RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 EHD4Q9H223 541 aa17.67■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 PCDHGC5Q9Y5F6 944 aa17.67■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 EGFRP00533 1210 aa17.66■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 HOXD13P35453 343 aa17.66■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 PSMC6P62333 389 aa17.66■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 GIT2Q14161 759 aa17.66■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 CDC37Q16543 378 aaPredicted RBP17.66■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 CFAP221Q4G0U5 840 aa17.66■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 GLE1Q53GS7 698 aaKnown RBP17.66■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 MEI1Q5TIA1 1274 aa17.66■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 C8orf74Q6P047 294 aa17.66■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 EMBQ6PCB8 327 aa17.66■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 CATSPER3Q86XQ3 398 aa17.66■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 FAM133AQ8N9E0 248 aa17.66■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 CAVIN3Q969G5 261 aa17.66■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 CCDC17Q96LX7 622 aa17.66■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 RNF14Q9UBS8 474 aa17.66■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 ZNRF3Q9ULT6 936 aa17.66■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 TRIM66O15016 1216 aa17.66■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 FTCDO95954 541 aa17.66■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 EEF2P13639 858 aaKnown RBP17.66■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 RBM26Q5T8P6 1007 aaKnown RBP17.66■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 MOXD1Q6UVY6 613 aa17.66■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 PPP4R3CPQ6ZMV5 832 aa17.66■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 SIAH1Q8IUQ4 282 aa17.66■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 ADAMTS1Q9UHI8 967 aa17.66■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 FAM196BA6NMK8 535 aa17.65■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 CETN3O15182 167 aa17.65■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 DDNO94850 711 aaPredicted RBP17.65■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 GLI1P08151 1106 aa17.65■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 SPATA31C1P0DKV0 1188 aa17.65■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 ACTN1P12814 892 aa17.65■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 ARID5AQ03989 594 aa17.65■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 KLHL30Q0D2K2 578 aa17.65■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 ASIC2Q16515 512 aa17.65■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 EPM2AIP1Q7L775 607 aaPredicted RBP17.65■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 SLFN12Q8IYM2 578 aa17.65■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 FAM76AQ8TAV0 307 aa17.65■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 GDF3Q9NR23 364 aa17.65■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 TRAF3IP3Q9Y228 551 aa17.65■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 GOLGA6CA6NDK9 693 aa17.64■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 GOLGA6DP0CG33 693 aa17.64■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 LMNB1P20700 586 aa17.64■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 NR2F2P24468 414 aa17.64■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 NOP2P46087 812 aaKnown RBP17.64■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 CACNB3P54284 484 aa17.64■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 ARHGAP4P98171 946 aa17.64■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 SLFN13Q68D06 897 aa17.64■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 IRF2BP2Q7Z5L9 587 aa17.64■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 DCAF4Q8WV16 495 aa17.64■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 TEKT1Q969V4 418 aa17.64■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 LENG9Q96B70 501 aa17.64■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 INPP4AQ96PE3 977 aaPredicted RBP17.64■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 LUC7LQ9NQ29 371 aaKnown RBP17.64■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 GOLGA6AQ9NYA3 693 aa17.64■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 HDAC9Q9UKV0 1011 aa17.64■□□□□ 0.42
MSH5-SAPCD1-208ENST00000498473 GRID2IPA4D2P6 1211 aa17.64■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 PPFIA4O75335 1185 aa17.64■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 KRT18P05783 430 aaKnown RBP17.64■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 SLC9A1P19634 815 aa17.64■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 RBM5P52756 815 aaKnown RBP eCLIP17.64■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 AP3B2Q13367 1082 aa17.64■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 KIAA0753Q2KHM9 967 aa17.64■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 SYT2Q8N9I0 419 aaPredicted RBP17.64■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.64■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 ZHX3Q9H4I2 956 aa17.64■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 PLEKHA4Q9H4M7 779 aa17.64■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 NYAP2Q9P242 653 aa17.64■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 PACSIN2Q9UNF0 486 aaPredicted RBP17.64■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 MEIS1O00470 390 aa17.63■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 Q4G0T1 1027 aa17.63■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 PRR16Q569H4 304 aa17.63■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 FRMD5Q7Z6J6 570 aa17.63■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 REEP2Q9BRK0 252 aa17.63■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 ZSCAN5CA6NGD5 496 aaPredicted RBP17.63■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 DDTLA6NHG4 134 aaPredicted RBP17.63■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 BTNL10A8MVZ5 291 aa17.63■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 GOLGA8KD6RF30 607 aa17.63■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 RAD21O60216 631 aa17.63■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 EPB41P11171 864 aaKnown RBP17.63■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 RPA1P27694 616 aa17.63■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 CRKP46108 304 aa17.63■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 CARSP49589 748 aaKnown RBP17.63■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 SNAP25P60880 206 aa17.63■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 PTK2Q05397 1052 aa17.63■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 PABPC4Q13310 644 aaKnown RBP eCLIP17.63■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 NNTQ13423 1086 aa17.63■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 ENOX2Q16206 610 aaKnown RBP17.63■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 KNOP1Q1ED39 458 aaKnown RBP17.63■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 ALS2CLQ60I27 953 aa17.63■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 ZNF571Q7Z3V5 609 aaPredicted RBP17.63■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 SFR1Q86XK3 245 aa17.63■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 ZNF526Q8TF50 670 aaPredicted RBP17.63■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 PLCB1Q9NQ66 1216 aa17.63■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 RSPH14Q9UHP6 348 aa17.63■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 TBX3O15119 743 aa17.62■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 DNA2P51530 1060 aa17.62■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 TTMPQ5BVD1 217 aa17.62■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 STRIP1Q5VSL9 837 aa17.62■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 SH3BP5LQ7L8J4 393 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms