RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 FAM86B1E9PN63 330 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 WDR46O15213 610 aaKnown RBP11.78□□□□□ -0.52
CLIP1-213ENST00000540338 ZBTB7AO95365 584 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 FAM86B2P0C5J1 330 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 MYBP10242 640 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 CXCR5P32302 372 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 GIT2Q14161 759 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 SHROOM1Q2M3G4 852 aaPredicted RBP11.78□□□□□ -0.52
CLIP1-213ENST00000540338 SPDYE2Q495Y8 402 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 TBC1D10BQ4KMP7 808 aaPredicted RBP11.78□□□□□ -0.52
CLIP1-213ENST00000540338 SCFD1Q8WVM8 642 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 DNAJC18Q9H819 358 aa11.78□□□□□ -0.52
CLIP1-213ENST00000540338 NMT1P30419 496 aaKnown RBP11.77□□□□□ -0.52
CLIP1-213ENST00000540338 ALCAMQ13740 583 aa11.77□□□□□ -0.52
CLIP1-213ENST00000540338 RMDN3Q96TC7 470 aa11.77□□□□□ -0.52
CLIP1-213ENST00000540338 RNF14Q9UBS8 474 aa11.77□□□□□ -0.52
CLIP1-213ENST00000540338 CCDC88AQ3V6T2 1871 aa11.77□□□□□ -0.53
CLIP1-213ENST00000540338 KCNK3O14649 394 aa11.77□□□□□ -0.53
CLIP1-213ENST00000540338 SPP2Q13103 211 aa11.77□□□□□ -0.53
CLIP1-213ENST00000540338 ARHGAP27Q6ZUM4 889 aa11.77□□□□□ -0.53
CLIP1-213ENST00000540338 SH3BP5LQ7L8J4 393 aa11.77□□□□□ -0.53
CLIP1-213ENST00000540338 FAM83AQ86UY5 434 aa11.77□□□□□ -0.53
CLIP1-213ENST00000540338 SLC17A8Q8NDX2 589 aa11.77□□□□□ -0.53
CLIP1-213ENST00000540338 DNAJC19Q96DA6 116 aa11.77□□□□□ -0.53
CLIP1-213ENST00000540338 MYOZ2Q9NPC6 264 aa11.77□□□□□ -0.53
CLIP1-213ENST00000540338 TFR2Q9UP52 801 aa11.77□□□□□ -0.53
CLIP1-213ENST00000540338 TAL1P17542 331 aaPredicted RBP11.77□□□□□ -0.53
CLIP1-213ENST00000540338 CLK2P49760 499 aaKnown RBP11.77□□□□□ -0.53
CLIP1-213ENST00000540338 PSMC6P62333 389 aa11.77□□□□□ -0.53
CLIP1-213ENST00000540338 ALKBH5Q6P6C2 394 aaKnown RBP11.77□□□□□ -0.53
CLIP1-213ENST00000540338 CYP2W1Q8TAV3 490 aa11.77□□□□□ -0.53
CLIP1-213ENST00000540338 GDAP1L1Q96MZ0 367 aa11.77□□□□□ -0.53
CLIP1-213ENST00000540338 PCIF1Q9H4Z3 704 aa11.77□□□□□ -0.53
CLIP1-213ENST00000540338 CALCOCO1Q9P1Z2 691 aa11.77□□□□□ -0.53
CLIP1-213ENST00000540338 KCNG1Q9UIX4 513 aa11.77□□□□□ -0.53
CLIP1-213ENST00000540338 CHD4Q14839 1912 aa11.77□□□□□ -0.53
CLIP1-213ENST00000540338 RNF225M0QZC1 329 aaPredicted RBP11.76□□□□□ -0.53
CLIP1-213ENST00000540338 GFPT2O94808 682 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 QARSP47897 775 aaKnown RBP11.76□□□□□ -0.53
CLIP1-213ENST00000540338 NOVP48745 357 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 DMP1Q13316 513 aaPredicted RBP11.76□□□□□ -0.53
CLIP1-213ENST00000540338 MEA1Q16626 185 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 SND1Q7KZF4 910 aaKnown RBP eCLIP11.76□□□□□ -0.53
CLIP1-213ENST00000540338 MTMR8Q96EF0 704 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 PSMD1Q99460 953 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 RIT2Q99578 217 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 SLC16A3O15427 465 aaKnown RBP11.76□□□□□ -0.53
CLIP1-213ENST00000540338 PLEKP08567 350 aaPredicted RBP11.76□□□□□ -0.53
CLIP1-213ENST00000540338 VIL1P09327 827 aaKnown RBP11.76□□□□□ -0.53
CLIP1-213ENST00000540338 LMNB1P20700 586 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 HERVK_113P62684 666 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 C2orf54Q08AI8 447 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 RINT1Q6NUQ1 792 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 BTNL9Q6UXG8 535 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 ATP6V0A1Q93050 837 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 AGBL1Q96MI9 1066 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 FNBP1Q96RU3 617 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 MXRA8Q9BRK3 442 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 ODF2LQ9ULJ1 636 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 MYH6P13533 1939 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 FTCDO95954 541 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 FDX1P10109 184 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 ABCB4P21439 1286 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 CIITAP33076 1130 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 CXCL9Q07325 125 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 FKBP1CQ5VVH2 108 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 DAAM2Q86T65 1068 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 KLHL7Q8IXQ5 586 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 SYN2Q92777 582 aaPredicted RBP11.76□□□□□ -0.53
CLIP1-213ENST00000540338 TRERF1Q96PN7 1200 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 PDE11AQ9HCR9 933 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 KCND2Q9NZV8 630 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 DOCK2Q92608 1830 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 A0A1W2PRG0 241 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 TMEM110-MUSTN1A8MSY1 372 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 ZMYND10O75800 440 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 CCND2P30279 289 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 SSR1P43307 286 aaKnown RBP11.76□□□□□ -0.53
CLIP1-213ENST00000540338 SCN7AQ01118 1682 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 MIIPQ5JXC2 388 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 MAATS1Q7Z4T9 603 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 GLIS3Q8NEA6 775 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 KIFAP3Q92845 792 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 TCHPQ9BT92 498 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 RUSC1Q9BVN2 902 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 LACRTQ9GZZ8 138 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 CTTNBP2NLQ9P2B4 639 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 AMFRQ9UKV5 643 aa11.76□□□□□ -0.53
CLIP1-213ENST00000540338 CYP3A4P08684 503 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 CAPN2P17655 700 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 JAK3P52333 1124 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 STRN3Q13033 797 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 ECM1Q16610 540 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 HYIQ5T013 277 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 CCDC26Q8TAB7 109 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 VTI1AQ96AJ9 217 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 PLVAPQ9BX97 442 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 SCAF8Q9UPN6 1271 aaKnown RBP11.75□□□□□ -0.53
CLIP1-213ENST00000540338 RSPH10B2B2RC85 870 aa11.75□□□□□ -0.53
CLIP1-213ENST00000540338 RSPH10BP0C881 870 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms