RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.15■□□□□ 0.5
CCDC88B-210ENST00000494566 SERPINA10Q9UK55 444 aa18.15■□□□□ 0.5
CCDC88B-210ENST00000494566 CYP3A7-CYP3A51PA0A087WV96 503 aa18.15■□□□□ 0.5
CCDC88B-210ENST00000494566 CYP3A7P24462 503 aa18.15■□□□□ 0.5
CCDC88B-210ENST00000494566 IRAK1P51617 712 aa18.15■□□□□ 0.5
CCDC88B-210ENST00000494566 FBXW10Q5XX13 1052 aa18.15■□□□□ 0.5
CCDC88B-210ENST00000494566 SLFN12Q8IYM2 578 aa18.15■□□□□ 0.5
CCDC88B-210ENST00000494566 EPB41L5Q9HCM4 733 aa18.15■□□□□ 0.5
CCDC88B-210ENST00000494566 DNM3Q9UQ16 869 aa18.15■□□□□ 0.5
CCDC88B-210ENST00000494566 GLI1P08151 1106 aa18.14■□□□□ 0.49
CCDC88B-210ENST00000494566 HOXD13P35453 343 aa18.14■□□□□ 0.49
CCDC88B-210ENST00000494566 EPS15P42566 896 aa18.14■□□□□ 0.49
CCDC88B-210ENST00000494566 CDK17Q00537 523 aa18.14■□□□□ 0.49
CCDC88B-210ENST00000494566 DCAF17Q5H9S7 520 aaPredicted RBP18.14■□□□□ 0.49
CCDC88B-210ENST00000494566 C8orf74Q6P047 294 aa18.14■□□□□ 0.49
CCDC88B-210ENST00000494566 TRIM59Q8IWR1 403 aa18.14■□□□□ 0.49
CCDC88B-210ENST00000494566 CCDC43Q96MW1 224 aaKnown RBP18.14■□□□□ 0.49
CCDC88B-210ENST00000494566 KRT12Q99456 494 aa18.14■□□□□ 0.49
CCDC88B-210ENST00000494566 HPDP32754 393 aaPredicted RBP18.14■□□□□ 0.49
CCDC88B-210ENST00000494566 AP3B2Q13367 1082 aa18.14■□□□□ 0.49
CCDC88B-210ENST00000494566 CCDC70Q6NSX1 233 aa18.14■□□□□ 0.49
CCDC88B-210ENST00000494566 PCNTO95613 3336 aa18.14■□□□□ 0.49
CCDC88B-210ENST00000494566 SLC9A1P19634 815 aa18.13■□□□□ 0.49
CCDC88B-210ENST00000494566 CASP4P49662 377 aa18.13■□□□□ 0.49
CCDC88B-210ENST00000494566 KCNH2Q12809 1159 aa18.13■□□□□ 0.49
CCDC88B-210ENST00000494566 TTMPQ5BVD1 217 aa18.13■□□□□ 0.49
CCDC88B-210ENST00000494566 HAUS3Q68CZ6 603 aa18.13■□□□□ 0.49
CCDC88B-210ENST00000494566 MBOAT7Q96N66 472 aa18.13■□□□□ 0.49
CCDC88B-210ENST00000494566 VEZTQ9HBM0 779 aa18.13■□□□□ 0.49
CCDC88B-210ENST00000494566 PPFIA4O75335 1185 aa18.13■□□□□ 0.49
CCDC88B-210ENST00000494566 SREBF1P36956 1147 aa18.13■□□□□ 0.49
CCDC88B-210ENST00000494566 GUCY1A3Q02108 690 aa18.13■□□□□ 0.49
CCDC88B-210ENST00000494566 TCERG1LQ5VWI1 586 aa18.13■□□□□ 0.49
CCDC88B-210ENST00000494566 DDX42Q86XP3 938 aaKnown RBP eCLIP18.13■□□□□ 0.49
CCDC88B-210ENST00000494566 OR2W6PQ8NHA6 318 aa18.13■□□□□ 0.49
CCDC88B-210ENST00000494566 WDR18Q9BV38 432 aa18.13■□□□□ 0.49
CCDC88B-210ENST00000494566 CAPS2Q9BXY5 557 aa18.13■□□□□ 0.49
CCDC88B-210ENST00000494566 GLIS2Q9BZE0 524 aaPredicted RBP18.13■□□□□ 0.49
CCDC88B-210ENST00000494566 PLSCR1O15162 318 aa18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 SFMBT2Q5VUG0 894 aa18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 GMCL1P1Q8NEA9 526 aa18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 GMCL1Q96IK5 515 aa18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 EIF2AK1Q9BQI3 630 aaKnown RBP18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 FBXO28Q9NVF7 368 aa18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 PKD2L1Q9P0L9 805 aa18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 BCCIPQ9P287 314 aaKnown RBP eCLIP18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 ADAMTS1Q9UHI8 967 aa18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 FAM184BQ9ULE4 1060 aa18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 PALMO75781 387 aa18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 GCNT3O95395 438 aa18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 RPA1P27694 616 aa18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 ASTE1Q2TB18 679 aaPredicted RBP18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 ZNF662Q6ZS27 426 aa18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 TPH2Q8IWU9 490 aa18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 TRIM58Q8NG06 486 aa18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 ZIM3Q96PE6 472 aa18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 VAV3Q9UKW4 847 aa18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 JRKLQ9Y4A0 524 aa18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 C10orf71Q711Q0 1435 aa18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 ABCB11O95342 1321 aa18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 TRMT1LQ7Z2T5 733 aaKnown RBP18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 NAP1L4Q99733 375 aaKnown RBP18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 TSGA10Q9BZW7 698 aa18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 GLT8D2Q9H1C3 349 aa18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 CEP72Q9P209 647 aa18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 HDAC9Q9UKV0 1011 aa18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 HYOU1Q9Y4L1 999 aa18.12■□□□□ 0.49
CCDC88B-210ENST00000494566 CETN3O15182 167 aa18.11■□□□□ 0.49
CCDC88B-210ENST00000494566 PAFAH1B1P43034 410 aa18.11■□□□□ 0.49
CCDC88B-210ENST00000494566 SEC24CP53992 1094 aa18.11■□□□□ 0.49
CCDC88B-210ENST00000494566 Q4G0T1 1027 aa18.11■□□□□ 0.49
CCDC88B-210ENST00000494566 CC2D2BQ6DHV5 1058 aa18.11■□□□□ 0.49
CCDC88B-210ENST00000494566 GJB7Q6PEY0 223 aa18.11■□□□□ 0.49
CCDC88B-210ENST00000494566 ADAT2Q7Z6V5 191 aaKnown RBP18.11■□□□□ 0.49
CCDC88B-210ENST00000494566 SYT2Q8N9I0 419 aaPredicted RBP18.11■□□□□ 0.49
CCDC88B-210ENST00000494566 TLR10Q9BXR5 811 aa18.11■□□□□ 0.49
CCDC88B-210ENST00000494566 BCS1LQ9Y276 419 aa18.11■□□□□ 0.49
CCDC88B-210ENST00000494566 A0A087X0T9 212 aa18.11■□□□□ 0.49
CCDC88B-210ENST00000494566 HEXIM1O94992 359 aaKnown RBP18.11■□□□□ 0.49
CCDC88B-210ENST00000494566 FAM228BP0C875 321 aa18.11■□□□□ 0.49
CCDC88B-210ENST00000494566 STAT2P52630 851 aa18.11■□□□□ 0.49
CCDC88B-210ENST00000494566 HLTFQ14527 1009 aaKnown RBP eCLIP18.11■□□□□ 0.49
CCDC88B-210ENST00000494566 ZC2HC1CQ53FD0 456 aaPredicted RBP18.11■□□□□ 0.49
CCDC88B-210ENST00000494566 ERMNQ8TAM6 284 aa18.11■□□□□ 0.49
CCDC88B-210ENST00000494566 AENQ8WTP8 325 aaKnown RBP18.11■□□□□ 0.49
CCDC88B-210ENST00000494566 DDX39AO00148 427 aaKnown RBP18.1■□□□□ 0.49
CCDC88B-210ENST00000494566 AKAP3O75969 853 aa18.1■□□□□ 0.49
CCDC88B-210ENST00000494566 KLRC1P26715 233 aa18.1■□□□□ 0.49
CCDC88B-210ENST00000494566 NMT1P30419 496 aaKnown RBP18.1■□□□□ 0.49
CCDC88B-210ENST00000494566 SLC9C1Q4G0N8 1177 aa18.1■□□□□ 0.49
CCDC88B-210ENST00000494566 MAATS1Q7Z4T9 603 aa18.1■□□□□ 0.49
CCDC88B-210ENST00000494566 DYDC2Q96IM9 177 aa18.1■□□□□ 0.49
CCDC88B-210ENST00000494566 CEP63Q96MT8 703 aa18.1■□□□□ 0.49
CCDC88B-210ENST00000494566 ALS2CR12Q96Q35 445 aa18.1■□□□□ 0.49
CCDC88B-210ENST00000494566 AP1M1Q9BXS5 423 aa18.1■□□□□ 0.49
CCDC88B-210ENST00000494566 TMEM39BQ9GZU3 492 aa18.1■□□□□ 0.49
CCDC88B-210ENST00000494566 TSPYL1Q9H0U9 437 aa18.1■□□□□ 0.49
CCDC88B-210ENST00000494566 PCDHB13Q9Y5F0 798 aa18.1■□□□□ 0.49
CCDC88B-210ENST00000494566 FAM169AQ9Y6X4 670 aa18.1■□□□□ 0.49
CCDC88B-210ENST00000494566 ANO9A1A5B4 782 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms