RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 SPATA24Q86W54 205 aa10.27□□□□□ -0.77
CLIP1-214ENST00000540539 NELFBQ8WX92 580 aa10.27□□□□□ -0.77
CLIP1-214ENST00000540539 ATP6V0A1Q93050 837 aa10.27□□□□□ -0.77
CLIP1-214ENST00000540539 NEK1Q96PY6 1258 aa10.27□□□□□ -0.77
CLIP1-214ENST00000540539 NUDCD1Q96RS6 583 aa10.27□□□□□ -0.77
CLIP1-214ENST00000540539 EIF2AQ9BY44 585 aaKnown RBP10.27□□□□□ -0.77
CLIP1-214ENST00000540539 EPB41L5Q9HCM4 733 aa10.27□□□□□ -0.77
CLIP1-214ENST00000540539 RBM12Q9NTZ6 932 aaKnown RBP10.27□□□□□ -0.77
CLIP1-214ENST00000540539 PAG1Q9NWQ8 432 aa10.27□□□□□ -0.77
CLIP1-214ENST00000540539 MKS1Q9NXB0 559 aa10.27□□□□□ -0.77
CLIP1-214ENST00000540539 TMOD3Q9NYL9 352 aa10.27□□□□□ -0.77
CLIP1-214ENST00000540539 MAN1B1Q9UKM7 699 aa10.27□□□□□ -0.77
CLIP1-214ENST00000540539 TDRKHQ9Y2W6 561 aaKnown RBP10.27□□□□□ -0.77
CLIP1-214ENST00000540539 RCCD1A6NED2 376 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 FOXN1O15353 648 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 KCNQ3O43525 872 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 ASMTLO95671 621 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 CHGBP05060 677 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 SERPINB3P29508 390 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 HSD17B3P37058 310 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 CCT8P50990 548 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 RTP1P59025 263 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 INAQ16352 499 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 ZC3H18Q86VM9 953 aaKnown RBP10.26□□□□□ -0.77
CLIP1-214ENST00000540539 PIGOQ8TEQ8 1089 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 ZC3H15Q8WU90 426 aaKnown RBP10.26□□□□□ -0.77
CLIP1-214ENST00000540539 DNAJC1Q96KC8 554 aaKnown RBP10.26□□□□□ -0.77
CLIP1-214ENST00000540539 HNRNPABQ99729 332 aaKnown RBP10.26□□□□□ -0.77
CLIP1-214ENST00000540539 LACRTQ9GZZ8 138 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 MTFR1LQ9H019 292 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 TUT1Q9H6E5 874 aaKnown RBP10.26□□□□□ -0.77
CLIP1-214ENST00000540539 EP400Q96L91 3159 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 A6NJR5 290 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 H0Y3Z8 333 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 HEXIM1O94992 359 aaKnown RBP10.26□□□□□ -0.77
CLIP1-214ENST00000540539 POLR3DP05423 398 aaPredicted RBP10.26□□□□□ -0.77
CLIP1-214ENST00000540539 SCG2P13521 617 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 MARCKSP29966 332 aaPredicted RBP10.26□□□□□ -0.77
CLIP1-214ENST00000540539 CCT4P50991 539 aaKnown RBP10.26□□□□□ -0.77
CLIP1-214ENST00000540539 PDE1BQ01064 536 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 SLC39A6Q13433 755 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 UAP1Q16222 522 aaPredicted RBP10.26□□□□□ -0.77
CLIP1-214ENST00000540539 AGBL2Q5U5Z8 902 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 TREML1Q86YW5 311 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 ZNF713Q8N859 430 aaPredicted RBP10.26□□□□□ -0.77
CLIP1-214ENST00000540539 SYT2Q8N9I0 419 aaPredicted RBP10.26□□□□□ -0.77
CLIP1-214ENST00000540539 KRI1Q8N9T8 703 aaKnown RBP10.26□□□□□ -0.77
CLIP1-214ENST00000540539 IRGQQ8WZA9 623 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 CENPTQ96BT3 561 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 FAM227BQ96M60 508 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 TUBGCP5Q96RT8 1024 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 DDX50Q9BQ39 737 aaKnown RBP10.26□□□□□ -0.77
CLIP1-214ENST00000540539 NACAP1Q9BZK3 213 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 SYNCQ9H7C4 482 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 MYH1P12882 1939 aa10.26□□□□□ -0.77
CLIP1-214ENST00000540539 SART1O43290 800 aaKnown RBP10.25□□□□□ -0.77
CLIP1-214ENST00000540539 COL6A2P12110 1019 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 SKIP12755 728 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 VAV1P15498 845 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 TRADDQ15628 312 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 C6orf183Q5T699 404 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 ZNF790Q6PG37 636 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 KRT27Q7Z3Y8 459 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 NAT14Q8WUY8 206 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 CASKIN2Q8WXE0 1202 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 PIGBQ92521 554 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 DDX12PQ92771 950 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 NUP88Q99567 741 aaPredicted RBP10.25□□□□□ -0.77
CLIP1-214ENST00000540539 ATAD3AQ9NVI7 634 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 RASAL2Q9UJF2 1139 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 UNCXA6NJT0 531 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 KRT86O43790 486 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 SERPINB7O75635 380 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 UBTFL6P0CB48 400 aaPredicted RBP10.25□□□□□ -0.77
CLIP1-214ENST00000540539 PLCG2P16885 1265 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 RASA1P20936 1047 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 EAPPQ56P03 285 aaPredicted RBP10.25□□□□□ -0.77
CLIP1-214ENST00000540539 SHC4Q6S5L8 630 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 IQCDQ96DY2 449 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 MPP4Q96JB8 637 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 CENPKQ9BS16 269 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 NRDE2Q9H7Z3 1164 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 CNOT10Q9H9A5 744 aaKnown RBP10.25□□□□□ -0.77
CLIP1-214ENST00000540539 EXOC1Q9NV70 894 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 FAM32AQ9Y421 112 aaKnown RBP10.25□□□□□ -0.77
CLIP1-214ENST00000540539 DUSP10Q9Y6W6 482 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 MROH7Q68CQ1 1323 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 SALL1Q9NSC2 1324 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 MYH7BA7E2Y1 1941 aa10.25□□□□□ -0.77
CLIP1-214ENST00000540539 MACROD2A1Z1Q3 448 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 HSPA8P11142 646 aaKnown RBP10.24□□□□□ -0.77
CLIP1-214ENST00000540539 CCT6AP40227 531 aaKnown RBP10.24□□□□□ -0.77
CLIP1-214ENST00000540539 EMP3P54852 163 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 EIF4A1P60842 406 aaKnown RBP10.24□□□□□ -0.77
CLIP1-214ENST00000540539 C3orf62Q6ZUJ4 267 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 RIBC1Q8N443 379 aaPredicted RBP10.24□□□□□ -0.77
CLIP1-214ENST00000540539 GDAP1Q8TB36 358 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 RBM46Q8TBY0 533 aaKnown RBP10.24□□□□□ -0.77
CLIP1-214ENST00000540539 RHPN1Q8TCX5 695 aa10.24□□□□□ -0.77
CLIP1-214ENST00000540539 ATXN2LQ8WWM7 1075 aaKnown RBP10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms