RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 PPP2R5CQ13362 524 aa11.87□□□□□ -0.51
CLIP1-210ENST00000538120 B3GNT9Q6UX72 402 aa11.87□□□□□ -0.51
CLIP1-210ENST00000538120 TTYH3Q9C0H2 523 aa11.87□□□□□ -0.51
CLIP1-210ENST00000538120 RAVER2Q9HCJ3 691 aaKnown RBP11.87□□□□□ -0.51
CLIP1-210ENST00000538120 ARFGAP3Q9NP61 516 aa11.87□□□□□ -0.51
CLIP1-210ENST00000538120 PUF60Q9UHX1 559 aaKnown RBP11.87□□□□□ -0.51
CLIP1-210ENST00000538120 ADGRG1Q9Y653 693 aa11.87□□□□□ -0.51
CLIP1-210ENST00000538120 SLITRK3O94933 977 aa11.87□□□□□ -0.51
CLIP1-210ENST00000538120 KRT9P35527 623 aa11.87□□□□□ -0.51
CLIP1-210ENST00000538120 HERC4Q5GLZ8 1057 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-210ENST00000538120 MUM1L1Q5H9M0 696 aa11.87□□□□□ -0.51
CLIP1-210ENST00000538120 SCFD1Q8WVM8 642 aa11.87□□□□□ -0.51
CLIP1-210ENST00000538120 ZKSCAN4Q969J2 545 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-210ENST00000538120 NOC4LQ9BVI4 516 aaKnown RBP11.87□□□□□ -0.51
CLIP1-210ENST00000538120 BCAS3Q9H6U6 928 aa11.87□□□□□ -0.51
CLIP1-210ENST00000538120 PPP1R9AQ9ULJ8 1098 aa11.87□□□□□ -0.51
CLIP1-210ENST00000538120 CAPN11Q9UMQ6 739 aa11.87□□□□□ -0.51
CLIP1-210ENST00000538120 PCDHGA4Q9Y5G9 962 aa11.87□□□□□ -0.51
CLIP1-210ENST00000538120 UNCXA6NJT0 531 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 PES1O00541 588 aaKnown RBP11.86□□□□□ -0.51
CLIP1-210ENST00000538120 ATP8B1O43520 1251 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 ABL1P00519 1130 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 ITGB5P18084 799 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 HIRAP54198 1017 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-210ENST00000538120 TBC1D8BQ0IIM8 1120 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 SPP2Q13103 211 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 CTTNQ14247 550 aaKnown RBP11.86□□□□□ -0.51
CLIP1-210ENST00000538120 LONRF2Q1L5Z9 754 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 LRCH2Q5VUJ6 765 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 SCYL3Q8IZE3 742 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 CPXCR1Q8N123 301 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 IL31RAQ8NI17 732 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 RABGGTAQ92696 567 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 DYDC2Q96IM9 177 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 REEP2Q9BRK0 252 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 MXRA8Q9BRK3 442 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 TANGO6Q9C0B7 1094 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 KCTD10Q9H3F6 313 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 RPAP3Q9H6T3 665 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-210ENST00000538120 EHMT1Q9H9B1 1298 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 GOLGA6L9A6NEM1 432 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 EYA4O95677 639 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 PTPRAP18433 802 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 CASP5P51878 434 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 VWA3BQ502W6 1294 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 DCAF15Q66K64 600 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 TMTC1Q8IUR5 882 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 GOLGA1Q92805 767 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 WNK4Q96J92 1243 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 ERGIC2Q96RQ1 377 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 DNAJC7Q99615 494 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 RUSC1Q9BVN2 902 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 UNC45AQ9H3U1 944 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 SUGCTQ9HAC7 445 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 TUFT1Q9NNX1 390 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 GPRC5DQ9NZD1 345 aa11.86□□□□□ -0.51
CLIP1-210ENST00000538120 CHMP2AO43633 222 aa11.85□□□□□ -0.51
CLIP1-210ENST00000538120 FLOT1O75955 427 aa11.85□□□□□ -0.51
CLIP1-210ENST00000538120 ALAS1P13196 640 aa11.85□□□□□ -0.51
CLIP1-210ENST00000538120 BACE1P56817 501 aa11.85□□□□□ -0.51
CLIP1-210ENST00000538120 GPR153Q6NV75 609 aa11.85□□□□□ -0.51
CLIP1-210ENST00000538120 WDR59Q6PJI9 974 aa11.85□□□□□ -0.51
CLIP1-210ENST00000538120 NELFCDQ8IXH7 590 aa11.85□□□□□ -0.51
CLIP1-210ENST00000538120 SYTL5Q8TDW5 730 aaPredicted RBP11.85□□□□□ -0.51
CLIP1-210ENST00000538120 CHP1Q99653 195 aa11.85□□□□□ -0.51
CLIP1-210ENST00000538120 ZNF577Q9BSK1 485 aa11.85□□□□□ -0.51
CLIP1-210ENST00000538120 BHMT2Q9H2M3 363 aa11.85□□□□□ -0.51
CLIP1-210ENST00000538120 ANKZF1Q9H8Y5 726 aa11.85□□□□□ -0.51
CLIP1-210ENST00000538120 WRAP73Q9P2S5 460 aaPredicted RBP11.85□□□□□ -0.51
CLIP1-210ENST00000538120 RSPH10B2B2RC85 870 aa11.85□□□□□ -0.51
CLIP1-210ENST00000538120 ZBTB39O15060 712 aa11.85□□□□□ -0.51
CLIP1-210ENST00000538120 KRT18P05783 430 aaKnown RBP11.85□□□□□ -0.51
CLIP1-210ENST00000538120 RSPH10BP0C881 870 aa11.85□□□□□ -0.51
CLIP1-210ENST00000538120 HOXD13P35453 343 aa11.85□□□□□ -0.51
CLIP1-210ENST00000538120 EPM2AIP1Q7L775 607 aaPredicted RBP11.85□□□□□ -0.51
CLIP1-210ENST00000538120 APOBEC3FQ8IUX4 373 aaKnown RBP11.85□□□□□ -0.51
CLIP1-210ENST00000538120 ZC3H3Q8IXZ2 948 aaKnown RBP11.85□□□□□ -0.51
CLIP1-210ENST00000538120 OR8K1Q8NGG5 319 aa11.85□□□□□ -0.51
CLIP1-210ENST00000538120 KHSRPQ92945 711 aaKnown RBP eCLIP11.85□□□□□ -0.51
CLIP1-210ENST00000538120 WRNIP1Q96S55 665 aa11.85□□□□□ -0.51
CLIP1-210ENST00000538120 PNKPQ96T60 521 aa11.85□□□□□ -0.51
CLIP1-210ENST00000538120 TSG101Q99816 390 aa11.85□□□□□ -0.51
CLIP1-210ENST00000538120 AGPAT5Q9NUQ2 364 aa11.85□□□□□ -0.51
CLIP1-210ENST00000538120 SIK3Q9Y2K2 1263 aa11.85□□□□□ -0.51
CLIP1-210ENST00000538120 SSC5DA1L4H1 1573 aa11.84□□□□□ -0.51
CLIP1-210ENST00000538120 GAS7O60861 476 aa11.84□□□□□ -0.51
CLIP1-210ENST00000538120 FGFR1OPO95684 399 aaKnown RBP11.84□□□□□ -0.51
CLIP1-210ENST00000538120 CCDC175P0C221 793 aa11.84□□□□□ -0.51
CLIP1-210ENST00000538120 EPS15P42566 896 aa11.84□□□□□ -0.51
CLIP1-210ENST00000538120 USP14P54578 494 aa11.84□□□□□ -0.51
CLIP1-210ENST00000538120 CHMP4BP1P59074 171 aa11.84□□□□□ -0.51
CLIP1-210ENST00000538120 MRPS9P82933 396 aaKnown RBP11.84□□□□□ -0.51
CLIP1-210ENST00000538120 MAN2A1Q16706 1144 aa11.84□□□□□ -0.51
CLIP1-210ENST00000538120 RINT1Q6NUQ1 792 aa11.84□□□□□ -0.51
CLIP1-210ENST00000538120 CYP26C1Q6V0L0 522 aa11.84□□□□□ -0.51
CLIP1-210ENST00000538120 SFR1Q86XK3 245 aa11.84□□□□□ -0.51
CLIP1-210ENST00000538120 MCF2L2Q86YR7 1114 aa11.84□□□□□ -0.51
CLIP1-210ENST00000538120 ZNF280CQ8ND82 737 aa11.84□□□□□ -0.51
CLIP1-210ENST00000538120 PIGOQ8TEQ8 1089 aa11.84□□□□□ -0.51
CLIP1-210ENST00000538120 NDST4Q9H3R1 872 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms