RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 MYH15Q9Y2K3 1946 aa11.29□□□□□ -0.6
NUP54-203ENST00000504173 A6NJR5 290 aa11.29□□□□□ -0.6
NUP54-203ENST00000504173 LAD1O00515 517 aa11.29□□□□□ -0.6
NUP54-203ENST00000504173 CTAGE5O15320 804 aa11.29□□□□□ -0.6
NUP54-203ENST00000504173 CCNE2O96020 404 aa11.29□□□□□ -0.6
NUP54-203ENST00000504173 MYL3P08590 195 aa11.29□□□□□ -0.6
NUP54-203ENST00000504173 TXKP42681 527 aa11.29□□□□□ -0.6
NUP54-203ENST00000504173 ACTR2P61160 394 aa11.29□□□□□ -0.6
NUP54-203ENST00000504173 ATP2C1P98194 919 aaPredicted RBP11.29□□□□□ -0.6
NUP54-203ENST00000504173 DGKDQ16760 1214 aa11.29□□□□□ -0.6
NUP54-203ENST00000504173 ZNF746Q6NUN9 644 aaPredicted RBP11.29□□□□□ -0.6
NUP54-203ENST00000504173 SEPT1Q8WYJ6 367 aa11.29□□□□□ -0.6
NUP54-203ENST00000504173 HLA-CQ95604 372 aa11.29□□□□□ -0.6
NUP54-203ENST00000504173 TOX2Q96NM4 488 aa11.29□□□□□ -0.6
NUP54-203ENST00000504173 USP28Q96RU2 1077 aa11.29□□□□□ -0.6
NUP54-203ENST00000504173 GPR20Q99678 358 aa11.29□□□□□ -0.6
NUP54-203ENST00000504173 NKX2-4Q9H2Z4 354 aa11.29□□□□□ -0.6
NUP54-203ENST00000504173 UNC45AQ9H3U1 944 aa11.29□□□□□ -0.6
NUP54-203ENST00000504173 TTC12Q9H892 705 aaPredicted RBP11.29□□□□□ -0.6
NUP54-203ENST00000504173 POLR3EQ9NVU0 708 aa11.29□□□□□ -0.6
NUP54-203ENST00000504173 CHMP5Q9NZZ3 219 aa11.29□□□□□ -0.6
NUP54-203ENST00000504173 PCDHA12Q9UN75 941 aa11.29□□□□□ -0.6
NUP54-203ENST00000504173 TELO2Q9Y4R8 837 aa11.29□□□□□ -0.6
NUP54-203ENST00000504173 SAMM50Q9Y512 469 aa11.29□□□□□ -0.6
NUP54-203ENST00000504173 MTCH2Q9Y6C9 303 aa11.29□□□□□ -0.6
NUP54-203ENST00000504173 PKD1L2Q7Z442 2459 aa11.28□□□□□ -0.6
NUP54-203ENST00000504173 KMT2BQ9UMN6 2715 aaPredicted RBP11.28□□□□□ -0.6
NUP54-203ENST00000504173 GSTTP1A0A1W2PQM5 241 aa11.28□□□□□ -0.6
NUP54-203ENST00000504173 MOXD2PA6NHM9 499 aa11.28□□□□□ -0.6
NUP54-203ENST00000504173 WDR64B1ANS9 1081 aa11.28□□□□□ -0.6
NUP54-203ENST00000504173 KPNA6O60684 536 aa11.28□□□□□ -0.6
NUP54-203ENST00000504173 PPFIA4O75335 1185 aa11.28□□□□□ -0.6
NUP54-203ENST00000504173 TIMP1P01033 207 aa11.28□□□□□ -0.6
NUP54-203ENST00000504173 SFNP31947 248 aa11.28□□□□□ -0.6
NUP54-203ENST00000504173 TCF7P36402 384 aaPredicted RBP11.28□□□□□ -0.6
NUP54-203ENST00000504173 DNM1Q05193 864 aaKnown RBP11.28□□□□□ -0.6
NUP54-203ENST00000504173 PPP2R5CQ13362 524 aa11.28□□□□□ -0.6
NUP54-203ENST00000504173 PPIGQ13427 754 aaKnown RBP eCLIP11.28□□□□□ -0.6
NUP54-203ENST00000504173 STK38Q15208 465 aa11.28□□□□□ -0.6
NUP54-203ENST00000504173 KCNA10Q16322 511 aa11.28□□□□□ -0.6
NUP54-203ENST00000504173 TMEM266Q2M3C6 531 aa11.28□□□□□ -0.6
NUP54-203ENST00000504173 UTP14CQ5TAP6 766 aaKnown RBP11.28□□□□□ -0.6
NUP54-203ENST00000504173 NCAPH2Q6IBW4 605 aa11.28□□□□□ -0.6
NUP54-203ENST00000504173 MFSD5Q6N075 450 aa11.28□□□□□ -0.6
NUP54-203ENST00000504173 MIS18BP1Q6P0N0 1132 aa11.28□□□□□ -0.6
NUP54-203ENST00000504173 ANKRD33Q7Z3H0 272 aa11.28□□□□□ -0.6
NUP54-203ENST00000504173 MIER3Q7Z3K6 550 aa11.28□□□□□ -0.6
NUP54-203ENST00000504173 SMAP1Q8IYB5 467 aaPredicted RBP11.28□□□□□ -0.6
NUP54-203ENST00000504173 C4orf32Q8N8J7 132 aa11.28□□□□□ -0.6
NUP54-203ENST00000504173 TSEN34Q9BSV6 310 aaKnown RBP11.28□□□□□ -0.6
NUP54-203ENST00000504173 TMEM39AQ9NV64 488 aa11.28□□□□□ -0.6
NUP54-203ENST00000504173 TFIP11Q9UBB9 837 aaKnown RBP11.28□□□□□ -0.6
NUP54-203ENST00000504173 VAV3Q9UKW4 847 aa11.28□□□□□ -0.6
NUP54-203ENST00000504173 PHF24Q9UPV7 400 aa11.28□□□□□ -0.6
NUP54-203ENST00000504173 YBX2Q9Y2T7 364 aaKnown RBP11.28□□□□□ -0.6
NUP54-203ENST00000504173 BACH1O14867 736 aa11.27□□□□□ -0.61
NUP54-203ENST00000504173 LGALS2P05162 132 aa11.27□□□□□ -0.61
NUP54-203ENST00000504173 ASGR1P07306 291 aa11.27□□□□□ -0.61
NUP54-203ENST00000504173 PSAPP07602 524 aa11.27□□□□□ -0.61
NUP54-203ENST00000504173 SUPT20HL2P0C7V6 817 aa11.27□□□□□ -0.61
NUP54-203ENST00000504173 ZNF286BP0CG31 522 aa11.27□□□□□ -0.61
NUP54-203ENST00000504173 HOXD8P13378 290 aaPredicted RBP11.27□□□□□ -0.61
NUP54-203ENST00000504173 NCLP19338 710 aaKnown RBP11.27□□□□□ -0.61
NUP54-203ENST00000504173 PRPHP41219 470 aa11.27□□□□□ -0.61
NUP54-203ENST00000504173 TECP42680 631 aa11.27□□□□□ -0.61
NUP54-203ENST00000504173 JAK3P52333 1124 aa11.27□□□□□ -0.61
NUP54-203ENST00000504173 ACLYP53396 1101 aa11.27□□□□□ -0.61
NUP54-203ENST00000504173 KRT85P78386 507 aa11.27□□□□□ -0.61
NUP54-203ENST00000504173 FAAP100Q0VG06 881 aa11.27□□□□□ -0.61
NUP54-203ENST00000504173 ARL6IP4Q66PJ3 421 aaKnown RBP11.27□□□□□ -0.61
NUP54-203ENST00000504173 ATL3Q6DD88 541 aa11.27□□□□□ -0.61
NUP54-203ENST00000504173 CCSAPQ6IQ19 270 aaPredicted RBP11.27□□□□□ -0.61
NUP54-203ENST00000504173 PSRC1Q6PGN9 363 aaPredicted RBP11.27□□□□□ -0.61
NUP54-203ENST00000504173 CXCL17Q6UXB2 119 aa11.27□□□□□ -0.61
NUP54-203ENST00000504173 DTHD1Q6ZMT9 781 aa11.27□□□□□ -0.61
NUP54-203ENST00000504173 GJD3Q8N144 294 aa11.27□□□□□ -0.61
NUP54-203ENST00000504173 RDM1Q8NG50 284 aa11.27□□□□□ -0.61
NUP54-203ENST00000504173 FERMT2Q96AC1 680 aa11.27□□□□□ -0.61
NUP54-203ENST00000504173 MTG1Q9BT17 334 aaPredicted RBP11.27□□□□□ -0.61
NUP54-203ENST00000504173 RAB34Q9BZG1 259 aa11.27□□□□□ -0.61
NUP54-203ENST00000504173 DISC1Q9NRI5 854 aa11.27□□□□□ -0.61
NUP54-203ENST00000504173 CFAP45Q9UL16 551 aa11.27□□□□□ -0.61
NUP54-203ENST00000504173 PCDHA10Q9Y5I2 948 aa11.27□□□□□ -0.61
NUP54-203ENST00000504173 A0A1W2PQ45 241 aaPredicted RBP11.26□□□□□ -0.61
NUP54-203ENST00000504173 A0A1W2PQY0 241 aa11.26□□□□□ -0.61
NUP54-203ENST00000504173 POTEMA6NI47 508 aa11.26□□□□□ -0.61
NUP54-203ENST00000504173 GTPBP6O43824 516 aaPredicted RBP11.26□□□□□ -0.61
NUP54-203ENST00000504173 LGR5O75473 907 aa11.26□□□□□ -0.61
NUP54-203ENST00000504173 CABYRO75952 493 aa11.26□□□□□ -0.61
NUP54-203ENST00000504173 ATG7O95352 703 aa11.26□□□□□ -0.61
NUP54-203ENST00000504173 YEATS4O95619 227 aa11.26□□□□□ -0.61
NUP54-203ENST00000504173 MARCKSP29966 332 aaPredicted RBP11.26□□□□□ -0.61
NUP54-203ENST00000504173 NASPP49321 788 aaPredicted RBP11.26□□□□□ -0.61
NUP54-203ENST00000504173 FXR2P51116 673 aaKnown RBP eCLIP11.26□□□□□ -0.61
NUP54-203ENST00000504173 PURAQ00577 322 aaKnown RBP11.26□□□□□ -0.61
NUP54-203ENST00000504173 SPIRE1Q08AE8 756 aa11.26□□□□□ -0.61
NUP54-203ENST00000504173 SLC39A14Q15043 492 aa11.26□□□□□ -0.61
NUP54-203ENST00000504173 PTPAQ15257 358 aa11.26□□□□□ -0.61
NUP54-203ENST00000504173 FAM160B1Q5W0V3 765 aa11.26□□□□□ -0.61
NUP54-203ENST00000504173 B3GNT9Q6UX72 402 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 149.7 ms