RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 PEX10O60683 326 aa22.89■■□□□ 1.25
VPS28-209ENST00000528142 FAM13AO94988 1023 aa22.89■■□□□ 1.25
VPS28-209ENST00000528142 JAK3P52333 1124 aa22.89■■□□□ 1.25
VPS28-209ENST00000528142 KRT76Q01546 638 aa22.89■■□□□ 1.25
VPS28-209ENST00000528142 PPIL2Q13356 520 aa22.89■■□□□ 1.25
VPS28-209ENST00000528142 TTLL12Q14166 644 aaPredicted RBP22.89■■□□□ 1.25
VPS28-209ENST00000528142 SYCP1Q15431 976 aa22.89■■□□□ 1.25
VPS28-209ENST00000528142 REXO1L1PQ8IX06 675 aa22.89■■□□□ 1.25
VPS28-209ENST00000528142 SENP7Q9BQF6 1050 aa22.89■■□□□ 1.25
VPS28-209ENST00000528142 TTYH3Q9C0H2 523 aa22.89■■□□□ 1.25
VPS28-209ENST00000528142 MRPL44Q9H9J2 332 aaKnown RBP22.89■■□□□ 1.25
VPS28-209ENST00000528142 CAPN11Q9UMQ6 739 aa22.89■■□□□ 1.25
VPS28-209ENST00000528142 SAMM50Q9Y512 469 aa22.89■■□□□ 1.25
VPS28-209ENST00000528142 LOC285556D6RIA3 1793 aa22.88■■□□□ 1.25
VPS28-209ENST00000528142 ARHGEF35A5YM69 484 aa22.88■■□□□ 1.25
VPS28-209ENST00000528142 STAM2O75886 525 aa22.88■■□□□ 1.25
VPS28-209ENST00000528142 PRPF6O94906 941 aaKnown RBP22.88■■□□□ 1.25
VPS28-209ENST00000528142 SFNP31947 248 aa22.88■■□□□ 1.25
VPS28-209ENST00000528142 MARSP56192 900 aaKnown RBP22.88■■□□□ 1.25
VPS28-209ENST00000528142 FKBP15Q5T1M5 1219 aa22.88■■□□□ 1.25
VPS28-209ENST00000528142 RETREG2Q8NC44 543 aa22.88■■□□□ 1.25
VPS28-209ENST00000528142 FIZ1Q96SL8 496 aa22.88■■□□□ 1.25
VPS28-209ENST00000528142 PARVGQ9HBI0 331 aa22.88■■□□□ 1.25
VPS28-209ENST00000528142 SEL1LQ9UBV2 794 aa22.88■■□□□ 1.25
VPS28-209ENST00000528142 A0A0G2JMZ2 1700 aa22.88■■□□□ 1.25
VPS28-209ENST00000528142 SOWAHDA6NJG2 315 aa22.87■■□□□ 1.25
VPS28-209ENST00000528142 WDR64B1ANS9 1081 aa22.87■■□□□ 1.25
VPS28-209ENST00000528142 GNA14O95837 355 aa22.87■■□□□ 1.25
VPS28-209ENST00000528142 KRT9P35527 623 aa22.87■■□□□ 1.25
VPS28-209ENST00000528142 MOGSQ13724 837 aa22.87■■□□□ 1.25
VPS28-209ENST00000528142 TOGARAM2Q6ZUX3 1019 aa22.87■■□□□ 1.25
VPS28-209ENST00000528142 MYCT1Q8N699 235 aa22.87■■□□□ 1.25
VPS28-209ENST00000528142 RDM1Q8NG50 284 aa22.87■■□□□ 1.25
VPS28-209ENST00000528142 NUP58Q9BVL2 599 aa22.87■■□□□ 1.25
VPS28-209ENST00000528142 PPP2R2CQ9Y2T4 447 aa22.87■■□□□ 1.25
VPS28-209ENST00000528142 PDXKO00764 312 aa22.87■■□□□ 1.25
VPS28-209ENST00000528142 KCNA2P16389 499 aa22.87■■□□□ 1.25
VPS28-209ENST00000528142 KLK7P49862 253 aa22.87■■□□□ 1.25
VPS28-209ENST00000528142 MAPK7Q13164 816 aa22.87■■□□□ 1.25
VPS28-209ENST00000528142 MTF1Q14872 753 aa22.87■■□□□ 1.25
VPS28-209ENST00000528142 ZNF746Q6NUN9 644 aaPredicted RBP22.87■■□□□ 1.25
VPS28-209ENST00000528142 PADI6Q6TGC4 694 aa22.87■■□□□ 1.25
VPS28-209ENST00000528142 RAD9BQ6WBX8 426 aa22.87■■□□□ 1.25
VPS28-209ENST00000528142 C4orf19Q8IY42 314 aa22.87■■□□□ 1.25
VPS28-209ENST00000528142 DNERQ8NFT8 737 aa22.87■■□□□ 1.25
VPS28-209ENST00000528142 IWS1Q96ST2 819 aa22.87■■□□□ 1.25
VPS28-209ENST00000528142 ASCC2Q9H1I8 757 aaPredicted RBP22.87■■□□□ 1.25
VPS28-209ENST00000528142 FBXO40Q9UH90 709 aa22.87■■□□□ 1.25
VPS28-209ENST00000528142 AGTPBP1Q9UPW5 1226 aa22.87■■□□□ 1.25
VPS28-209ENST00000528142 EIF3DO15371 548 aaKnown RBP eCLIP22.86■■□□□ 1.25
VPS28-209ENST00000528142 ZSCAN12O43309 604 aa22.86■■□□□ 1.25
VPS28-209ENST00000528142 GCNT3O95395 438 aa22.86■■□□□ 1.25
VPS28-209ENST00000528142 RARRES1P49788 294 aa22.86■■□□□ 1.25
VPS28-209ENST00000528142 PSMC5P62195 406 aa22.86■■□□□ 1.25
VPS28-209ENST00000528142 IRX3P78415 501 aaPredicted RBP22.86■■□□□ 1.25
VPS28-209ENST00000528142 ADAM9Q13443 819 aa22.86■■□□□ 1.25
VPS28-209ENST00000528142 UGCGQ16739 394 aa22.86■■□□□ 1.25
VPS28-209ENST00000528142 FIGNQ5HY92 759 aa22.86■■□□□ 1.25
VPS28-209ENST00000528142 LDLRAD1Q5T700 205 aa22.86■■□□□ 1.25
VPS28-209ENST00000528142 ARMC9Q7Z3E5 817 aa22.86■■□□□ 1.25
VPS28-209ENST00000528142 OPTNQ96CV9 577 aa22.86■■□□□ 1.25
VPS28-209ENST00000528142 DNAJC7Q99615 494 aa22.86■■□□□ 1.25
VPS28-209ENST00000528142 SPATC1LQ9H0A9 340 aa22.86■■□□□ 1.25
VPS28-209ENST00000528142 SIK3Q9Y2K2 1263 aa22.86■■□□□ 1.25
VPS28-209ENST00000528142 LUC7L2Q9Y383 392 aaKnown RBP22.86■■□□□ 1.25
VPS28-209ENST00000528142 ASTN1O14525 1302 aa22.86■■□□□ 1.25
VPS28-209ENST00000528142 KIF2AO00139 706 aaPredicted RBP22.85■■□□□ 1.25
VPS28-209ENST00000528142 CNMDO75829 334 aa22.85■■□□□ 1.25
VPS28-209ENST00000528142 TMTC1Q8IUR5 882 aa22.85■■□□□ 1.25
VPS28-209ENST00000528142 DAW1Q8N136 415 aa22.85■■□□□ 1.25
VPS28-209ENST00000528142 CDHR1Q96JP9 859 aa22.85■■□□□ 1.25
VPS28-209ENST00000528142 MOV10L1Q9BXT6 1211 aaKnown RBP22.85■■□□□ 1.25
VPS28-209ENST00000528142 TYW1Q9NV66 732 aaKnown RBP22.85■■□□□ 1.25
VPS28-209ENST00000528142 SPATA31C2B4DYI2 1134 aa22.85■■□□□ 1.25
VPS28-209ENST00000528142 CETN3O15182 167 aa22.85■■□□□ 1.25
VPS28-209ENST00000528142 NMT1P30419 496 aaKnown RBP22.85■■□□□ 1.25
VPS28-209ENST00000528142 HERVK_113P62684 666 aa22.85■■□□□ 1.25
VPS28-209ENST00000528142 ERVK-24P63145 666 aa22.85■■□□□ 1.25
VPS28-209ENST00000528142 CNTN2Q02246 1040 aa22.85■■□□□ 1.25
VPS28-209ENST00000528142 CCDC40Q4G0X9 1142 aa22.85■■□□□ 1.25
VPS28-209ENST00000528142 ZNF720Q7Z2F6 126 aa22.85■■□□□ 1.25
VPS28-209ENST00000528142 TRIM59Q8IWR1 403 aa22.85■■□□□ 1.25
VPS28-209ENST00000528142 ANKRD35Q8N283 1001 aa22.85■■□□□ 1.25
VPS28-209ENST00000528142 OR8K1Q8NGG5 319 aa22.85■■□□□ 1.25
VPS28-209ENST00000528142 PFASO15067 1338 aa22.84■■□□□ 1.25
VPS28-209ENST00000528142 NFASCO94856 1347 aa22.84■■□□□ 1.25
VPS28-209ENST00000528142 CALUO43852 315 aaPredicted RBP22.84■■□□□ 1.25
VPS28-209ENST00000528142 HIP1RO75146 1068 aa22.84■■□□□ 1.25
VPS28-209ENST00000528142 NR2F2P24468 414 aa22.84■■□□□ 1.25
VPS28-209ENST00000528142 YWHABP31946 246 aaKnown RBP22.84■■□□□ 1.25
VPS28-209ENST00000528142 KCNA1Q09470 495 aa22.84■■□□□ 1.25
VPS28-209ENST00000528142 ZNF408Q9H9D4 720 aa22.84■■□□□ 1.25
VPS28-209ENST00000528142 TCEAL9Q9UHQ7 104 aa22.84■■□□□ 1.25
VPS28-209ENST00000528142 PAXBP1Q9Y5B6 917 aa22.84■■□□□ 1.25
VPS28-209ENST00000528142 PCDHA10Q9Y5I2 948 aa22.84■■□□□ 1.25
VPS28-209ENST00000528142 A0A1W2PQJ5 194 aa22.83■■□□□ 1.25
VPS28-209ENST00000528142 MYRIPQ8NFW9 859 aa22.83■■□□□ 1.25
VPS28-209ENST00000528142 IQCDQ96DY2 449 aa22.83■■□□□ 1.25
VPS28-209ENST00000528142 STRA6Q9BX79 667 aa22.83■■□□□ 1.25
VPS28-209ENST00000528142 AGPAT5Q9NUQ2 364 aa22.83■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms