RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 SGO2Q562F6 1265 aa13.9□□□□□ -0.18
SHOX2-205ENST00000490689 DPH6Q7L8W6 267 aa13.9□□□□□ -0.18
SHOX2-205ENST00000490689 SH3RF3Q8TEJ3 882 aaPredicted RBP13.9□□□□□ -0.18
SHOX2-205ENST00000490689 RUNDC3BQ96NL0 473 aa13.9□□□□□ -0.18
SHOX2-205ENST00000490689 BHMT2Q9H2M3 363 aa13.9□□□□□ -0.18
SHOX2-205ENST00000490689 VCPKMTQ9H867 229 aa13.9□□□□□ -0.18
SHOX2-205ENST00000490689 BARHL2Q9NY43 387 aa13.9□□□□□ -0.18
SHOX2-205ENST00000490689 FAM205AQ6ZU69 1335 aa13.9□□□□□ -0.18
SHOX2-205ENST00000490689 PVALEFA0A1B0GWK0 134 aa13.9□□□□□ -0.18
SHOX2-205ENST00000490689 TCP11X1B4DZS4 312 aa13.9□□□□□ -0.18
SHOX2-205ENST00000490689 HARSP12081 509 aaKnown RBP13.9□□□□□ -0.18
SHOX2-205ENST00000490689 IL6STP40189 918 aaPredicted RBP13.9□□□□□ -0.18
SHOX2-205ENST00000490689 TRIM28Q13263 835 aaKnown RBP13.9□□□□□ -0.18
SHOX2-205ENST00000490689 RAD54LQ92698 747 aa13.9□□□□□ -0.18
SHOX2-205ENST00000490689 KAT2BQ92831 832 aa13.9□□□□□ -0.18
SHOX2-205ENST00000490689 ZNF622Q969S3 477 aaKnown RBP eCLIP13.9□□□□□ -0.18
SHOX2-205ENST00000490689 NOD2Q9HC29 1040 aa13.9□□□□□ -0.18
SHOX2-205ENST00000490689 ATF2P15336 505 aa13.9□□□□□ -0.19
SHOX2-205ENST00000490689 SCTRP47872 440 aa13.9□□□□□ -0.19
SHOX2-205ENST00000490689 TMED8Q6PL24 325 aaPredicted RBP13.9□□□□□ -0.19
SHOX2-205ENST00000490689 LRRC8CQ8TDW0 803 aa13.9□□□□□ -0.19
SHOX2-205ENST00000490689 GBP5Q96PP8 586 aa13.9□□□□□ -0.19
SHOX2-205ENST00000490689 LRRC10BA6NIK2 292 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 STAT3P40763 770 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 PTK2Q05397 1052 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 ODR4Q5SWX8 454 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 CCDC62Q6P9F0 684 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 MTA3Q9BTC8 594 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 PITPNM3Q9BZ71 974 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 ZNF804BA4D1E1 1349 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 TMEM131LA2VDJ0 1609 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 SSU72P8A0A1W2PR75 194 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 USP17L15C9J2P7 530 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 USP17L13C9JLJ4 530 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 USP17L11C9JVI0 530 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 USP17L18D6R9N7 530 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 USP17L22D6RA61 530 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 USP17L17D6RBQ6 530 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 USP17L19D6RCP7 530 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 USP17L20D6RJB6 530 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 ATF7P17544 494 aaPredicted RBP13.89□□□□□ -0.19
SHOX2-205ENST00000490689 RASSF2P50749 326 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 SNAP25P60880 206 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 ADCY2Q08462 1091 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 USP17L24Q0WX57 530 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 PSMD2Q13200 908 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 USP17L6PQ6QN14 398 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 SFR1Q86XK3 245 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 SEMA6BQ9H3T3 888 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 SYNCQ9H7C4 482 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 DDX20Q9UHI6 824 aaKnown RBP13.89□□□□□ -0.19
SHOX2-205ENST00000490689 POTEFA5A3E0 1075 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 ZNF233A6NK53 670 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 ECEL1O95672 775 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 POTEIP0CG38 1075 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 MYBL1P10243 752 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 PAX7P23759 505 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 NAB2Q15742 525 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 KLHDC7AQ5VTJ3 777 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 POTEGQ6S5H5 508 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 POTEEQ6S8J3 1075 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 ZNF653Q96CK0 615 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 DUSP9Q99956 384 aaKnown RBP13.89□□□□□ -0.19
SHOX2-205ENST00000490689 UBE2TQ9NPD8 197 aaPredicted RBP13.89□□□□□ -0.19
SHOX2-205ENST00000490689 DNAJC12Q9UKB3 198 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 L3MBTL1Q9Y468 752 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 WDR17Q8IZU2 1322 aa13.89□□□□□ -0.19
SHOX2-205ENST00000490689 EPHB6O15197 1021 aa13.88□□□□□ -0.19
SHOX2-205ENST00000490689 LUC7L3O95232 432 aaKnown RBP13.88□□□□□ -0.19
SHOX2-205ENST00000490689 IL9RQ01113 521 aa13.88□□□□□ -0.19
SHOX2-205ENST00000490689 SH3RF1Q7Z6J0 888 aa13.88□□□□□ -0.19
SHOX2-205ENST00000490689 PIGOQ8TEQ8 1089 aa13.88□□□□□ -0.19
SHOX2-205ENST00000490689 NYXQ9GZU5 481 aa13.88□□□□□ -0.19
SHOX2-205ENST00000490689 THRAP3Q9Y2W1 955 aaKnown RBP13.88□□□□□ -0.19
SHOX2-205ENST00000490689 CCT8L1PA6NM43 557 aa13.88□□□□□ -0.19
SHOX2-205ENST00000490689 BRAFP15056 766 aa13.88□□□□□ -0.19
SHOX2-205ENST00000490689 METTL13Q8N6R0 699 aa13.88□□□□□ -0.19
SHOX2-205ENST00000490689 ARMC2Q8NEN0 867 aa13.88□□□□□ -0.19
SHOX2-205ENST00000490689 ISCUQ9H1K1 167 aa13.88□□□□□ -0.19
SHOX2-205ENST00000490689 FGFR1OP2Q9NVK5 253 aa13.88□□□□□ -0.19
SHOX2-205ENST00000490689 RABGAP1Q9Y3P9 1069 aa13.88□□□□□ -0.19
SHOX2-205ENST00000490689 PBX1P40424 430 aa13.88□□□□□ -0.19
SHOX2-205ENST00000490689 ADGRA1Q86SQ6 560 aa13.88□□□□□ -0.19
SHOX2-205ENST00000490689 CELF1Q92879 486 aaKnown RBP13.88□□□□□ -0.19
SHOX2-205ENST00000490689 TCHPQ9BT92 498 aa13.88□□□□□ -0.19
SHOX2-205ENST00000490689 ZC3H12CQ9C0D7 883 aaKnown RBP13.88□□□□□ -0.19
SHOX2-205ENST00000490689 SH3GLB2Q9NR46 395 aa13.88□□□□□ -0.19
SHOX2-205ENST00000490689 ZNF148Q9UQR1 794 aa13.88□□□□□ -0.19
SHOX2-205ENST00000490689 FOXP2O15409 715 aa13.87□□□□□ -0.19
SHOX2-205ENST00000490689 ITGA4P13612 1032 aa13.87□□□□□ -0.19
SHOX2-205ENST00000490689 GCFC2P16383 781 aaKnown RBP13.87□□□□□ -0.19
SHOX2-205ENST00000490689 MSH2P43246 934 aa13.87□□□□□ -0.19
SHOX2-205ENST00000490689 GTF2IP78347 998 aa13.87□□□□□ -0.19
SHOX2-205ENST00000490689 MYL7Q01449 175 aa13.87□□□□□ -0.19
SHOX2-205ENST00000490689 C10orf76Q5T2E6 689 aa13.87□□□□□ -0.19
SHOX2-205ENST00000490689 NAIF1Q69YI7 327 aaPredicted RBP13.87□□□□□ -0.19
SHOX2-205ENST00000490689 SMIM5Q71RC9 77 aa13.87□□□□□ -0.19
SHOX2-205ENST00000490689 LRRC34Q8IZ02 419 aa13.87□□□□□ -0.19
SHOX2-205ENST00000490689 KIFAP3Q92845 792 aa13.87□□□□□ -0.19
SHOX2-205ENST00000490689 ZKSCAN4Q969J2 545 aaPredicted RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms