RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 ZBTB39O15060 712 aa10.47□□□□□ -0.73
DDX55-208ENST00000541259 CTAGE5O15320 804 aa10.47□□□□□ -0.73
DDX55-208ENST00000541259 POLR2DO15514 142 aaKnown RBP10.47□□□□□ -0.73
DDX55-208ENST00000541259 NR1I2O75469 434 aa10.47□□□□□ -0.73
DDX55-208ENST00000541259 MYCP01106 439 aaPredicted RBP10.47□□□□□ -0.73
DDX55-208ENST00000541259 SUPT20HL2P0C7V6 817 aa10.47□□□□□ -0.73
DDX55-208ENST00000541259 RPA1P27694 616 aa10.47□□□□□ -0.73
DDX55-208ENST00000541259 SFNP31947 248 aa10.47□□□□□ -0.73
DDX55-208ENST00000541259 TCF7P36402 384 aaPredicted RBP10.47□□□□□ -0.73
DDX55-208ENST00000541259 JAK3P52333 1124 aa10.47□□□□□ -0.73
DDX55-208ENST00000541259 PSMC6P62333 389 aa10.47□□□□□ -0.73
DDX55-208ENST00000541259 BEX3Q00994 111 aa10.47□□□□□ -0.73
DDX55-208ENST00000541259 MTFR1Q15390 333 aa10.47□□□□□ -0.73
DDX55-208ENST00000541259 SLC9C1Q4G0N8 1177 aa10.47□□□□□ -0.73
DDX55-208ENST00000541259 TMEM119Q4V9L6 283 aa10.47□□□□□ -0.73
DDX55-208ENST00000541259 UTP14CQ5TAP6 766 aaKnown RBP10.47□□□□□ -0.73
DDX55-208ENST00000541259 MIS18BP1Q6P0N0 1132 aa10.47□□□□□ -0.73
DDX55-208ENST00000541259 KCNK18Q7Z418 384 aa10.47□□□□□ -0.73
DDX55-208ENST00000541259 TLK2Q86UE8 772 aa10.47□□□□□ -0.73
DDX55-208ENST00000541259 CCDC60Q8IWA6 550 aaPredicted RBP10.47□□□□□ -0.73
DDX55-208ENST00000541259 TPH2Q8IWU9 490 aa10.47□□□□□ -0.73
DDX55-208ENST00000541259 SMAP1Q8IYB5 467 aaPredicted RBP10.47□□□□□ -0.73
DDX55-208ENST00000541259 FMR1NBQ8N0W7 255 aaPredicted RBP10.47□□□□□ -0.73
DDX55-208ENST00000541259 ERMNQ8TAM6 284 aa10.47□□□□□ -0.73
DDX55-208ENST00000541259 SEPT1Q8WYJ6 367 aa10.47□□□□□ -0.73
DDX55-208ENST00000541259 EMID1Q96A84 441 aaPredicted RBP10.47□□□□□ -0.73
DDX55-208ENST00000541259 POLR3CQ9BUI4 534 aaPredicted RBP10.47□□□□□ -0.73
DDX55-208ENST00000541259 UNC93B1Q9H1C4 597 aa10.47□□□□□ -0.73
DDX55-208ENST00000541259 GABBR1Q9UBS5 961 aa10.47□□□□□ -0.73
DDX55-208ENST00000541259 TCEAL9Q9UHQ7 104 aa10.47□□□□□ -0.73
DDX55-208ENST00000541259 KIAA1024Q9UPX6 916 aa10.47□□□□□ -0.73
DDX55-208ENST00000541259 IGKV6D-21A0A0A0MT36 114 aa10.46□□□□□ -0.73
DDX55-208ENST00000541259 E9PMD0 336 aa10.46□□□□□ -0.73
DDX55-208ENST00000541259 NOP56O00567 594 aaKnown RBP10.46□□□□□ -0.73
DDX55-208ENST00000541259 ZNF862O60290 1169 aa10.46□□□□□ -0.73
DDX55-208ENST00000541259 DUSP11O75319 330 aaKnown RBP10.46□□□□□ -0.73
DDX55-208ENST00000541259 ZNF202O95125 648 aa10.46□□□□□ -0.73
DDX55-208ENST00000541259 PGK1P00558 417 aa10.46□□□□□ -0.73
DDX55-208ENST00000541259 P4HBP07237 508 aaKnown RBP10.46□□□□□ -0.73
DDX55-208ENST00000541259 PSAPP07602 524 aa10.46□□□□□ -0.73
DDX55-208ENST00000541259 MMP3P08254 477 aa10.46□□□□□ -0.73
DDX55-208ENST00000541259 PLCG1P19174 1290 aa10.46□□□□□ -0.73
DDX55-208ENST00000541259 ATP4AP20648 1035 aa10.46□□□□□ -0.73
DDX55-208ENST00000541259 SYKP43405 635 aa10.46□□□□□ -0.73
DDX55-208ENST00000541259 FAM160A1Q05DH4 1040 aa10.46□□□□□ -0.73
DDX55-208ENST00000541259 LONRF3Q496Y0 759 aa10.46□□□□□ -0.73
DDX55-208ENST00000541259 NAALADL2Q58DX5 795 aa10.46□□□□□ -0.73
DDX55-208ENST00000541259 HYIQ5T013 277 aa10.46□□□□□ -0.73
DDX55-208ENST00000541259 FBXO46Q6PJ61 603 aaPredicted RBP10.46□□□□□ -0.73
DDX55-208ENST00000541259 POTEGQ6S5H5 508 aa10.46□□□□□ -0.73
DDX55-208ENST00000541259 CCDC73Q6ZRK6 1079 aa10.46□□□□□ -0.73
DDX55-208ENST00000541259 TRMT1LQ7Z2T5 733 aaKnown RBP10.46□□□□□ -0.73
DDX55-208ENST00000541259 TRIM50Q86XT4 487 aa10.46□□□□□ -0.73
DDX55-208ENST00000541259 RDM1Q8NG50 284 aa10.46□□□□□ -0.73
DDX55-208ENST00000541259 RASSF8Q8NHQ8 419 aa10.46□□□□□ -0.73
DDX55-208ENST00000541259 PPTC7Q8NI37 304 aa10.46□□□□□ -0.73
DDX55-208ENST00000541259 DHX58Q96C10 678 aa10.46□□□□□ -0.73
DDX55-208ENST00000541259 CALML4Q96GE6 196 aa10.46□□□□□ -0.73
DDX55-208ENST00000541259 LXNQ9BS40 222 aa10.46□□□□□ -0.73
DDX55-208ENST00000541259 AP5M1Q9H0R1 490 aa10.46□□□□□ -0.73
DDX55-208ENST00000541259 HMX1Q9NP08 348 aaPredicted RBP10.46□□□□□ -0.73
DDX55-208ENST00000541259 DDX19AQ9NUU7 478 aaKnown RBP10.46□□□□□ -0.73
DDX55-208ENST00000541259 DDX20Q9UHI6 824 aaKnown RBP10.46□□□□□ -0.73
DDX55-208ENST00000541259 SERTAD1Q9UHV2 236 aa10.46□□□□□ -0.73
DDX55-208ENST00000541259 Q9Y3F1 56 aa10.46□□□□□ -0.73
DDX55-208ENST00000541259 SYNRGQ9UMZ2 1314 aa10.46□□□□□ -0.73
DDX55-208ENST00000541259 TMEM150BA6NC51 233 aa10.45□□□□□ -0.74
DDX55-208ENST00000541259 A6NJR5 290 aa10.45□□□□□ -0.74
DDX55-208ENST00000541259 BACH1O14867 736 aa10.45□□□□□ -0.74
DDX55-208ENST00000541259 LGR5O75473 907 aa10.45□□□□□ -0.74
DDX55-208ENST00000541259 STBD1O95210 358 aa10.45□□□□□ -0.74
DDX55-208ENST00000541259 LGALS2P05162 132 aa10.45□□□□□ -0.74
DDX55-208ENST00000541259 ZNF286BP0CG31 522 aa10.45□□□□□ -0.74
DDX55-208ENST00000541259 RARBP10826 455 aa10.45□□□□□ -0.74
DDX55-208ENST00000541259 TXLNAP40222 546 aa10.45□□□□□ -0.74
DDX55-208ENST00000541259 QARSP47897 775 aaKnown RBP10.45□□□□□ -0.74
DDX55-208ENST00000541259 STAT5BP51692 787 aa10.45□□□□□ -0.74
DDX55-208ENST00000541259 GJA9P57773 515 aa10.45□□□□□ -0.74
DDX55-208ENST00000541259 RRAGBQ5VZM2 374 aa10.45□□□□□ -0.74
DDX55-208ENST00000541259 HAUS3Q68CZ6 603 aa10.45□□□□□ -0.74
DDX55-208ENST00000541259 GPR153Q6NV75 609 aa10.45□□□□□ -0.74
DDX55-208ENST00000541259 PDXDC2PQ6P474 469 aa10.45□□□□□ -0.74
DDX55-208ENST00000541259 GPIHBP1Q8IV16 184 aa10.45□□□□□ -0.74
DDX55-208ENST00000541259 GRAMD1CQ8IYS0 662 aa10.45□□□□□ -0.74
DDX55-208ENST00000541259 PIGOQ8TEQ8 1089 aa10.45□□□□□ -0.74
DDX55-208ENST00000541259 STAMQ92783 540 aa10.45□□□□□ -0.74
DDX55-208ENST00000541259 KHSRPQ92945 711 aaKnown RBP eCLIP10.45□□□□□ -0.74
DDX55-208ENST00000541259 CDK5RAP3Q96JB5 506 aa10.45□□□□□ -0.74
DDX55-208ENST00000541259 EPAS1Q99814 870 aa10.45□□□□□ -0.74
DDX55-208ENST00000541259 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.45□□□□□ -0.74
DDX55-208ENST00000541259 UPF3AQ9H1J1 476 aaKnown RBP10.45□□□□□ -0.74
DDX55-208ENST00000541259 TUFT1Q9NNX1 390 aa10.45□□□□□ -0.74
DDX55-208ENST00000541259 ZNF302Q9NR11 478 aa10.45□□□□□ -0.74
DDX55-208ENST00000541259 BLOC1S4Q9NUP1 217 aa10.45□□□□□ -0.74
DDX55-208ENST00000541259 DACT1Q9NYF0 836 aa10.45□□□□□ -0.74
DDX55-208ENST00000541259 CCDC39Q9UFE4 941 aa10.45□□□□□ -0.74
DDX55-208ENST00000541259 MAFBQ9Y5Q3 323 aaPredicted RBP10.45□□□□□ -0.74
DDX55-208ENST00000541259 KIAA0100Q14667 2235 aaKnown RBP10.45□□□□□ -0.74
DDX55-208ENST00000541259 SCN10AQ9Y5Y9 1956 aa10.45□□□□□ -0.74
DDX55-208ENST00000541259 BRCA2P51587 3418 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms