RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 VTI1AQ96AJ9 217 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 CCT8L2Q96SF2 557 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 ELAC2Q9BQ52 826 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 DIS3Q9Y2L1 958 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 NPHP3-ACAD11A0A0J9YXS1 232 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 LRRC10BA6NIK2 292 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 GDF11O95390 407 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 MFAP3P55082 362 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 ADCY1Q08828 1119 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 STRN3Q13033 797 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 ZNF211Q13398 564 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 CAPN12Q6ZSI9 719 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 MICAL1Q8TDZ2 1067 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 ZNF473Q8WTR7 871 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 ZNF577Q9BSK1 485 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 MAD2L2Q9UI95 211 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 FAM205AQ6ZU69 1335 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 FRMD3A2A2Y4 597 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 SART1O43290 800 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 HIP1RO75146 1068 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 RPS6KA4O75676 772 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 GUCY2CP25092 1073 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 KLRC1P26715 233 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 LSP1P33241 339 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 FAM196AQ6ZSG2 479 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 RHOT2Q8IXI1 618 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 SLITRK6Q9H5Y7 841 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 PEAK1Q9H792 1746 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 MYO1FO00160 1098 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 RAD51CO43502 376 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 ADCY2Q08462 1091 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 AP3B2Q13367 1082 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 NAB2Q15742 525 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 XKR9Q5GH70 373 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 NSMFQ6X4W1 530 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 VGLL2Q8N8G2 317 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 PROCA1Q8NCQ7 364 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 KLHL29Q96CT2 875 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 RAB3IPQ96QF0 476 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 DHX36Q9H2U1 1008 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 TCHHQ07283 1943 aa9.11□□□□□ -0.95
LIMCH1-216ENST00000512820 SERPINB2P05120 415 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 BMP3P12645 472 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 ACTN1P12814 892 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 RASA1P20936 1047 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 CDK17Q00537 523 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 FIGNQ5HY92 759 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 SYDE2Q5VT97 1194 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 WDR78Q5VTH9 848 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 KSR1Q8IVT5 923 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 DAGLBQ8NCG7 672 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 MCUR1Q96AQ8 359 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 NT5C1BQ96P26 610 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 MAK16Q9BXY0 300 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 ALDH1B1P30837 517 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 RASSF2P50749 326 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 ARHGAP4P98171 946 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 TSNAXIP1Q2TAA8 658 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 TBC1D10BQ4KMP7 808 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 OTUD6AQ7L8S5 288 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 LRP10Q7Z4F1 713 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 GLYCTKQ8IVS8 523 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 ARL8AQ96BM9 186 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 C1orf112Q9NSG2 853 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 PODXLO00592 558 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 AKR1B1P15121 316 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 PRLRP16471 622 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 MAPK4P31152 587 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 DRAP1Q14919 205 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 SMIM5Q71RC9 77 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 FRMD5Q7Z6J6 570 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 TBC1D1Q86TI0 1168 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 BBOF1Q8ND07 529 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 OR2W6PQ8NHA6 318 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.1□□□□□ -0.952e-6■■■■■ 44.5
LIMCH1-216ENST00000512820 P3H4Q92791 437 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 ACCSQ96QU6 501 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 WDR11Q9BZH6 1224 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 ZNF335Q9H4Z2 1342 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 DKC1O60832 514 aaKnown RBP eCLIP9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 NEBLO76041 1014 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 NSFP46459 744 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 SEC24CP53992 1094 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 PMS2P54278 862 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 TRIP13Q15645 432 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 FOXR1Q6PIV2 292 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 HVCN1Q96D96 273 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 HOOK2Q96ED9 719 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 RNPC3Q96LT9 517 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 SEMA6BQ9H3T3 888 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 ARHGAP20Q9P2F6 1191 aa9.1□□□□□ -0.95
LIMCH1-216ENST00000512820 KCNQ2O43526 872 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 ACSL3O95573 720 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 ATF7P17544 494 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 KLRK1P26718 216 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 MAN1A1P33908 653 aa9.09□□□□□ -0.95
LIMCH1-216ENST00000512820 IL9RQ01113 521 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms