RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 MOXD1Q6UVY6 613 aa23.95■■□□□ 1.42
LIME1-207ENST00000489212 HERC6Q8IVU3 1022 aa23.95■■□□□ 1.42
LIME1-207ENST00000489212 ATP8B4Q8TF62 1192 aa23.95■■□□□ 1.42
LIME1-207ENST00000489212 RIT2Q99578 217 aa23.95■■□□□ 1.42
LIME1-207ENST00000489212 MAFBQ9Y5Q3 323 aaPredicted RBP23.95■■□□□ 1.42
LIME1-207ENST00000489212 MICAL3Q7RTP6 2002 aa23.94■■□□□ 1.42
LIME1-207ENST00000489212 CCDC194A0A1B0GVG4 234 aa23.94■■□□□ 1.42
LIME1-207ENST00000489212 SLC37A4O43826 429 aa23.94■■□□□ 1.42
LIME1-207ENST00000489212 GAS7O60861 476 aa23.94■■□□□ 1.42
LIME1-207ENST00000489212 PSAPP07602 524 aa23.94■■□□□ 1.42
LIME1-207ENST00000489212 IKBKEQ14164 716 aa23.94■■□□□ 1.42
LIME1-207ENST00000489212 LRCH2Q5VUJ6 765 aa23.94■■□□□ 1.42
LIME1-207ENST00000489212 PIK3AP1Q6ZUJ8 805 aa23.94■■□□□ 1.42
LIME1-207ENST00000489212 ETNPPLQ8TBG4 499 aa23.94■■□□□ 1.42
LIME1-207ENST00000489212 TNPO1Q92973 898 aaKnown RBP23.94■■□□□ 1.42
LIME1-207ENST00000489212 FAM49AQ9H0Q0 323 aaPredicted RBP23.94■■□□□ 1.42
LIME1-207ENST00000489212 UNC45AQ9H3U1 944 aa23.94■■□□□ 1.42
LIME1-207ENST00000489212 GABBR1Q9UBS5 961 aa23.94■■□□□ 1.42
LIME1-207ENST00000489212 FAM205CA6NFA0 338 aa23.93■■□□□ 1.42
LIME1-207ENST00000489212 WDR64B1ANS9 1081 aa23.93■■□□□ 1.42
LIME1-207ENST00000489212 ZBTB42B2RXF5 422 aa23.93■■□□□ 1.42
LIME1-207ENST00000489212 HBP1O60381 514 aa23.93■■□□□ 1.42
LIME1-207ENST00000489212 PSMD10O75832 226 aa23.93■■□□□ 1.42
LIME1-207ENST00000489212 FOSBP53539 338 aa23.93■■□□□ 1.42
LIME1-207ENST00000489212 NR5A1Q13285 461 aa23.93■■□□□ 1.42
LIME1-207ENST00000489212 LETM2Q2VYF4 491 aa23.93■■□□□ 1.42
LIME1-207ENST00000489212 MTHFD1LQ6UB35 978 aa23.93■■□□□ 1.42
LIME1-207ENST00000489212 CCDC83Q8IWF9 413 aa23.93■■□□□ 1.42
LIME1-207ENST00000489212 TNFRSF25Q93038 417 aa23.93■■□□□ 1.42
LIME1-207ENST00000489212 SLC28A3Q9HAS3 691 aa23.93■■□□□ 1.42
LIME1-207ENST00000489212 DISC1Q9NRI5 854 aa23.93■■□□□ 1.42
LIME1-207ENST00000489212 DDX25Q9UHL0 483 aaKnown RBP23.93■■□□□ 1.42
LIME1-207ENST00000489212 TCEAL9Q9UHQ7 104 aa23.93■■□□□ 1.42
LIME1-207ENST00000489212 SAMM50Q9Y512 469 aa23.93■■□□□ 1.42
LIME1-207ENST00000489212 PCDHA2Q9Y5H9 948 aa23.93■■□□□ 1.42
LIME1-207ENST00000489212 IGSF9BQ9UPX0 1349 aa23.92■■□□□ 1.42
LIME1-207ENST00000489212 CHMP2AO43633 222 aa23.92■■□□□ 1.42
LIME1-207ENST00000489212 ARHGEF15O94989 841 aa23.92■■□□□ 1.42
LIME1-207ENST00000489212 LIN28BQ6ZN17 250 aaKnown RBP eCLIP23.92■■□□□ 1.42
LIME1-207ENST00000489212 NEK8Q86SG6 692 aa23.92■■□□□ 1.42
LIME1-207ENST00000489212 RSPH3Q86UC2 560 aa23.92■■□□□ 1.42
LIME1-207ENST00000489212 TEKT3Q9BXF9 490 aa23.92■■□□□ 1.42
LIME1-207ENST00000489212 EFCAB14O75071 495 aa23.91■■□□□ 1.42
LIME1-207ENST00000489212 CA3P07451 260 aa23.91■■□□□ 1.42
LIME1-207ENST00000489212 KRT2P35908 639 aa23.91■■□□□ 1.42
LIME1-207ENST00000489212 PPP2R2DQ66LE6 453 aa23.91■■□□□ 1.42
LIME1-207ENST00000489212 B3GNT9Q6UX72 402 aa23.91■■□□□ 1.42
LIME1-207ENST00000489212 SEPT8Q92599 483 aa23.91■■□□□ 1.42
LIME1-207ENST00000489212 PRDM12Q9H4Q4 367 aa23.91■■□□□ 1.42
LIME1-207ENST00000489212 CDY2AQ9Y6F7 541 aa23.91■■□□□ 1.42
LIME1-207ENST00000489212 PRUNE2Q8WUY3 3088 aa23.9■■□□□ 1.42
LIME1-207ENST00000489212 EVPLQ92817 2033 aa23.9■■□□□ 1.42
LIME1-207ENST00000489212 ZNF862O60290 1169 aa23.9■■□□□ 1.42
LIME1-207ENST00000489212 MMP1P03956 469 aa23.9■■□□□ 1.42
LIME1-207ENST00000489212 GHRP10912 638 aa23.9■■□□□ 1.42
LIME1-207ENST00000489212 KLRC1P26715 233 aa23.9■■□□□ 1.42
LIME1-207ENST00000489212 MRPS6P82932 125 aaKnown RBP23.9■■□□□ 1.42
LIME1-207ENST00000489212 TMEM62Q0P6H9 643 aa23.9■■□□□ 1.42
LIME1-207ENST00000489212 LPIN1Q14693 890 aa23.9■■□□□ 1.42
LIME1-207ENST00000489212 UGCGQ16739 394 aa23.9■■□□□ 1.42
LIME1-207ENST00000489212 ZNF484Q5JVG2 852 aa23.9■■□□□ 1.42
LIME1-207ENST00000489212 KRT40Q6A162 431 aa23.9■■□□□ 1.42
LIME1-207ENST00000489212 PPP4R3AQ6IN85 833 aa23.9■■□□□ 1.42
LIME1-207ENST00000489212 TRMT1LQ7Z2T5 733 aaKnown RBP23.9■■□□□ 1.42
LIME1-207ENST00000489212 CKAP2LQ8IYA6 745 aa23.9■■□□□ 1.42
LIME1-207ENST00000489212 BBXQ8WY36 941 aaPredicted RBP23.9■■□□□ 1.42
LIME1-207ENST00000489212 COL1A2P08123 1366 aa23.9■■□□□ 1.42
LIME1-207ENST00000489212 SMIM35A0A1B0GVV1 85 aa23.89■■□□□ 1.41
LIME1-207ENST00000489212 FOSL2P15408 326 aa23.89■■□□□ 1.41
LIME1-207ENST00000489212 FBXO47Q5MNV8 452 aa23.89■■□□□ 1.41
LIME1-207ENST00000489212 IFIH1Q9BYX4 1025 aaKnown RBP23.89■■□□□ 1.41
LIME1-207ENST00000489212 KCNMB3Q9NPA1 279 aa23.89■■□□□ 1.41
LIME1-207ENST00000489212 LOXHD1Q8IVV2 1947 aa23.88■■□□□ 1.41
LIME1-207ENST00000489212 LCHNA4D1U4 455 aa23.88■■□□□ 1.41
LIME1-207ENST00000489212 BTBD18B2RXH4 712 aa23.88■■□□□ 1.41
LIME1-207ENST00000489212 KIF28PB7ZC32 967 aa23.88■■□□□ 1.41
LIME1-207ENST00000489212 TLL1O43897 1013 aa23.88■■□□□ 1.41
LIME1-207ENST00000489212 CCNT1O60563 726 aaKnown RBP23.88■■□□□ 1.41
LIME1-207ENST00000489212 GJB5O95377 273 aa23.88■■□□□ 1.41
LIME1-207ENST00000489212 SFNP31947 248 aa23.88■■□□□ 1.41
LIME1-207ENST00000489212 JAK3P52333 1124 aa23.88■■□□□ 1.41
LIME1-207ENST00000489212 MIER3Q7Z3K6 550 aa23.88■■□□□ 1.41
LIME1-207ENST00000489212 ZSCAN31Q96LW9 406 aaPredicted RBP23.88■■□□□ 1.41
LIME1-207ENST00000489212 BRMS1Q9HCU9 246 aa23.88■■□□□ 1.41
LIME1-207ENST00000489212 TRANK1O15050 2925 aa23.87■■□□□ 1.41
LIME1-207ENST00000489212 LOC101059915A0A1B0GWI6 518 aaPredicted RBP23.87■■□□□ 1.41
LIME1-207ENST00000489212 C22orf31O95567 290 aa23.87■■□□□ 1.41
LIME1-207ENST00000489212 RPLP2P05387 115 aaKnown RBP23.87■■□□□ 1.41
LIME1-207ENST00000489212 GCFC2P16383 781 aaKnown RBP23.87■■□□□ 1.41
LIME1-207ENST00000489212 PRKCEQ02156 737 aa23.87■■□□□ 1.41
LIME1-207ENST00000489212 RABEP1Q15276 862 aa23.87■■□□□ 1.41
LIME1-207ENST00000489212 FAM117BQ6P1L5 589 aa23.87■■□□□ 1.41
LIME1-207ENST00000489212 SPRED2Q7Z698 418 aa23.87■■□□□ 1.41
LIME1-207ENST00000489212 DIS3L2Q8IYB7 885 aaKnown RBP23.87■■□□□ 1.41
LIME1-207ENST00000489212 KIAA0319LQ8IZA0 1049 aa23.87■■□□□ 1.41
LIME1-207ENST00000489212 HAS1Q92839 578 aa23.87■■□□□ 1.41
LIME1-207ENST00000489212 APBB2Q92870 758 aa23.87■■□□□ 1.41
LIME1-207ENST00000489212 LLPHQ9BRT6 129 aaKnown RBP23.87■■□□□ 1.41
LIME1-207ENST00000489212 AGO3Q9H9G7 860 aaKnown RBP23.87■■□□□ 1.41
LIME1-207ENST00000489212 SH2B1Q9NRF2 756 aaPredicted RBP23.87■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms