RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 PAN2Q504Q3 1202 aaKnown RBP16.37■□□□□ 0.21
CPSF1-201ENST00000526271 SKAP1Q86WV1 359 aa16.37■□□□□ 0.21
CPSF1-201ENST00000526271 RNF135Q8IUD6 432 aa16.37■□□□□ 0.21
CPSF1-201ENST00000526271 KLHL23Q8NBE8 558 aa16.37■□□□□ 0.21
CPSF1-201ENST00000526271 GIMAP8Q8ND71 665 aaPredicted RBP16.37■□□□□ 0.21
CPSF1-201ENST00000526271 RUFY2Q8WXA3 655 aa16.37■□□□□ 0.21
CPSF1-201ENST00000526271 GLG1Q92896 1179 aa16.37■□□□□ 0.21
CPSF1-201ENST00000526271 PHOX2BQ99453 314 aa16.37■□□□□ 0.21
CPSF1-201ENST00000526271 MXRA8Q9BRK3 442 aa16.37■□□□□ 0.21
CPSF1-201ENST00000526271 MTA3Q9BTC8 594 aa16.37■□□□□ 0.21
CPSF1-201ENST00000526271 SMARCAD1Q9H4L7 1026 aa16.37■□□□□ 0.21
CPSF1-201ENST00000526271 MYO15AQ9UKN7 3530 aa16.36■□□□□ 0.21
CPSF1-201ENST00000526271 IGKV6D-21A0A0A0MT36 114 aa16.36■□□□□ 0.21
CPSF1-201ENST00000526271 ATG7O95352 703 aa16.36■□□□□ 0.21
CPSF1-201ENST00000526271 ATP4AP20648 1035 aa16.36■□□□□ 0.21
CPSF1-201ENST00000526271 LIFRP42702 1097 aa16.36■□□□□ 0.21
CPSF1-201ENST00000526271 ACTR2P61160 394 aa16.36■□□□□ 0.21
CPSF1-201ENST00000526271 HERC4Q5GLZ8 1057 aaPredicted RBP16.36■□□□□ 0.21
CPSF1-201ENST00000526271 CMTR2Q8IYT2 770 aaKnown RBP16.36■□□□□ 0.21
CPSF1-201ENST00000526271 P2RX5Q93086 422 aa16.36■□□□□ 0.21
CPSF1-201ENST00000526271 UIMC1Q96RL1 719 aa16.36■□□□□ 0.21
CPSF1-201ENST00000526271 LZTS2Q9BRK4 669 aa16.36■□□□□ 0.21
CPSF1-201ENST00000526271 PLVAPQ9BX97 442 aa16.36■□□□□ 0.21
CPSF1-201ENST00000526271 JPH1Q9HDC5 661 aaPredicted RBP16.36■□□□□ 0.21
CPSF1-201ENST00000526271 FAM217BQ9NTX9 383 aaPredicted RBP16.36■□□□□ 0.21
CPSF1-201ENST00000526271 TMEM260Q9NX78 707 aa16.36■□□□□ 0.21
CPSF1-201ENST00000526271 SLC9A2Q9UBY0 812 aa16.36■□□□□ 0.21
CPSF1-201ENST00000526271 PCDHA2Q9Y5H9 948 aa16.36■□□□□ 0.21
CPSF1-201ENST00000526271 TRPV2Q9Y5S1 764 aa16.36■□□□□ 0.21
CPSF1-201ENST00000526271 DMDP11532 3685 aa16.35■□□□□ 0.21
CPSF1-201ENST00000526271 KIF5BP33176 963 aa16.35■□□□□ 0.21
CPSF1-201ENST00000526271 IRX6P78412 446 aaPredicted RBP16.35■□□□□ 0.21
CPSF1-201ENST00000526271 NPAS4Q8IUM7 802 aa16.35■□□□□ 0.21
CPSF1-201ENST00000526271 FANCBQ8NB91 859 aa16.35■□□□□ 0.21
CPSF1-201ENST00000526271 CRYGNQ8WXF5 182 aa16.35■□□□□ 0.21
CPSF1-201ENST00000526271 CELF4Q9BZC1 486 aaKnown RBP16.35■□□□□ 0.21
CPSF1-201ENST00000526271 AGO4Q9HCK5 861 aaKnown RBP16.35■□□□□ 0.21
CPSF1-201ENST00000526271 ERVK-5Q9HDB9 667 aa16.35■□□□□ 0.21
CPSF1-201ENST00000526271 SEC63Q9UGP8 760 aaKnown RBP16.35■□□□□ 0.21
CPSF1-201ENST00000526271 CD207Q9UJ71 328 aa16.35■□□□□ 0.21
CPSF1-201ENST00000526271 BRPF3Q9ULD4 1205 aa16.35■□□□□ 0.21
CPSF1-201ENST00000526271 SQORQ9Y6N5 450 aa16.35■□□□□ 0.21
CPSF1-201ENST00000526271 KDM3AQ9Y4C1 1321 aa16.35■□□□□ 0.21
CPSF1-201ENST00000526271 MYH9P35579 1960 aaKnown RBP16.35■□□□□ 0.21
CPSF1-201ENST00000526271 DHX15O43143 795 aaKnown RBP16.34■□□□□ 0.21
CPSF1-201ENST00000526271 MCM5P33992 734 aa16.34■□□□□ 0.21
CPSF1-201ENST00000526271 MRE11P49959 708 aa16.34■□□□□ 0.21
CPSF1-201ENST00000526271 IER5LQ5T953 404 aa16.34■□□□□ 0.21
CPSF1-201ENST00000526271 CREB3L3Q68CJ9 461 aa16.34■□□□□ 0.21
CPSF1-201ENST00000526271 MTHFD1LQ6UB35 978 aa16.34■□□□□ 0.21
CPSF1-201ENST00000526271 SGMS1Q86VZ5 419 aa16.34■□□□□ 0.21
CPSF1-201ENST00000526271 SMRP1Q8NCR6 262 aa16.34■□□□□ 0.21
CPSF1-201ENST00000526271 POF1BQ8WVV4 589 aa16.34■□□□□ 0.21
CPSF1-201ENST00000526271 CDHR1Q96JP9 859 aa16.34■□□□□ 0.21
CPSF1-201ENST00000526271 TMEM87BQ96K49 555 aa16.34■□□□□ 0.21
CPSF1-201ENST00000526271 TCEANC2Q96MN5 208 aa16.34■□□□□ 0.21
CPSF1-201ENST00000526271 BARX2Q9UMQ3 279 aaPredicted RBP16.34■□□□□ 0.21
CPSF1-201ENST00000526271 NOC2LQ9Y3T9 749 aaKnown RBP16.34■□□□□ 0.21
CPSF1-201ENST00000526271 RWDD3Q9Y3V2 267 aa16.34■□□□□ 0.21
CPSF1-201ENST00000526271 NFASCO94856 1347 aa16.34■□□□□ 0.21
CPSF1-201ENST00000526271 NCK2O43639 380 aa16.33■□□□□ 0.2
CPSF1-201ENST00000526271 EDIL3O43854 480 aa16.33■□□□□ 0.2
CPSF1-201ENST00000526271 SCG2P13521 617 aa16.33■□□□□ 0.2
CPSF1-201ENST00000526271 CLK2P49760 499 aaKnown RBP16.33■□□□□ 0.2
CPSF1-201ENST00000526271 GNAQP50148 359 aa16.33■□□□□ 0.2
CPSF1-201ENST00000526271 FAM102BQ5T8I3 360 aa16.33■□□□□ 0.2
CPSF1-201ENST00000526271 CASC1Q6TDU7 716 aa16.33■□□□□ 0.2
CPSF1-201ENST00000526271 ABHD15Q6UXT9 468 aa16.33■□□□□ 0.2
CPSF1-201ENST00000526271 PLPPR4Q7Z2D5 763 aa16.33■□□□□ 0.2
CPSF1-201ENST00000526271 HEATR3Q7Z4Q2 680 aa16.33■□□□□ 0.2
CPSF1-201ENST00000526271 MICU3Q86XE3 530 aa16.33■□□□□ 0.2
CPSF1-201ENST00000526271 CCDC60Q8IWA6 550 aaPredicted RBP16.33■□□□□ 0.2
CPSF1-201ENST00000526271 KIAA0319LQ8IZA0 1049 aa16.33■□□□□ 0.2
CPSF1-201ENST00000526271 EFHBQ8N7U6 833 aa16.33■□□□□ 0.2
CPSF1-201ENST00000526271 PRSS33Q8NF86 280 aa16.33■□□□□ 0.2
CPSF1-201ENST00000526271 ESYT1Q9BSJ8 1104 aa16.33■□□□□ 0.2
CPSF1-201ENST00000526271 RNF19AQ9NV58 838 aa16.33■□□□□ 0.2
CPSF1-201ENST00000526271 IGLV3-22A0A075B6J6 115 aa16.32■□□□□ 0.2
CPSF1-201ENST00000526271 SMIM35A0A1B0GVV1 85 aa16.32■□□□□ 0.2
CPSF1-201ENST00000526271 CCDC69A6NI79 296 aa16.32■□□□□ 0.2
CPSF1-201ENST00000526271 RRN3P2A6NIE6 340 aa16.32■□□□□ 0.2
CPSF1-201ENST00000526271 LOC730098B7Z3J9 87 aa16.32■□□□□ 0.2
CPSF1-201ENST00000526271 FAM86B1E9PN63 330 aa16.32■□□□□ 0.2
CPSF1-201ENST00000526271 STXBP3O00186 592 aa16.32■□□□□ 0.2
CPSF1-201ENST00000526271 MEIS1O00470 390 aa16.32■□□□□ 0.2
CPSF1-201ENST00000526271 MAFGO15525 162 aa16.32■□□□□ 0.2
CPSF1-201ENST00000526271 FAM86B2P0C5J1 330 aa16.32■□□□□ 0.2
CPSF1-201ENST00000526271 NRIP1P48552 1158 aa16.32■□□□□ 0.2
CPSF1-201ENST00000526271 STAT5BP51692 787 aa16.32■□□□□ 0.2
CPSF1-201ENST00000526271 ERVFC1P60507 584 aa16.32■□□□□ 0.2
CPSF1-201ENST00000526271 EXOSC10Q01780 885 aaKnown RBP16.32■□□□□ 0.2
CPSF1-201ENST00000526271 COASYQ13057 564 aa16.32■□□□□ 0.2
CPSF1-201ENST00000526271 KCNC3Q14003 757 aa16.32■□□□□ 0.2
CPSF1-201ENST00000526271 CBX2Q14781 532 aaPredicted RBP16.32■□□□□ 0.2
CPSF1-201ENST00000526271 APOA5Q6Q788 366 aa16.32■□□□□ 0.2
CPSF1-201ENST00000526271 NFXL1Q6ZNB6 911 aa16.32■□□□□ 0.2
CPSF1-201ENST00000526271 RSPH3Q86UC2 560 aa16.32■□□□□ 0.2
CPSF1-201ENST00000526271 RASEFQ8IZ41 740 aa16.32■□□□□ 0.2
CPSF1-201ENST00000526271 ATP8B4Q8TF62 1192 aa16.32■□□□□ 0.2
CPSF1-201ENST00000526271 CFAP54Q96N23 3096 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms