RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 LRCH3Q96II8 777 aa14.64□□□□□ -0.07
VPS28-216ENST00000533806 OSBPL7Q9BZF2 842 aa14.64□□□□□ -0.07
VPS28-216ENST00000533806 CXXC1Q9P0U4 656 aaPredicted RBP14.64□□□□□ -0.07
VPS28-216ENST00000533806 TRPC6Q9Y210 931 aa14.64□□□□□ -0.07
VPS28-216ENST00000533806 CHD9Q3L8U1 2897 aa14.64□□□□□ -0.07
VPS28-216ENST00000533806 RSPH10B2B2RC85 870 aa14.63□□□□□ -0.07
VPS28-216ENST00000533806 RBAK-RBAKDNI3L0D1 243 aa14.63□□□□□ -0.07
VPS28-216ENST00000533806 CHMP2AO43633 222 aa14.63□□□□□ -0.07
VPS28-216ENST00000533806 RSPH10BP0C881 870 aa14.63□□□□□ -0.07
VPS28-216ENST00000533806 THPOP40225 353 aa14.63□□□□□ -0.07
VPS28-216ENST00000533806 TOB1P50616 345 aaPredicted RBP14.63□□□□□ -0.07
VPS28-216ENST00000533806 MGAT3Q09327 533 aa14.63□□□□□ -0.07
VPS28-216ENST00000533806 TCTN1Q2MV58 587 aa14.63□□□□□ -0.07
VPS28-216ENST00000533806 ZNF484Q5JVG2 852 aa14.63□□□□□ -0.07
VPS28-216ENST00000533806 GPR153Q6NV75 609 aa14.63□□□□□ -0.07
VPS28-216ENST00000533806 MTHFD1LQ6UB35 978 aa14.63□□□□□ -0.07
VPS28-216ENST00000533806 MIER3Q7Z3K6 550 aa14.63□□□□□ -0.07
VPS28-216ENST00000533806 DEFB128Q7Z7B8 93 aa14.63□□□□□ -0.07
VPS28-216ENST00000533806 SLFN12Q8IYM2 578 aa14.63□□□□□ -0.07
VPS28-216ENST00000533806 TRAPPC12Q8WVT3 735 aa14.63□□□□□ -0.07
VPS28-216ENST00000533806 RNPC3Q96LT9 517 aaKnown RBP14.63□□□□□ -0.07
VPS28-216ENST00000533806 TCEAL9Q9UHQ7 104 aa14.63□□□□□ -0.07
VPS28-216ENST00000533806 KIF3AQ9Y496 699 aa14.63□□□□□ -0.07
VPS28-216ENST00000533806 SAMM50Q9Y512 469 aa14.63□□□□□ -0.07
VPS28-216ENST00000533806 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.63□□□□□ -0.07
VPS28-216ENST00000533806 PCDHA2Q9Y5H9 948 aa14.63□□□□□ -0.07
VPS28-216ENST00000533806 COL1A2P08123 1366 aa14.62□□□□□ -0.07
VPS28-216ENST00000533806 SMIM35A0A1B0GVV1 85 aa14.62□□□□□ -0.07
VPS28-216ENST00000533806 CHRNA1P02708 482 aa14.62□□□□□ -0.07
VPS28-216ENST00000533806 KLRC1P26715 233 aa14.62□□□□□ -0.07
VPS28-216ENST00000533806 TRAPPC10P48553 1259 aa14.62□□□□□ -0.07
VPS28-216ENST00000533806 IGBP1P78318 339 aa14.62□□□□□ -0.07
VPS28-216ENST00000533806 SMAD3P84022 425 aaKnown RBP14.62□□□□□ -0.07
VPS28-216ENST00000533806 ORC2Q13416 577 aaPredicted RBP14.62□□□□□ -0.07
VPS28-216ENST00000533806 MKRN4PQ13434 485 aaPredicted RBP14.62□□□□□ -0.07
VPS28-216ENST00000533806 TARBP2Q15633 366 aaKnown RBP14.62□□□□□ -0.07
VPS28-216ENST00000533806 FAM109BQ6ICB4 259 aaPredicted RBP14.62□□□□□ -0.07
VPS28-216ENST00000533806 OTOP2Q7RTS6 562 aa14.62□□□□□ -0.07
VPS28-216ENST00000533806 C4orf32Q8N8J7 132 aa14.62□□□□□ -0.07
VPS28-216ENST00000533806 SNX21Q969T3 373 aa14.62□□□□□ -0.07
VPS28-216ENST00000533806 CEP89Q96ST8 783 aa14.62□□□□□ -0.07
VPS28-216ENST00000533806 TMEM60Q9H2L4 133 aa14.62□□□□□ -0.07
VPS28-216ENST00000533806 SMC3Q9UQE7 1217 aa14.62□□□□□ -0.07
VPS28-216ENST00000533806 NEMFO60524 1076 aa14.61□□□□□ -0.07
VPS28-216ENST00000533806 C22orf31O95567 290 aa14.61□□□□□ -0.07
VPS28-216ENST00000533806 OATP04181 439 aa14.61□□□□□ -0.07
VPS28-216ENST00000533806 PRKCEQ02156 737 aa14.61□□□□□ -0.07
VPS28-216ENST00000533806 CALCRLQ16602 461 aa14.61□□□□□ -0.07
VPS28-216ENST00000533806 KIAA0319LQ8IZA0 1049 aa14.61□□□□□ -0.07
VPS28-216ENST00000533806 LINC01465Q8N7H1 131 aa14.61□□□□□ -0.07
VPS28-216ENST00000533806 DNAJB3Q8WWF6 145 aa14.61□□□□□ -0.07
VPS28-216ENST00000533806 INTS4Q96HW7 963 aaKnown RBP14.61□□□□□ -0.07
VPS28-216ENST00000533806 FAM167AQ96KS9 214 aa14.61□□□□□ -0.07
VPS28-216ENST00000533806 NIFKQ9BYG3 293 aaKnown RBP14.61□□□□□ -0.07
VPS28-216ENST00000533806 WRAP73Q9P2S5 460 aaPredicted RBP14.61□□□□□ -0.07
VPS28-216ENST00000533806 TRIP12Q14669 1992 aaPredicted RBP14.61□□□□□ -0.07
VPS28-216ENST00000533806 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.6□□□□□ -0.07
VPS28-216ENST00000533806 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.6□□□□□ -0.07
VPS28-216ENST00000533806 BAG4O95429 457 aaKnown RBP14.6□□□□□ -0.07
VPS28-216ENST00000533806 RPLP2P05387 115 aaKnown RBP14.6□□□□□ -0.07
VPS28-216ENST00000533806 MCM7P33993 719 aa14.6□□□□□ -0.07
VPS28-216ENST00000533806 EPHA7Q15375 998 aa14.6□□□□□ -0.07
VPS28-216ENST00000533806 PLEKHG4Q58EX7 1191 aa14.6□□□□□ -0.07
VPS28-216ENST00000533806 CNKSR3Q6P9H4 555 aa14.6□□□□□ -0.07
VPS28-216ENST00000533806 CKAP2LQ8IYA6 745 aa14.6□□□□□ -0.07
VPS28-216ENST00000533806 HSD17B14Q9BPX1 270 aa14.6□□□□□ -0.07
VPS28-216ENST00000533806 TTC12Q9H892 705 aaPredicted RBP14.6□□□□□ -0.07
VPS28-216ENST00000533806 NRBP2Q9NSY0 501 aa14.6□□□□□ -0.07
VPS28-216ENST00000533806 PCDHA12Q9UN75 941 aa14.6□□□□□ -0.07
VPS28-216ENST00000533806 TANC1Q9C0D5 1861 aa14.6□□□□□ -0.07
VPS28-216ENST00000533806 K7ELQ4 463 aaPredicted RBP14.59□□□□□ -0.07
VPS28-216ENST00000533806 BAIAP3O94812 1187 aa14.59□□□□□ -0.07
VPS28-216ENST00000533806 P4HBP07237 508 aaKnown RBP14.59□□□□□ -0.07
VPS28-216ENST00000533806 CTSHP09668 335 aa14.59□□□□□ -0.07
VPS28-216ENST00000533806 QARSP47897 775 aaKnown RBP14.59□□□□□ -0.07
VPS28-216ENST00000533806 PSMC5P62195 406 aa14.59□□□□□ -0.07
VPS28-216ENST00000533806 ZNF174Q15697 407 aa14.59□□□□□ -0.07
VPS28-216ENST00000533806 XKR3Q5GH77 459 aa14.59□□□□□ -0.07
VPS28-216ENST00000533806 TTC38Q5R3I4 469 aa14.59□□□□□ -0.07
VPS28-216ENST00000533806 LARP1BQ659C4 914 aaKnown RBP14.59□□□□□ -0.07
VPS28-216ENST00000533806 ANO5Q75V66 913 aa14.59□□□□□ -0.07
VPS28-216ENST00000533806 NME8Q8N427 588 aa14.59□□□□□ -0.07
VPS28-216ENST00000533806 BANK1Q8NDB2 785 aa14.59□□□□□ -0.07
VPS28-216ENST00000533806 FTOQ9C0B1 505 aaKnown RBP eCLIP14.59□□□□□ -0.071e-6■■□□□ 11.8
VPS28-216ENST00000533806 KDM3AQ9Y4C1 1321 aa14.59□□□□□ -0.07
VPS28-216ENST00000533806 TET1Q8NFU7 2136 aa14.59□□□□□ -0.07
VPS28-216ENST00000533806 SCN5AQ14524 2016 aa14.58□□□□□ -0.08
VPS28-216ENST00000533806 IGKV6-21A0A0C4DH24 114 aa14.58□□□□□ -0.08
VPS28-216ENST00000533806 MAGEB2O15479 319 aa14.58□□□□□ -0.08
VPS28-216ENST00000533806 SLITRK3O94933 977 aa14.58□□□□□ -0.08
VPS28-216ENST00000533806 ATP2B1P20020 1258 aa14.58□□□□□ -0.08
VPS28-216ENST00000533806 TXKP42681 527 aa14.58□□□□□ -0.08
VPS28-216ENST00000533806 MRPS6P82932 125 aaKnown RBP14.58□□□□□ -0.08
VPS28-216ENST00000533806 NBR1Q14596 966 aa14.58□□□□□ -0.08
VPS28-216ENST00000533806 RSPH3Q86UC2 560 aa14.58□□□□□ -0.08
VPS28-216ENST00000533806 C4orf19Q8IY42 314 aa14.58□□□□□ -0.08
VPS28-216ENST00000533806 DBF4BQ8NFT6 615 aa14.58□□□□□ -0.08
VPS28-216ENST00000533806 FAM49AQ9H0Q0 323 aaPredicted RBP14.58□□□□□ -0.08
VPS28-216ENST00000533806 MTIF3Q9H2K0 278 aaKnown RBP14.58□□□□□ -0.08
VPS28-216ENST00000533806 RGL1Q9NZL6 768 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms