RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 SUCLA2Q9P2R7 463 aaPredicted RBP18.63■□□□□ 0.57
SQSTM1-211ENST00000506690 ARPP21Q9UBL0 812 aaPredicted RBP18.63■□□□□ 0.57
SQSTM1-211ENST00000506690 AGAP1Q9UPQ3 857 aa18.63■□□□□ 0.57
SQSTM1-211ENST00000506690 ORC2Q13416 577 aaPredicted RBP18.63■□□□□ 0.57
SQSTM1-211ENST00000506690 SUSD4Q5VX71 490 aa18.63■□□□□ 0.57
SQSTM1-211ENST00000506690 RAD54LQ92698 747 aa18.63■□□□□ 0.57
SQSTM1-211ENST00000506690 SPDL1Q96EA4 605 aa18.63■□□□□ 0.57
SQSTM1-211ENST00000506690 ZNF570Q96NI8 536 aa18.63■□□□□ 0.57
SQSTM1-211ENST00000506690 ATP8A2Q9NTI2 1148 aa18.63■□□□□ 0.57
SQSTM1-211ENST00000506690 SAMD15Q9P1V8 674 aa18.63■□□□□ 0.57
SQSTM1-211ENST00000506690 NAGPAQ9UK23 515 aa18.63■□□□□ 0.57
SQSTM1-211ENST00000506690 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.63■□□□□ 0.57
SQSTM1-211ENST00000506690 COL16A1Q07092 1604 aaPredicted RBP18.63■□□□□ 0.57
SQSTM1-211ENST00000506690 GNA14O95837 355 aa18.62■□□□□ 0.57
SQSTM1-211ENST00000506690 SHBGP04278 402 aa18.62■□□□□ 0.57
SQSTM1-211ENST00000506690 PTPROQ16827 1216 aa18.62■□□□□ 0.57
SQSTM1-211ENST00000506690 CCDC152Q4G0S7 254 aa18.62■□□□□ 0.57
SQSTM1-211ENST00000506690 ACSBG1Q96GR2 724 aa18.62■□□□□ 0.57
SQSTM1-211ENST00000506690 MTMR9Q96QG7 549 aa18.62■□□□□ 0.57
SQSTM1-211ENST00000506690 KIF13BQ9NQT8 1826 aa18.62■□□□□ 0.57
SQSTM1-211ENST00000506690 ATP8B3O60423 1300 aa18.62■□□□□ 0.57
SQSTM1-211ENST00000506690 NQO1P15559 274 aaKnown RBP18.62■□□□□ 0.57
SQSTM1-211ENST00000506690 TXKP42681 527 aa18.62■□□□□ 0.57
SQSTM1-211ENST00000506690 FXR2P51116 673 aaKnown RBP eCLIP18.62■□□□□ 0.57
SQSTM1-211ENST00000506690 TFAP4Q01664 338 aa18.62■□□□□ 0.57
SQSTM1-211ENST00000506690 ICA1Q05084 483 aa18.62■□□□□ 0.57
SQSTM1-211ENST00000506690 FAM133BQ5BKY9 247 aaKnown RBP18.62■□□□□ 0.57
SQSTM1-211ENST00000506690 PEX26Q7Z412 305 aa18.62■□□□□ 0.57
SQSTM1-211ENST00000506690 CRNKL1Q9BZJ0 848 aaKnown RBP18.62■□□□□ 0.57
SQSTM1-211ENST00000506690 GCKP35557 465 aa18.61■□□□□ 0.57
SQSTM1-211ENST00000506690 NSUN4Q96CB9 384 aaKnown RBP18.61■□□□□ 0.57
SQSTM1-211ENST00000506690 SLC4A9Q96Q91 983 aa18.61■□□□□ 0.57
SQSTM1-211ENST00000506690 ELAC2Q9BQ52 826 aaKnown RBP18.61■□□□□ 0.57
SQSTM1-211ENST00000506690 SELENOSQ9BQE4 189 aa18.61■□□□□ 0.57
SQSTM1-211ENST00000506690 PABPC3Q9H361 631 aaKnown RBP18.61■□□□□ 0.57
SQSTM1-211ENST00000506690 ZDHHC18Q9NUE0 388 aa18.61■□□□□ 0.57
SQSTM1-211ENST00000506690 TTC7AQ9ULT0 858 aaPredicted RBP18.61■□□□□ 0.57
SQSTM1-211ENST00000506690 NENFQ9UMX5 172 aa18.61■□□□□ 0.57
SQSTM1-211ENST00000506690 BZW2Q9Y6E2 419 aaKnown RBP18.61■□□□□ 0.57
SQSTM1-211ENST00000506690 KAT6BQ8WYB5 2073 aa18.61■□□□□ 0.57
SQSTM1-211ENST00000506690 DPY19L2P1Q6NXN4 242 aa18.61■□□□□ 0.57
SQSTM1-211ENST00000506690 HES6Q96HZ4 224 aa18.61■□□□□ 0.57
SQSTM1-211ENST00000506690 CDK5RAP3Q96JB5 506 aa18.61■□□□□ 0.57
SQSTM1-211ENST00000506690 TRIM51Q9BSJ1 452 aa18.61■□□□□ 0.57
SQSTM1-211ENST00000506690 LRRC27Q9C0I9 530 aa18.61■□□□□ 0.57
SQSTM1-211ENST00000506690 MTFR1LQ9H019 292 aa18.61■□□□□ 0.57
SQSTM1-211ENST00000506690 RAB17Q9H0T7 212 aa18.61■□□□□ 0.57
SQSTM1-211ENST00000506690 KANSL2Q9H9L4 492 aa18.61■□□□□ 0.57
SQSTM1-211ENST00000506690 ABCF3Q9NUQ8 709 aa18.61■□□□□ 0.57
SQSTM1-211ENST00000506690 SCN7AQ01118 1682 aa18.6■□□□□ 0.57
SQSTM1-211ENST00000506690 PALM3A6NDB9 673 aaPredicted RBP18.6■□□□□ 0.57
SQSTM1-211ENST00000506690 SMNDC1O75940 238 aaKnown RBP eCLIP18.6■□□□□ 0.57
SQSTM1-211ENST00000506690 RARAP10276 462 aa18.6■□□□□ 0.57
SQSTM1-211ENST00000506690 NAPAP54920 295 aa18.6■□□□□ 0.57
SQSTM1-211ENST00000506690 NCALDP61601 193 aa18.6■□□□□ 0.57
SQSTM1-211ENST00000506690 KCNJ2P63252 427 aa18.6■□□□□ 0.57
SQSTM1-211ENST00000506690 ALKBH5Q6P6C2 394 aaKnown RBP18.6■□□□□ 0.57
SQSTM1-211ENST00000506690 NT5DC3Q86UY8 548 aa18.6■□□□□ 0.57
SQSTM1-211ENST00000506690 TBCKQ8TEA7 893 aa18.6■□□□□ 0.57
SQSTM1-211ENST00000506690 INTS9Q9NV88 658 aaKnown RBP18.6■□□□□ 0.57
SQSTM1-211ENST00000506690 A0A0A6YYK5 440 aaPredicted RBP18.6■□□□□ 0.57
SQSTM1-211ENST00000506690 CCDC169A6NNP5 214 aa18.6■□□□□ 0.57
SQSTM1-211ENST00000506690 CCND1P24385 295 aa18.6■□□□□ 0.57
SQSTM1-211ENST00000506690 COASYQ13057 564 aa18.6■□□□□ 0.57
SQSTM1-211ENST00000506690 DUPD1Q68J44 220 aa18.6■□□□□ 0.57
SQSTM1-211ENST00000506690 KCNK18Q7Z418 384 aa18.6■□□□□ 0.57
SQSTM1-211ENST00000506690 DNAJC19Q96DA6 116 aa18.6■□□□□ 0.57
SQSTM1-211ENST00000506690 PRMT1Q99873 361 aaKnown RBP18.6■□□□□ 0.57
SQSTM1-211ENST00000506690 SLC5A4Q9NY91 659 aa18.6■□□□□ 0.57
SQSTM1-211ENST00000506690 SMCO2A6NFE2 343 aa18.59■□□□□ 0.57
SQSTM1-211ENST00000506690 ALDH5A1P51649 535 aaPredicted RBP18.59■□□□□ 0.57
SQSTM1-211ENST00000506690 GALNTL6Q49A17 601 aa18.59■□□□□ 0.57
SQSTM1-211ENST00000506690 DNAAF5Q86Y56 855 aa18.59■□□□□ 0.57
SQSTM1-211ENST00000506690 NEK9Q8TD19 979 aa18.59■□□□□ 0.57
SQSTM1-211ENST00000506690 CNKSR1Q969H4 720 aa18.59■□□□□ 0.57
SQSTM1-211ENST00000506690 C6orf50Q9HD87 102 aa18.59■□□□□ 0.57
SQSTM1-211ENST00000506690 COL4A1P02462 1669 aa18.59■□□□□ 0.57
SQSTM1-211ENST00000506690 UBOX5O94941 541 aa18.59■□□□□ 0.57
SQSTM1-211ENST00000506690 OAS1P00973 400 aaKnown RBP18.59■□□□□ 0.57
SQSTM1-211ENST00000506690 GNA11P29992 359 aa18.59■□□□□ 0.57
SQSTM1-211ENST00000506690 PMS2P54278 862 aa18.59■□□□□ 0.57
SQSTM1-211ENST00000506690 INHBEP58166 350 aa18.59■□□□□ 0.57
SQSTM1-211ENST00000506690 PTENP60484 403 aa18.59■□□□□ 0.57
SQSTM1-211ENST00000506690 TMEM119Q4V9L6 283 aa18.59■□□□□ 0.57
SQSTM1-211ENST00000506690 MIS18BP1Q6P0N0 1132 aa18.59■□□□□ 0.57
SQSTM1-211ENST00000506690 EGFL6Q8IUX8 553 aa18.59■□□□□ 0.57
SQSTM1-211ENST00000506690 SYCE1Q8N0S2 351 aa18.59■□□□□ 0.57
SQSTM1-211ENST00000506690 RNF25Q96BH1 459 aaPredicted RBP18.59■□□□□ 0.57
SQSTM1-211ENST00000506690 NUDT12Q9BQG2 462 aa18.59■□□□□ 0.57
SQSTM1-211ENST00000506690 TRIM31Q9BZY9 425 aa18.59■□□□□ 0.57
SQSTM1-211ENST00000506690 WTIPA6NIX2 430 aaPredicted RBP18.58■□□□□ 0.57
SQSTM1-211ENST00000506690 LIN7AO14910 233 aaPredicted RBP18.58■□□□□ 0.57
SQSTM1-211ENST00000506690 SNX3O60493 162 aa18.58■□□□□ 0.57
SQSTM1-211ENST00000506690 DIAPH2O60879 1101 aa18.58■□□□□ 0.57
SQSTM1-211ENST00000506690 IL6STP40189 918 aaPredicted RBP18.58■□□□□ 0.57
SQSTM1-211ENST00000506690 PRKCIP41743 596 aa18.58■□□□□ 0.57
SQSTM1-211ENST00000506690 NT5C2P49902 561 aa18.58■□□□□ 0.57
SQSTM1-211ENST00000506690 ZNF131P52739 623 aa18.58■□□□□ 0.57
SQSTM1-211ENST00000506690 NPEPPSP55786 919 aa18.58■□□□□ 0.57
SQSTM1-211ENST00000506690 MECOMQ03112 1051 aa18.58■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms