RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 OSBPL7Q9BZF2 842 aa15.08■□□□□ 0
VPS28-211ENST00000530790 SAMM50Q9Y512 469 aa15.08■□□□□ 0
VPS28-211ENST00000530790 PCDHA2Q9Y5H9 948 aa15.08■□□□□ 0
VPS28-211ENST00000530790 CDY2AQ9Y6F7 541 aa15.08■□□□□ 0
VPS28-211ENST00000530790 COL1A2P08123 1366 aa15.08■□□□□ 0
VPS28-211ENST00000530790 A0A0C4DFX4 3053 aa15.08■□□□□ 0
VPS28-211ENST00000530790 MICAL3Q7RTP6 2002 aa15.07■□□□□ 0
VPS28-211ENST00000530790 WDR64B1ANS9 1081 aa15.07■□□□□ 0
VPS28-211ENST00000530790 DLL1O00548 723 aa15.07■□□□□ 0
VPS28-211ENST00000530790 GTPBP6O43824 516 aaPredicted RBP15.07■□□□□ 0
VPS28-211ENST00000530790 HBP1O60381 514 aa15.07■□□□□ 0
VPS28-211ENST00000530790 LPIN1Q14693 890 aa15.07■□□□□ 0
VPS28-211ENST00000530790 SWSAP1Q6NVH7 229 aa15.07■□□□□ 0
VPS28-211ENST00000530790 TSHZ1Q6ZSZ6 1077 aa15.07■□□□□ 0
VPS28-211ENST00000530790 KRT25Q7Z3Z0 450 aa15.07■□□□□ 0
VPS28-211ENST00000530790 MICALL1Q8N3F8 863 aa15.07■□□□□ 0
VPS28-211ENST00000530790 IL17RAQ96F46 866 aa15.07■□□□□ 0
VPS28-211ENST00000530790 INSL6Q9Y581 213 aa15.07■□□□□ 0
VPS28-211ENST00000530790 PCDHA10Q9Y5I2 948 aa15.07■□□□□ 0
VPS28-211ENST00000530790 TRPV2Q9Y5S1 764 aa15.07■□□□□ 0
VPS28-211ENST00000530790 COL4A4P53420 1690 aaPredicted RBP15.06■□□□□ 0
VPS28-211ENST00000530790 SIP14410 1827 aa15.06■□□□□ 0
VPS28-211ENST00000530790 SMIM35A0A1B0GVV1 85 aa15.06■□□□□ 0
VPS28-211ENST00000530790 LINC01553A4QN01 128 aa15.06■□□□□ 0
VPS28-211ENST00000530790 EPOPA6NHQ4 379 aa15.06■□□□□ 0
VPS28-211ENST00000530790 M0R2N6 131 aa15.06■□□□□ 0
VPS28-211ENST00000530790 MSH4O15457 936 aa15.06■□□□□ 0
VPS28-211ENST00000530790 GAS7O60861 476 aa15.06■□□□□ 0
VPS28-211ENST00000530790 NONOQ15233 471 aaKnown RBP eCLIP15.06■□□□□ 0
VPS28-211ENST00000530790 NPY5RQ15761 445 aa15.06■□□□□ 0
VPS28-211ENST00000530790 CCDC85BQ15834 202 aaPredicted RBP15.06■□□□□ 0
VPS28-211ENST00000530790 ZNF484Q5JVG2 852 aa15.06■□□□□ 0
VPS28-211ENST00000530790 FBXO47Q5MNV8 452 aa15.06■□□□□ 0
VPS28-211ENST00000530790 LRCH2Q5VUJ6 765 aa15.06■□□□□ 0
VPS28-211ENST00000530790 MTHFD1LQ6UB35 978 aa15.06■□□□□ 0
VPS28-211ENST00000530790 BBXQ8WY36 941 aaPredicted RBP15.06■□□□□ 0
VPS28-211ENST00000530790 TGS1Q96RS0 853 aaKnown RBP15.06■□□□□ 0
VPS28-211ENST00000530790 YME1L1Q96TA2 773 aa15.06■□□□□ 0
VPS28-211ENST00000530790 RIT2Q99578 217 aa15.06■□□□□ 0
VPS28-211ENST00000530790 TEKT3Q9BXF9 490 aa15.06■□□□□ 0
VPS28-211ENST00000530790 MAFBQ9Y5Q3 323 aaPredicted RBP15.06■□□□□ 0
VPS28-211ENST00000530790 IGSF9BQ9UPX0 1349 aa15.06■□□□□ 0
VPS28-211ENST00000530790 CCDC194A0A1B0GVG4 234 aa15.05■□□□□ -0
VPS28-211ENST00000530790 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.05■□□□□ -0
VPS28-211ENST00000530790 RFXAPO00287 272 aa15.05■□□□□ -0
VPS28-211ENST00000530790 CHMP2AO43633 222 aa15.05■□□□□ -0
VPS28-211ENST00000530790 TDP2O95551 362 aa15.05■□□□□ -0
VPS28-211ENST00000530790 SFNP31947 248 aa15.05■□□□□ -0
VPS28-211ENST00000530790 TMEM62Q0P6H9 643 aa15.05■□□□□ -0
VPS28-211ENST00000530790 Q4G0T1 1027 aa15.05■□□□□ -0
VPS28-211ENST00000530790 SPRED2Q7Z698 418 aa15.05■□□□□ -0
VPS28-211ENST00000530790 WASF1Q92558 559 aa15.05■□□□□ -0
VPS28-211ENST00000530790 SLC5A5Q92911 643 aa15.05■□□□□ -0
VPS28-211ENST00000530790 TOP1MTQ969P6 601 aa15.05■□□□□ -0
VPS28-211ENST00000530790 FAM167AQ96KS9 214 aa15.05■□□□□ -0
VPS28-211ENST00000530790 PHF20Q9BVI0 1012 aa15.05■□□□□ -0
VPS28-211ENST00000530790 DISC1Q9NRI5 854 aa15.05■□□□□ -0
VPS28-211ENST00000530790 GABBR1Q9UBS5 961 aa15.05■□□□□ -0
VPS28-211ENST00000530790 MTUS1Q9ULD2 1270 aa15.05■□□□□ -0
VPS28-211ENST00000530790 KCNJ14Q9UNX9 436 aa15.05■□□□□ -0
VPS28-211ENST00000530790 CEP131Q9UPN4 1083 aa15.05■□□□□ -0
VPS28-211ENST00000530790 SQORQ9Y6N5 450 aa15.05■□□□□ -0
VPS28-211ENST00000530790 COL4A6Q14031 1691 aa15.05■□□□□ -0
VPS28-211ENST00000530790 KAT6AQ92794 2004 aa15.05■□□□□ -0
VPS28-211ENST00000530790 TRANK1O15050 2925 aa15.05■□□□□ -0
VPS28-211ENST00000530790 EDIL3O43854 480 aa15.04■□□□□ -0
VPS28-211ENST00000530790 UPP2O95045 317 aa15.04■□□□□ -0
VPS28-211ENST00000530790 KLRC1P26715 233 aa15.04■□□□□ -0
VPS28-211ENST00000530790 NEK4P51957 841 aa15.04■□□□□ -0
VPS28-211ENST00000530790 JAK3P52333 1124 aa15.04■□□□□ -0
VPS28-211ENST00000530790 HTRA4P83105 476 aaPredicted RBP15.04■□□□□ -0
VPS28-211ENST00000530790 MOXD1Q6UVY6 613 aa15.04■□□□□ -0
VPS28-211ENST00000530790 TRMT1LQ7Z2T5 733 aaKnown RBP15.04■□□□□ -0
VPS28-211ENST00000530790 NME8Q8N427 588 aa15.04■□□□□ -0
VPS28-211ENST00000530790 SP7Q8TDD2 431 aaPredicted RBP15.04■□□□□ -0
VPS28-211ENST00000530790 GDPD5Q8WTR4 605 aa15.04■□□□□ -0
VPS28-211ENST00000530790 GTF3C6Q969F1 213 aa15.04■□□□□ -0
VPS28-211ENST00000530790 THEGQ9P2T0 379 aa15.04■□□□□ -0
VPS28-211ENST00000530790 ORC3Q9UBD5 711 aaPredicted RBP15.04■□□□□ -0
VPS28-211ENST00000530790 KDM3AQ9Y4C1 1321 aa15.03■□□□□ -0
VPS28-211ENST00000530790 CYP3A7-CYP3A51PA0A087WV96 503 aa15.03■□□□□ -0
VPS28-211ENST00000530790 ZBTB42B2RXF5 422 aa15.03■□□□□ -0
VPS28-211ENST00000530790 LARGE1O95461 756 aa15.03■□□□□ -0
VPS28-211ENST00000530790 CTDNEP1O95476 244 aa15.03■□□□□ -0
VPS28-211ENST00000530790 C22orf31O95567 290 aa15.03■□□□□ -0
VPS28-211ENST00000530790 POU3F3P20264 500 aaPredicted RBP15.03■□□□□ -0
VPS28-211ENST00000530790 ATP4AP20648 1035 aa15.03■□□□□ -0
VPS28-211ENST00000530790 CYP3A7P24462 503 aa15.03■□□□□ -0
VPS28-211ENST00000530790 CD52P31358 61 aa15.03■□□□□ -0
VPS28-211ENST00000530790 ERVK-21P61565 698 aa15.03■□□□□ -0
VPS28-211ENST00000530790 PRKCEQ02156 737 aa15.03■□□□□ -0
VPS28-211ENST00000530790 PAK2Q13177 524 aa15.03■□□□□ -0
VPS28-211ENST00000530790 GRB10Q13322 594 aa15.03■□□□□ -0
VPS28-211ENST00000530790 ME3Q16798 604 aa15.03■□□□□ -0
VPS28-211ENST00000530790 INF2Q27J81 1249 aa15.03■□□□□ -0
VPS28-211ENST00000530790 NECAB1Q8N987 351 aa15.03■□□□□ -0
VPS28-211ENST00000530790 FTHL17Q9BXU8 183 aa15.03■□□□□ -0
VPS28-211ENST00000530790 CELF4Q9BZC1 486 aaKnown RBP15.03■□□□□ -0
VPS28-211ENST00000530790 TSPYL2Q9H2G4 693 aaPredicted RBP15.03■□□□□ -0
VPS28-211ENST00000530790 UNC45AQ9H3U1 944 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms