RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 TRMT1LQ7Z2T5 733 aaKnown RBP23.64■■□□□ 1.37
VPS28-203ENST00000524521 TMCO2Q7Z6W1 182 aaPredicted RBP23.64■■□□□ 1.37
VPS28-203ENST00000524521 SEPT8Q92599 483 aa23.64■■□□□ 1.37
VPS28-203ENST00000524521 KIF2CQ99661 725 aa23.64■■□□□ 1.37
VPS28-203ENST00000524521 ZBED2Q9BTP6 218 aa23.64■■□□□ 1.37
VPS28-203ENST00000524521 TEKT3Q9BXF9 490 aa23.64■■□□□ 1.37
VPS28-203ENST00000524521 GABBR1Q9UBS5 961 aa23.64■■□□□ 1.37
VPS28-203ENST00000524521 WDR64B1ANS9 1081 aa23.63■■□□□ 1.37
VPS28-203ENST00000524521 CHMP2AO43633 222 aa23.63■■□□□ 1.37
VPS28-203ENST00000524521 ATP4AP20648 1035 aa23.63■■□□□ 1.37
VPS28-203ENST00000524521 PPP2R2DQ66LE6 453 aa23.63■■□□□ 1.37
VPS28-203ENST00000524521 MOXD1Q6UVY6 613 aa23.63■■□□□ 1.37
VPS28-203ENST00000524521 PIK3AP1Q6ZUJ8 805 aa23.63■■□□□ 1.37
VPS28-203ENST00000524521 DISC1Q9NRI5 854 aa23.63■■□□□ 1.37
VPS28-203ENST00000524521 DDX25Q9UHL0 483 aaKnown RBP23.63■■□□□ 1.37
VPS28-203ENST00000524521 PCDHA2Q9Y5H9 948 aa23.63■■□□□ 1.37
VPS28-203ENST00000524521 MAFBQ9Y5Q3 323 aaPredicted RBP23.63■■□□□ 1.37
VPS28-203ENST00000524521 TLL1O43897 1013 aa23.62■■□□□ 1.37
VPS28-203ENST00000524521 CA3P07451 260 aa23.62■■□□□ 1.37
VPS28-203ENST00000524521 FOSL2P15408 326 aa23.62■■□□□ 1.37
VPS28-203ENST00000524521 KLRC1P26715 233 aa23.62■■□□□ 1.37
VPS28-203ENST00000524521 KRT2P35908 639 aa23.62■■□□□ 1.37
VPS28-203ENST00000524521 FOSBP53539 338 aa23.62■■□□□ 1.37
VPS28-203ENST00000524521 MTHFD1LQ6UB35 978 aa23.62■■□□□ 1.37
VPS28-203ENST00000524521 NEK8Q86SG6 692 aa23.62■■□□□ 1.37
VPS28-203ENST00000524521 CCDC83Q8IWF9 413 aa23.62■■□□□ 1.37
VPS28-203ENST00000524521 MBOAT7Q96N66 472 aa23.62■■□□□ 1.37
VPS28-203ENST00000524521 UNC45AQ9H3U1 944 aa23.62■■□□□ 1.37
VPS28-203ENST00000524521 PRDM12Q9H4Q4 367 aa23.62■■□□□ 1.37
VPS28-203ENST00000524521 BRMS1Q9HCU9 246 aa23.62■■□□□ 1.37
VPS28-203ENST00000524521 CDY2AQ9Y6F7 541 aa23.62■■□□□ 1.37
VPS28-203ENST00000524521 PSMD10O75832 226 aa23.61■■□□□ 1.37
VPS28-203ENST00000524521 RPLP2P05387 115 aaKnown RBP23.61■■□□□ 1.37
VPS28-203ENST00000524521 GHRP10912 638 aa23.61■■□□□ 1.37
VPS28-203ENST00000524521 MRPS6P82932 125 aaKnown RBP23.61■■□□□ 1.37
VPS28-203ENST00000524521 MGAT3Q09327 533 aa23.61■■□□□ 1.37
VPS28-203ENST00000524521 ST3GAL1Q11201 340 aa23.61■■□□□ 1.37
VPS28-203ENST00000524521 TRIM29Q14134 588 aa23.61■■□□□ 1.37
VPS28-203ENST00000524521 ZNF484Q5JVG2 852 aa23.61■■□□□ 1.37
VPS28-203ENST00000524521 FAM117BQ6P1L5 589 aa23.61■■□□□ 1.37
VPS28-203ENST00000524521 LIN28BQ6ZN17 250 aaKnown RBP eCLIP23.61■■□□□ 1.37
VPS28-203ENST00000524521 BBXQ8WY36 941 aaPredicted RBP23.61■■□□□ 1.37
VPS28-203ENST00000524521 ZSCAN31Q96LW9 406 aaPredicted RBP23.61■■□□□ 1.37
VPS28-203ENST00000524521 IFIH1Q9BYX4 1025 aaKnown RBP23.61■■□□□ 1.37
VPS28-203ENST00000524521 SFNP31947 248 aa23.6■■□□□ 1.37
VPS28-203ENST00000524521 RBM25P49756 843 aaKnown RBP23.6■■□□□ 1.37
VPS28-203ENST00000524521 JAK3P52333 1124 aa23.6■■□□□ 1.37
VPS28-203ENST00000524521 TMEM62Q0P6H9 643 aa23.6■■□□□ 1.37
VPS28-203ENST00000524521 NR5A1Q13285 461 aa23.6■■□□□ 1.37
VPS28-203ENST00000524521 EARS2Q5JPH6 523 aaKnown RBP23.6■■□□□ 1.37
VPS28-203ENST00000524521 IER5Q5VY09 327 aa23.6■■□□□ 1.37
VPS28-203ENST00000524521 MIER3Q7Z3K6 550 aa23.6■■□□□ 1.37
VPS28-203ENST00000524521 GAS2L1Q99501 681 aaPredicted RBP23.6■■□□□ 1.37
VPS28-203ENST00000524521 COL1A2P08123 1366 aa23.6■■□□□ 1.37
VPS28-203ENST00000524521 MYH9P35579 1960 aaKnown RBP23.6■■□□□ 1.37
VPS28-203ENST00000524521 SMIM35A0A1B0GVV1 85 aa23.59■■□□□ 1.37
VPS28-203ENST00000524521 M0QZ92 97 aa23.59■■□□□ 1.37
VPS28-203ENST00000524521 SLC37A4O43826 429 aa23.59■■□□□ 1.37
VPS28-203ENST00000524521 CCNT1O60563 726 aaKnown RBP23.59■■□□□ 1.37
VPS28-203ENST00000524521 AMHP03971 560 aa23.59■■□□□ 1.37
VPS28-203ENST00000524521 LPIN1Q14693 890 aa23.59■■□□□ 1.37
VPS28-203ENST00000524521 ETNPPLQ8TBG4 499 aa23.59■■□□□ 1.37
VPS28-203ENST00000524521 APBB2Q92870 758 aa23.59■■□□□ 1.37
VPS28-203ENST00000524521 MYO9BQ13459 2157 aa23.59■■□□□ 1.37
VPS28-203ENST00000524521 FAM205CA6NFA0 338 aa23.58■■□□□ 1.37
VPS28-203ENST00000524521 GJB5O95377 273 aa23.58■■□□□ 1.37
VPS28-203ENST00000524521 MMP1P03956 469 aa23.58■■□□□ 1.37
VPS28-203ENST00000524521 GCFC2P16383 781 aaKnown RBP23.58■■□□□ 1.37
VPS28-203ENST00000524521 FBXO47Q5MNV8 452 aa23.58■■□□□ 1.37
VPS28-203ENST00000524521 KRT40Q6A162 431 aa23.58■■□□□ 1.37
VPS28-203ENST00000524521 PPP4R3AQ6IN85 833 aa23.58■■□□□ 1.37
VPS28-203ENST00000524521 MYOCDQ8IZQ8 938 aa23.58■■□□□ 1.37
VPS28-203ENST00000524521 NME8Q8N427 588 aa23.58■■□□□ 1.37
VPS28-203ENST00000524521 SLC17A8Q8NDX2 589 aa23.58■■□□□ 1.37
VPS28-203ENST00000524521 MAFAQ8NHW3 353 aaPredicted RBP23.58■■□□□ 1.37
VPS28-203ENST00000524521 NAP1L4Q99733 375 aaKnown RBP23.58■■□□□ 1.37
VPS28-203ENST00000524521 UPF2Q9HAU5 1272 aaKnown RBP23.58■■□□□ 1.37
VPS28-203ENST00000524521 NRBP2Q9NSY0 501 aa23.58■■□□□ 1.37
VPS28-203ENST00000524521 PTPRSQ13332 1948 aa23.58■■□□□ 1.37
VPS28-203ENST00000524521 ZBTB42B2RXF5 422 aa23.57■■□□□ 1.36
VPS28-203ENST00000524521 BTBD18B2RXH4 712 aa23.57■■□□□ 1.36
VPS28-203ENST00000524521 ZNF862O60290 1169 aa23.57■■□□□ 1.36
VPS28-203ENST00000524521 MARCH6O60337 910 aa23.57■■□□□ 1.36
VPS28-203ENST00000524521 MKRN4PQ13434 485 aaPredicted RBP23.57■■□□□ 1.36
VPS28-203ENST00000524521 RDM1Q8NG50 284 aa23.57■■□□□ 1.36
VPS28-203ENST00000524521 FAM167AQ96KS9 214 aa23.57■■□□□ 1.36
VPS28-203ENST00000524521 RAD9AQ99638 391 aa23.57■■□□□ 1.36
VPS28-203ENST00000524521 LLPHQ9BRT6 129 aaKnown RBP23.57■■□□□ 1.36
VPS28-203ENST00000524521 CERS4Q9HA82 394 aa23.57■■□□□ 1.36
VPS28-203ENST00000524521 TRPV2Q9Y5S1 764 aa23.57■■□□□ 1.36
VPS28-203ENST00000524521 IGSF9BQ9UPX0 1349 aa23.57■■□□□ 1.36
VPS28-203ENST00000524521 TAP1Q03518 808 aa23.56■■□□□ 1.36
VPS28-203ENST00000524521 UGCGQ16739 394 aa23.56■■□□□ 1.36
VPS28-203ENST00000524521 DIS3L2Q8IYB7 885 aaKnown RBP23.56■■□□□ 1.36
VPS28-203ENST00000524521 KIAA0319LQ8IZA0 1049 aa23.56■■□□□ 1.36
VPS28-203ENST00000524521 TNFRSF25Q93038 417 aa23.56■■□□□ 1.36
VPS28-203ENST00000524521 FAM20AQ96MK3 541 aa23.56■■□□□ 1.36
VPS28-203ENST00000524521 CELF4Q9BZC1 486 aaKnown RBP23.56■■□□□ 1.36
VPS28-203ENST00000524521 SH2B1Q9NRF2 756 aaPredicted RBP23.56■■□□□ 1.36
VPS28-203ENST00000524521 LOC101059915A0A1B0GWI6 518 aaPredicted RBP23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms