RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 NKX3-2P78367 333 aa11.58□□□□□ -0.56
SKA1-204ENST00000488454 PPP2R5CQ13362 524 aa11.58□□□□□ -0.56
SKA1-204ENST00000488454 SLC39A14Q15043 492 aa11.58□□□□□ -0.56
SKA1-204ENST00000488454 UTP14CQ5TAP6 766 aaKnown RBP11.58□□□□□ -0.56
SKA1-204ENST00000488454 FAM160B1Q5W0V3 765 aa11.58□□□□□ -0.56
SKA1-204ENST00000488454 NCAPH2Q6IBW4 605 aa11.58□□□□□ -0.56
SKA1-204ENST00000488454 ANKLE1Q8NAG6 615 aa11.58□□□□□ -0.56
SKA1-204ENST00000488454 RDM1Q8NG50 284 aa11.58□□□□□ -0.56
SKA1-204ENST00000488454 ERMNQ8TAM6 284 aa11.58□□□□□ -0.56
SKA1-204ENST00000488454 GLG1Q92896 1179 aa11.58□□□□□ -0.56
SKA1-204ENST00000488454 FERMT2Q96AC1 680 aa11.58□□□□□ -0.56
SKA1-204ENST00000488454 UNC45AQ9H3U1 944 aa11.58□□□□□ -0.56
SKA1-204ENST00000488454 DISC1Q9NRI5 854 aa11.58□□□□□ -0.56
SKA1-204ENST00000488454 GSTTP1A0A1W2PQM5 241 aa11.57□□□□□ -0.56
SKA1-204ENST00000488454 MYADML2A6NDP7 307 aa11.57□□□□□ -0.56
SKA1-204ENST00000488454 MOXD2PA6NHM9 499 aa11.57□□□□□ -0.56
SKA1-204ENST00000488454 SPTLC2O15270 562 aa11.57□□□□□ -0.56
SKA1-204ENST00000488454 DKC1O60832 514 aaKnown RBP eCLIP11.57□□□□□ -0.56
SKA1-204ENST00000488454 CABYRO75952 493 aa11.57□□□□□ -0.56
SKA1-204ENST00000488454 YEATS4O95619 227 aa11.57□□□□□ -0.56
SKA1-204ENST00000488454 CCNE2O96020 404 aa11.57□□□□□ -0.56
SKA1-204ENST00000488454 ASGR1P07306 291 aa11.57□□□□□ -0.56
SKA1-204ENST00000488454 CST5P28325 142 aaPredicted RBP11.57□□□□□ -0.56
SKA1-204ENST00000488454 NASPP49321 788 aaPredicted RBP11.57□□□□□ -0.56
SKA1-204ENST00000488454 PDIA5Q14554 519 aa11.57□□□□□ -0.56
SKA1-204ENST00000488454 SWSAP1Q6NVH7 229 aa11.57□□□□□ -0.56
SKA1-204ENST00000488454 ABHD15Q6UXT9 468 aa11.57□□□□□ -0.56
SKA1-204ENST00000488454 LINC00301Q8NCQ3 95 aa11.57□□□□□ -0.56
SKA1-204ENST00000488454 KCNG4Q8TDN1 519 aa11.57□□□□□ -0.56
SKA1-204ENST00000488454 TNPO1Q92973 898 aaKnown RBP11.57□□□□□ -0.56
SKA1-204ENST00000488454 GLT1D1Q96MS3 346 aa11.57□□□□□ -0.56
SKA1-204ENST00000488454 MTG1Q9BT17 334 aaPredicted RBP11.57□□□□□ -0.56
SKA1-204ENST00000488454 KATNAL1Q9BW62 490 aa11.57□□□□□ -0.56
SKA1-204ENST00000488454 FTOQ9C0B1 505 aaKnown RBP eCLIP11.57□□□□□ -0.56
SKA1-204ENST00000488454 SCAND2PQ9GZW5 306 aaPredicted RBP11.57□□□□□ -0.56
SKA1-204ENST00000488454 SMARCAD1Q9H4L7 1026 aa11.57□□□□□ -0.56
SKA1-204ENST00000488454 LRWD1Q9UFC0 647 aa11.57□□□□□ -0.56
SKA1-204ENST00000488454 VAV3Q9UKW4 847 aa11.57□□□□□ -0.56
SKA1-204ENST00000488454 ZNF215Q9UL58 517 aaPredicted RBP11.57□□□□□ -0.56
SKA1-204ENST00000488454 MCM3APO60318 1980 aa11.57□□□□□ -0.56
SKA1-204ENST00000488454 MYH7BA7E2Y1 1941 aa11.56□□□□□ -0.56
SKA1-204ENST00000488454 VWA3AA6NCI4 1184 aa11.56□□□□□ -0.56
SKA1-204ENST00000488454 CTAGE5O15320 804 aa11.56□□□□□ -0.56
SKA1-204ENST00000488454 PPP6R2O75170 966 aa11.56□□□□□ -0.56
SKA1-204ENST00000488454 ATG7O95352 703 aa11.56□□□□□ -0.56
SKA1-204ENST00000488454 SUPT20HL2P0C7V6 817 aa11.56□□□□□ -0.56
SKA1-204ENST00000488454 MARCKSP29966 332 aaPredicted RBP11.56□□□□□ -0.56
SKA1-204ENST00000488454 ME1P48163 572 aa11.56□□□□□ -0.56
SKA1-204ENST00000488454 STAT5BP51692 787 aa11.56□□□□□ -0.56
SKA1-204ENST00000488454 ACLYP53396 1101 aa11.56□□□□□ -0.56
SKA1-204ENST00000488454 CHMP4BP1P59074 171 aa11.56□□□□□ -0.56
SKA1-204ENST00000488454 PTPAQ15257 358 aa11.56□□□□□ -0.56
SKA1-204ENST00000488454 EPHA7Q15375 998 aa11.56□□□□□ -0.56
SKA1-204ENST00000488454 KRT79Q5XKE5 535 aa11.56□□□□□ -0.56
SKA1-204ENST00000488454 PDXDC2PQ6P474 469 aa11.56□□□□□ -0.56
SKA1-204ENST00000488454 CXCL17Q6UXB2 119 aa11.56□□□□□ -0.56
SKA1-204ENST00000488454 CKAP2LQ8IYA6 745 aa11.56□□□□□ -0.56
SKA1-204ENST00000488454 KRI1Q8N9T8 703 aaKnown RBP11.56□□□□□ -0.56
SKA1-204ENST00000488454 ATP6V0A1Q93050 837 aa11.56□□□□□ -0.56
SKA1-204ENST00000488454 SPATA32Q96LK8 384 aa11.56□□□□□ -0.56
SKA1-204ENST00000488454 ZNF302Q9NR11 478 aa11.56□□□□□ -0.56
SKA1-204ENST00000488454 GABBR1Q9UBS5 961 aa11.56□□□□□ -0.56
SKA1-204ENST00000488454 ADGRG1Q9Y653 693 aa11.56□□□□□ -0.56
SKA1-204ENST00000488454 H3BRB1 525 aa11.55□□□□□ -0.56
SKA1-204ENST00000488454 LGALS2P05162 132 aa11.55□□□□□ -0.56
SKA1-204ENST00000488454 P4HBP07237 508 aaKnown RBP11.55□□□□□ -0.56
SKA1-204ENST00000488454 HOXD8P13378 290 aaPredicted RBP11.55□□□□□ -0.56
SKA1-204ENST00000488454 EN2P19622 333 aaPredicted RBP11.55□□□□□ -0.56
SKA1-204ENST00000488454 LONP1P36776 959 aaKnown RBP11.55□□□□□ -0.56
SKA1-204ENST00000488454 UBA7P41226 1012 aa11.55□□□□□ -0.56
SKA1-204ENST00000488454 SLC26A2P50443 739 aa11.55□□□□□ -0.56
SKA1-204ENST00000488454 PURAQ00577 322 aaKnown RBP11.55□□□□□ -0.56
SKA1-204ENST00000488454 CSPP1Q1MSJ5 1256 aa11.55□□□□□ -0.56
SKA1-204ENST00000488454 HAUS3Q68CZ6 603 aa11.55□□□□□ -0.56
SKA1-204ENST00000488454 CCSAPQ6IQ19 270 aaPredicted RBP11.55□□□□□ -0.56
SKA1-204ENST00000488454 PLPPR4Q7Z2D5 763 aa11.55□□□□□ -0.56
SKA1-204ENST00000488454 NEK9Q8TD19 979 aa11.55□□□□□ -0.56
SKA1-204ENST00000488454 LRCH3Q96II8 777 aa11.55□□□□□ -0.56
SKA1-204ENST00000488454 AK8Q96MA6 479 aa11.55□□□□□ -0.56
SKA1-204ENST00000488454 SENP6Q9GZR1 1112 aaPredicted RBP11.55□□□□□ -0.56
SKA1-204ENST00000488454 TUT1Q9H6E5 874 aaKnown RBP11.55□□□□□ -0.56
SKA1-204ENST00000488454 STARD7Q9NQZ5 370 aa11.55□□□□□ -0.56
SKA1-204ENST00000488454 NRBP2Q9NSY0 501 aa11.55□□□□□ -0.56
SKA1-204ENST00000488454 ERAP1Q9NZ08 941 aa11.55□□□□□ -0.56
SKA1-204ENST00000488454 RCOR1Q9UKL0 485 aa11.55□□□□□ -0.56
SKA1-204ENST00000488454 PHF24Q9UPV7 400 aa11.55□□□□□ -0.56
SKA1-204ENST00000488454 SRPRBQ9Y5M8 271 aaKnown RBP11.55□□□□□ -0.56
SKA1-204ENST00000488454 MORC2Q9Y6X9 1032 aaPredicted RBP11.55□□□□□ -0.56
SKA1-204ENST00000488454 HTTP42858 3142 aa11.54□□□□□ -0.56
SKA1-204ENST00000488454 EML1O00423 815 aa11.54□□□□□ -0.56
SKA1-204ENST00000488454 LGR5O75473 907 aa11.54□□□□□ -0.56
SKA1-204ENST00000488454 ZNF286BP0CG31 522 aa11.54□□□□□ -0.56
SKA1-204ENST00000488454 FECHP22830 423 aa11.54□□□□□ -0.56
SKA1-204ENST00000488454 TXLNAP40222 546 aa11.54□□□□□ -0.56
SKA1-204ENST00000488454 CCT6AP40227 531 aaKnown RBP11.54□□□□□ -0.56
SKA1-204ENST00000488454 QARSP47897 775 aaKnown RBP11.54□□□□□ -0.56
SKA1-204ENST00000488454 PSMC5P62195 406 aa11.54□□□□□ -0.56
SKA1-204ENST00000488454 IL17AQ16552 155 aa11.54□□□□□ -0.56
SKA1-204ENST00000488454 B3GNT9Q6UX72 402 aa11.54□□□□□ -0.56
SKA1-204ENST00000488454 NECAB2Q7Z6G3 386 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms