RNA–Protein interactions for RNA: ENST00000508871.5

NEDD4-209, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 5,707 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-209ENST00000508871 MKRN2Q9H000 416 aaKnown RBP4.29□□□□□ -1.72
NEDD4-209ENST00000508871 CLSTN2Q9H4D0 955 aa4.29□□□□□ -1.72
NEDD4-209ENST00000508871 CATSPERZQ9NTU4 200 aa4.29□□□□□ -1.72
NEDD4-209ENST00000508871 PCDH11XQ9BZA7 1347 aa4.29□□□□□ -1.72
NEDD4-209ENST00000508871 PCDH11YQ9BZA8 1340 aa4.29□□□□□ -1.72
NEDD4-209ENST00000508871 DDX3XO00571 662 aaKnown RBP eCLIP4.29□□□□□ -1.72
NEDD4-209ENST00000508871 PLCG1P19174 1290 aa4.29□□□□□ -1.72
NEDD4-209ENST00000508871 GCH1P30793 250 aa4.29□□□□□ -1.72
NEDD4-209ENST00000508871 VPS41P49754 854 aa4.29□□□□□ -1.72
NEDD4-209ENST00000508871 ETFRF1Q6IPR1 90 aa4.29□□□□□ -1.72
NEDD4-209ENST00000508871 TOM1L2Q6ZVM7 507 aa4.29□□□□□ -1.72
NEDD4-209ENST00000508871 TBATAQ96M53 351 aa4.29□□□□□ -1.72
NEDD4-209ENST00000508871 SLF1Q9BQI6 1058 aa4.29□□□□□ -1.72
NEDD4-209ENST00000508871 C22orf23Q9BZE7 217 aa4.29□□□□□ -1.72
NEDD4-209ENST00000508871 ADAM19Q9H013 955 aa4.29□□□□□ -1.72
NEDD4-209ENST00000508871 PPIEQ9UNP9 301 aaKnown RBP4.29□□□□□ -1.72
NEDD4-209ENST00000508871 A0A087WZG4 1122 aa4.29□□□□□ -1.72
NEDD4-209ENST00000508871 CCT2P78371 535 aaKnown RBP4.29□□□□□ -1.72
NEDD4-209ENST00000508871 TMEM67Q5HYA8 995 aa4.29□□□□□ -1.72
NEDD4-209ENST00000508871 XRRA1Q6P2D8 792 aa4.29□□□□□ -1.72
NEDD4-209ENST00000508871 ANKRD23Q86SG2 305 aa4.29□□□□□ -1.72
NEDD4-209ENST00000508871 MAP4K3Q8IVH8 894 aa4.29□□□□□ -1.72
NEDD4-209ENST00000508871 SSH1Q8WYL5 1049 aa4.29□□□□□ -1.72
NEDD4-209ENST00000508871 EIF3CQ99613 913 aaKnown RBP4.29□□□□□ -1.72
NEDD4-209ENST00000508871 DSCC1Q9BVC3 393 aa4.29□□□□□ -1.72
NEDD4-209ENST00000508871 UPF2Q9HAU5 1272 aaKnown RBP4.29□□□□□ -1.72
NEDD4-209ENST00000508871 FAM114A2Q9NRY5 505 aa4.29□□□□□ -1.72
NEDD4-209ENST00000508871 TRMT1Q9NXH9 659 aaKnown RBP4.29□□□□□ -1.72
NEDD4-209ENST00000508871 KDM6AO15550 1401 aaPredicted RBP4.29□□□□□ -1.72
NEDD4-209ENST00000508871 ERBB4Q15303 1308 aa4.29□□□□□ -1.72
NEDD4-209ENST00000508871 SCN7AQ01118 1682 aa4.29□□□□□ -1.72
NEDD4-209ENST00000508871 A0A1W2PQJ5 194 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 RNMTO43148 476 aaKnown RBP4.28□□□□□ -1.72
NEDD4-209ENST00000508871 MTSS1O43312 755 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 CSPG5O95196 566 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 MBD3O95983 291 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 ARAFP10398 606 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 TRIM27P14373 513 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 HLA-DPA1P20036 260 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 GCGRP47871 477 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 ST13P50502 369 aaKnown RBP4.28□□□□□ -1.72
NEDD4-209ENST00000508871 TYRO3Q06418 890 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 RASGRF1Q13972 1273 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 SLC30A6Q6NXT4 461 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 MZT2BQ6NZ67 158 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 SLC22A25Q6T423 547 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 GALNT13Q8IUC8 556 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 ZSCAN1Q8NBB4 408 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 IFT74Q96LB3 600 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 DHRS4Q9BTZ2 278 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 PUS7LQ9H0K6 701 aaKnown RBP4.28□□□□□ -1.72
NEDD4-209ENST00000508871 HPF1Q9NWY4 346 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 UTP6Q9NYH9 597 aaKnown RBP4.28□□□□□ -1.72
NEDD4-209ENST00000508871 TBK1Q9UHD2 729 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 CTNNA3Q9UI47 895 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 PRSS47A8MTI9 375 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 SGK1O00141 431 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 MCF2LO15068 1137 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 DDX3YO15523 660 aaKnown RBP4.28□□□□□ -1.72
NEDD4-209ENST00000508871 GGPS1O95749 300 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 IRS1P35568 1242 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 NOP2P46087 812 aaKnown RBP4.28□□□□□ -1.72
NEDD4-209ENST00000508871 PIP4K2AP48426 406 aaPredicted RBP4.28□□□□□ -1.72
NEDD4-209ENST00000508871 PAPOLAP51003 745 aaKnown RBP4.28□□□□□ -1.72
NEDD4-209ENST00000508871 GDF10P55107 478 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 NFE2Q16621 373 aaPredicted RBP4.28□□□□□ -1.72
NEDD4-209ENST00000508871 FAM47CQ5HY64 1035 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 CCDC80Q76M96 950 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 CDC37L1Q7L3B6 337 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 TAS1R3Q7RTX0 852 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 C1orf216Q8TAB5 229 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 SNRNP27Q8WVK2 155 aaKnown RBP4.28□□□□□ -1.72
NEDD4-209ENST00000508871 PSPC1Q8WXF1 523 aaKnown RBP4.28□□□□□ -1.72
NEDD4-209ENST00000508871 ZNF496Q96IT1 587 aaPredicted RBP4.28□□□□□ -1.72
NEDD4-209ENST00000508871 TMEM74Q96NL1 305 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 ORAI2Q96SN7 254 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 KCTD5Q9NXV2 234 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 CLIC5Q9NZA1 410 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 DSEQ9UL01 958 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 KLHL20Q9Y2M5 609 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 CRYL1Q9Y2S2 319 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 WDR17Q8IZU2 1322 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 PTGES3LE9PB15 166 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 RPLP2P05387 115 aaKnown RBP4.28□□□□□ -1.72
NEDD4-209ENST00000508871 CUL1Q13616 776 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 CAMK4Q16566 473 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 ZSCAN23Q3MJ62 389 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 KLHL17Q6TDP4 642 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 TRIML2Q8N7C3 387 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 NINJ1Q92982 152 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 KCNK17Q96T54 332 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 ALG1Q9BT22 464 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 PRR14Q9BWN1 585 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 FAM192AQ9GZU8 254 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 ABCG8Q9H221 673 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 ZBTB40Q9NUA8 1239 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 ARMCX3Q9UH62 379 aaPredicted RBP4.28□□□□□ -1.72
NEDD4-209ENST00000508871 TSPYL4Q9UJ04 414 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 SRPK3Q9UPE1 567 aa4.28□□□□□ -1.72
NEDD4-209ENST00000508871 TLR6Q9Y2C9 796 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms