RNA–Protein interactions for RNA: ENST00000506368.5

SCLT1-208, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-208ENST00000506368 TMEM109Q9BVC6 243 aa17.32■□□□□ 0.36
SCLT1-208ENST00000506368 SUCLA2Q9P2R7 463 aaPredicted RBP17.32■□□□□ 0.36
SCLT1-208ENST00000506368 INTUQ9ULD6 942 aa17.32■□□□□ 0.36
SCLT1-208ENST00000506368 KIF13BQ9NQT8 1826 aa17.32■□□□□ 0.36
SCLT1-208ENST00000506368 PP2D1A8MPX8 630 aa17.32■□□□□ 0.36
SCLT1-208ENST00000506368 O00370 1275 aa17.32■□□□□ 0.36
SCLT1-208ENST00000506368 CEP104O60308 925 aa17.32■□□□□ 0.36
SCLT1-208ENST00000506368 ATP2C2O75185 946 aa17.32■□□□□ 0.36
SCLT1-208ENST00000506368 CYP7A1P22680 504 aa17.32■□□□□ 0.36
SCLT1-208ENST00000506368 FKBP3Q00688 224 aaKnown RBP17.32■□□□□ 0.36
SCLT1-208ENST00000506368 BLMHQ13867 455 aa17.32■□□□□ 0.36
SCLT1-208ENST00000506368 C6orf118Q5T5N4 469 aa17.32■□□□□ 0.36
SCLT1-208ENST00000506368 PNMA8AQ86V59 439 aaPredicted RBP17.32■□□□□ 0.36
SCLT1-208ENST00000506368 ATXN2LQ8WWM7 1075 aaKnown RBP17.32■□□□□ 0.36
SCLT1-208ENST00000506368 FMO2Q99518 471 aa17.32■□□□□ 0.36
SCLT1-208ENST00000506368 TMEM60Q9H2L4 133 aa17.32■□□□□ 0.36
SCLT1-208ENST00000506368 SLC39A2Q9NP94 309 aa17.32■□□□□ 0.36
SCLT1-208ENST00000506368 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.32■□□□□ 0.36
SCLT1-208ENST00000506368 NOC2LQ9Y3T9 749 aaKnown RBP17.32■□□□□ 0.36
SCLT1-208ENST00000506368 COL4A3BPQ9Y5P4 624 aa17.32■□□□□ 0.36
SCLT1-208ENST00000506368 GOLGB1Q14789 3259 aaKnown RBP17.31■□□□□ 0.36
SCLT1-208ENST00000506368 KRIT1O00522 736 aa17.31■□□□□ 0.36
SCLT1-208ENST00000506368 IBSPP21815 317 aaPredicted RBP17.31■□□□□ 0.36
SCLT1-208ENST00000506368 KLHL30Q0D2K2 578 aa17.31■□□□□ 0.36
SCLT1-208ENST00000506368 ASIC2Q16515 512 aa17.31■□□□□ 0.36
SCLT1-208ENST00000506368 CMPK2Q5EBM0 449 aa17.31■□□□□ 0.36
SCLT1-208ENST00000506368 KRT25Q7Z3Z0 450 aa17.31■□□□□ 0.36
SCLT1-208ENST00000506368 THOC1Q96FV9 657 aaKnown RBP17.31■□□□□ 0.36
SCLT1-208ENST00000506368 NAP1L3Q99457 506 aaPredicted RBP17.31■□□□□ 0.36
SCLT1-208ENST00000506368 SLC5A4Q9NY91 659 aa17.31■□□□□ 0.36
SCLT1-208ENST00000506368 PCDHA6Q9UN73 950 aa17.31■□□□□ 0.36
SCLT1-208ENST00000506368 PCDHA8Q9Y5H6 950 aa17.31■□□□□ 0.36
SCLT1-208ENST00000506368 FAM205AQ6ZU69 1335 aa17.31■□□□□ 0.36
SCLT1-208ENST00000506368 FRMD3A2A2Y4 597 aa17.3■□□□□ 0.36
SCLT1-208ENST00000506368 E7ENQ6 273 aa17.3■□□□□ 0.36
SCLT1-208ENST00000506368 TLR2O60603 784 aa17.3■□□□□ 0.36
SCLT1-208ENST00000506368 FESP07332 822 aa17.3■□□□□ 0.36
SCLT1-208ENST00000506368 CHN1P15882 459 aa17.3■□□□□ 0.36
SCLT1-208ENST00000506368 SKIV2L2P42285 1042 aaKnown RBP17.3■□□□□ 0.36
SCLT1-208ENST00000506368 DRG2P55039 364 aaKnown RBP17.3■□□□□ 0.36
SCLT1-208ENST00000506368 TAOK1Q7L7X3 1001 aa17.3■□□□□ 0.36
SCLT1-208ENST00000506368 SLFN11Q7Z7L1 901 aa17.3■□□□□ 0.36
SCLT1-208ENST00000506368 LRRC57Q8N9N7 239 aa17.3■□□□□ 0.36
SCLT1-208ENST00000506368 AGAP11Q8TF27 550 aa17.3■□□□□ 0.36
SCLT1-208ENST00000506368 TANGO6Q9C0B7 1094 aa17.3■□□□□ 0.36
SCLT1-208ENST00000506368 NEUROG2Q9H2A3 272 aa17.3■□□□□ 0.36
SCLT1-208ENST00000506368 ETAA1Q9NY74 926 aa17.3■□□□□ 0.36
SCLT1-208ENST00000506368 QSER1Q2KHR3 1735 aa17.3■□□□□ 0.36
SCLT1-208ENST00000506368 FAM187AA6NFU0 413 aa17.3■□□□□ 0.36
SCLT1-208ENST00000506368 RFC4P35249 363 aa17.3■□□□□ 0.36
SCLT1-208ENST00000506368 LACTBP83111 547 aaPredicted RBP17.3■□□□□ 0.36
SCLT1-208ENST00000506368 BIRC2Q13490 618 aa17.3■□□□□ 0.36
SCLT1-208ENST00000506368 HLFQ16534 295 aa17.3■□□□□ 0.36
SCLT1-208ENST00000506368 TBC1D1Q86TI0 1168 aaPredicted RBP17.3■□□□□ 0.36
SCLT1-208ENST00000506368 MIGA1Q8NAN2 632 aa17.3■□□□□ 0.36
SCLT1-208ENST00000506368 NEK9Q8TD19 979 aa17.3■□□□□ 0.36
SCLT1-208ENST00000506368 RIOK1Q9BRS2 568 aaKnown RBP17.3■□□□□ 0.36
SCLT1-208ENST00000506368 PABPC3Q9H361 631 aaKnown RBP17.3■□□□□ 0.36
SCLT1-208ENST00000506368 INTS9Q9NV88 658 aaKnown RBP17.3■□□□□ 0.36
SCLT1-208ENST00000506368 CPSF2Q9P2I0 782 aaKnown RBP17.3■□□□□ 0.36
SCLT1-208ENST00000506368 LAMB1P07942 1786 aa17.29■□□□□ 0.36
SCLT1-208ENST00000506368 DAPK3O43293 454 aa17.29■□□□□ 0.36
SCLT1-208ENST00000506368 NOL4O94818 638 aa17.29■□□□□ 0.36
SCLT1-208ENST00000506368 ATP11AP98196 1134 aa17.29■□□□□ 0.36
SCLT1-208ENST00000506368 GALNTL6Q49A17 601 aa17.29■□□□□ 0.36
SCLT1-208ENST00000506368 CCDC88AQ3V6T2 1871 aa17.29■□□□□ 0.36
SCLT1-208ENST00000506368 A0A087X0T9 212 aa17.28■□□□□ 0.36
SCLT1-208ENST00000506368 CAMTA2O94983 1202 aa17.28■□□□□ 0.36
SCLT1-208ENST00000506368 SNUPNO95149 360 aaKnown RBP17.28■□□□□ 0.36
SCLT1-208ENST00000506368 FAM228BP0C875 321 aa17.28■□□□□ 0.36
SCLT1-208ENST00000506368 ZBTB48P10074 688 aaPredicted RBP17.28■□□□□ 0.36
SCLT1-208ENST00000506368 PECAM1P16284 738 aaPredicted RBP17.28■□□□□ 0.36
SCLT1-208ENST00000506368 LRRC15Q8TF66 581 aa17.28■□□□□ 0.36
SCLT1-208ENST00000506368 SDR42E1Q8WUS8 393 aa17.28■□□□□ 0.36
SCLT1-208ENST00000506368 EEF2KMTQ96G04 330 aa17.28■□□□□ 0.36
SCLT1-208ENST00000506368 LZTS2Q9BRK4 669 aa17.28■□□□□ 0.36
SCLT1-208ENST00000506368 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.28■□□□□ 0.36
SCLT1-208ENST00000506368 PARP2Q9UGN5 583 aa17.28■□□□□ 0.36
SCLT1-208ENST00000506368 NUP98P52948 1817 aa17.28■□□□□ 0.36
SCLT1-208ENST00000506368 A6NHS1 94 aa17.28■□□□□ 0.36
SCLT1-208ENST00000506368 STXBP3O00186 592 aa17.28■□□□□ 0.36
SCLT1-208ENST00000506368 SUN1O94901 812 aa17.28■□□□□ 0.36
SCLT1-208ENST00000506368 NEFHP12036 1026 aa17.28■□□□□ 0.36
SCLT1-208ENST00000506368 ATP2A2P16615 1042 aaKnown RBP17.28■□□□□ 0.36
SCLT1-208ENST00000506368 DNA2P51530 1060 aa17.28■□□□□ 0.36
SCLT1-208ENST00000506368 DHX34Q14147 1143 aaKnown RBP17.28■□□□□ 0.36
SCLT1-208ENST00000506368 DENND2CQ68D51 928 aa17.28■□□□□ 0.36
SCLT1-208ENST00000506368 TMC4Q7Z404 712 aa17.28■□□□□ 0.36
SCLT1-208ENST00000506368 VPS36Q86VN1 386 aa17.28■□□□□ 0.36
SCLT1-208ENST00000506368 CFAP61Q8NHU2 1237 aa17.28■□□□□ 0.36
SCLT1-208ENST00000506368 ZNF570Q96NI8 536 aa17.28■□□□□ 0.36
SCLT1-208ENST00000506368 KIF9Q9HAQ2 790 aa17.28■□□□□ 0.36
SCLT1-208ENST00000506368 NLRC4Q9NPP4 1024 aa17.28■□□□□ 0.36
SCLT1-208ENST00000506368 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.28■□□□□ 0.36
SCLT1-208ENST00000506368 CTNNAL1Q9UBT7 734 aa17.28■□□□□ 0.36
SCLT1-208ENST00000506368 PNMA2Q9UL42 364 aa17.28■□□□□ 0.36
SCLT1-208ENST00000506368 RGS16O15492 202 aaPredicted RBP17.27■□□□□ 0.36
SCLT1-208ENST00000506368 SNX3O60493 162 aa17.27■□□□□ 0.36
SCLT1-208ENST00000506368 GFPT2O94808 682 aa17.27■□□□□ 0.36
SCLT1-208ENST00000506368 OAS1P00973 400 aaKnown RBP17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms