RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 CEP72Q9P209 647 aa5.68□□□□□ -1.5
SMC4-220ENST00000488017 PRKAG3Q9UGI9 489 aa5.68□□□□□ -1.5
SMC4-220ENST00000488017 GIT1Q9Y2X7 761 aa5.68□□□□□ -1.5
SMC4-220ENST00000488017 KRTAP23-1A1A580 65 aa5.67□□□□□ -1.5
SMC4-220ENST00000488017 FAM47E-STBD1D6RA91 191 aa5.67□□□□□ -1.5
SMC4-220ENST00000488017 CYP27B1O15528 508 aa5.67□□□□□ -1.5
SMC4-220ENST00000488017 HMGCRP04035 888 aa5.67□□□□□ -1.5
SMC4-220ENST00000488017 ZNF627Q7L945 461 aa5.67□□□□□ -1.5
SMC4-220ENST00000488017 TMPRSS6Q8IU80 811 aa5.67□□□□□ -1.5
SMC4-220ENST00000488017 NLGN4XQ8N0W4 816 aa5.67□□□□□ -1.5
SMC4-220ENST00000488017 THEMISQ8N1K5 641 aaPredicted RBP5.67□□□□□ -1.5
SMC4-220ENST00000488017 PARPBPQ9NWS1 579 aa5.67□□□□□ -1.5
SMC4-220ENST00000488017 PMS2P1A4D2B8 440 aa5.66□□□□□ -1.5
SMC4-220ENST00000488017 KRTAP29-1A8MX34 341 aaPredicted RBP5.66□□□□□ -1.5
SMC4-220ENST00000488017 RAMP2O60895 175 aa5.66□□□□□ -1.5
SMC4-220ENST00000488017 SOD2P04179 222 aa5.66□□□□□ -1.5
SMC4-220ENST00000488017 IL12RB1P42701 662 aa5.66□□□□□ -1.5
SMC4-220ENST00000488017 HSP90AA2PQ14568 343 aaPredicted RBP5.66□□□□□ -1.5
SMC4-220ENST00000488017 GRM7Q14831 915 aa5.66□□□□□ -1.5
SMC4-220ENST00000488017 EIF4HQ15056 248 aaKnown RBP5.66□□□□□ -1.5
SMC4-220ENST00000488017 BTBD8Q5XKL5 378 aa5.66□□□□□ -1.5
SMC4-220ENST00000488017 SGMS1Q86VZ5 419 aa5.66□□□□□ -1.5
SMC4-220ENST00000488017 IFNL3Q8IZI9 196 aa5.66□□□□□ -1.5
SMC4-220ENST00000488017 CLIP3Q96DZ5 547 aa5.66□□□□□ -1.5
SMC4-220ENST00000488017 ACBD3Q9H3P7 528 aa5.66□□□□□ -1.5
SMC4-220ENST00000488017 ARHGAP28Q9P2N2 729 aa5.66□□□□□ -1.5
SMC4-220ENST00000488017 MRVI1Q9Y6F6 885 aa5.66□□□□□ -1.5
SMC4-220ENST00000488017 SSBP05455 408 aaKnown RBP eCLIP5.65□□□□□ -1.5
SMC4-220ENST00000488017 KCNQ1P51787 676 aa5.65□□□□□ -1.5
SMC4-220ENST00000488017 STILQ15468 1287 aa5.65□□□□□ -1.5
SMC4-220ENST00000488017 TRIM68Q6AZZ1 485 aa5.65□□□□□ -1.5
SMC4-220ENST00000488017 STYK1Q6J9G0 422 aa5.65□□□□□ -1.5
SMC4-220ENST00000488017 KCNT2Q6UVM3 1135 aa5.65□□□□□ -1.5
SMC4-220ENST00000488017 LARP4Q71RC2 724 aaKnown RBP eCLIP5.65□□□□□ -1.5
SMC4-220ENST00000488017 SGSM3Q96HU1 749 aa5.65□□□□□ -1.5
SMC4-220ENST00000488017 CD244Q9BZW8 370 aa5.65□□□□□ -1.5
SMC4-220ENST00000488017 OR10A2Q9H208 303 aa5.65□□□□□ -1.5
SMC4-220ENST00000488017 REXO2Q9Y3B8 237 aaKnown RBP5.65□□□□□ -1.5
SMC4-220ENST00000488017 GJB6O95452 261 aa5.64□□□□□ -1.51
SMC4-220ENST00000488017 IL13RA1P78552 427 aa5.64□□□□□ -1.51
SMC4-220ENST00000488017 SH3RF2Q8TEC5 729 aa5.64□□□□□ -1.51
SMC4-220ENST00000488017 WNK4Q96J92 1243 aa5.64□□□□□ -1.51
SMC4-220ENST00000488017 KIAA1683Q9H0B3 1180 aa5.64□□□□□ -1.51
SMC4-220ENST00000488017 CCSER2Q9H7U1 834 aa5.64□□□□□ -1.51
SMC4-220ENST00000488017 GALNT8Q9NY28 637 aa5.64□□□□□ -1.51
SMC4-220ENST00000488017 FOXN1O15353 648 aa5.63□□□□□ -1.51
SMC4-220ENST00000488017 FGFR1P11362 822 aa5.63□□□□□ -1.51
SMC4-220ENST00000488017 PTPN1P18031 435 aaKnown RBP5.63□□□□□ -1.51
SMC4-220ENST00000488017 PTGS1P23219 599 aa5.63□□□□□ -1.51
SMC4-220ENST00000488017 GJA4P35212 333 aa5.63□□□□□ -1.51
SMC4-220ENST00000488017 PCOLCEQ15113 449 aa5.63□□□□□ -1.51
SMC4-220ENST00000488017 NTRK3Q16288 839 aa5.63□□□□□ -1.51
SMC4-220ENST00000488017 Q6ZPA2 131 aa5.63□□□□□ -1.51
SMC4-220ENST00000488017 DPH6Q7L8W6 267 aa5.63□□□□□ -1.51
SMC4-220ENST00000488017 VPS37DQ86XT2 251 aa5.63□□□□□ -1.51
SMC4-220ENST00000488017 GPR135Q8IZ08 494 aa5.63□□□□□ -1.51
SMC4-220ENST00000488017 D2HGDHQ8N465 521 aa5.63□□□□□ -1.51
SMC4-220ENST00000488017 ALG1Q9BT22 464 aa5.63□□□□□ -1.51
SMC4-220ENST00000488017 AARSD1Q9BTE6 412 aaKnown RBP5.63□□□□□ -1.51
SMC4-220ENST00000488017 IPPKQ9H8X2 491 aa5.63□□□□□ -1.51
SMC4-220ENST00000488017 CAPN10Q9HC96 672 aa5.63□□□□□ -1.51
SMC4-220ENST00000488017 INCENPQ9NQS7 918 aa5.63□□□□□ -1.51
SMC4-220ENST00000488017 SRPK3Q9UPE1 567 aa5.63□□□□□ -1.51
SMC4-220ENST00000488017 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.62□□□□□ -1.51
SMC4-220ENST00000488017 TMEM191CA6NGB0 347 aa5.62□□□□□ -1.51
SMC4-220ENST00000488017 FAM90A27PA6NNH2 459 aa5.62□□□□□ -1.51
SMC4-220ENST00000488017 CAPN14A8MX76 684 aa5.62□□□□□ -1.51
SMC4-220ENST00000488017 KRT4P19013 534 aa5.62□□□□□ -1.51
SMC4-220ENST00000488017 FBLP22087 321 aaKnown RBP5.62□□□□□ -1.51
SMC4-220ENST00000488017 MEOX1P50221 254 aa5.62□□□□□ -1.51
SMC4-220ENST00000488017 KRTAP10-11P60412 298 aa5.62□□□□□ -1.51
SMC4-220ENST00000488017 TMCO4Q5TGY1 634 aa5.62□□□□□ -1.51
SMC4-220ENST00000488017 MPHOSPH9Q99550 1183 aa5.62□□□□□ -1.51
SMC4-220ENST00000488017 BTBD2Q9BX70 525 aa5.62□□□□□ -1.51
SMC4-220ENST00000488017 SLC2A4RGQ9NR83 387 aa5.62□□□□□ -1.51
SMC4-220ENST00000488017 RIC8BQ9NVN3 520 aa5.62□□□□□ -1.51
SMC4-220ENST00000488017 TCRBV5S4A2TA0A5A2 114 aa5.61□□□□□ -1.51
SMC4-220ENST00000488017 IQCA1LA6NCM1 817 aa5.61□□□□□ -1.51
SMC4-220ENST00000488017 PRODHO43272 600 aa5.61□□□□□ -1.51
SMC4-220ENST00000488017 SLC26A4O43511 780 aa5.61□□□□□ -1.51
SMC4-220ENST00000488017 ADCY8P40145 1251 aa5.61□□□□□ -1.51
SMC4-220ENST00000488017 MRE11P49959 708 aa5.61□□□□□ -1.51
SMC4-220ENST00000488017 COL10A1Q03692 680 aa5.61□□□□□ -1.51
SMC4-220ENST00000488017 HGFACQ04756 655 aa5.61□□□□□ -1.51
SMC4-220ENST00000488017 GPR19Q15760 415 aa5.61□□□□□ -1.51
SMC4-220ENST00000488017 TTPALQ9BTX7 342 aa5.61□□□□□ -1.51
SMC4-220ENST00000488017 A0A0G2JNJ9 132 aa5.6□□□□□ -1.51
SMC4-220ENST00000488017 PABPC1P11940 636 aaKnown RBP5.6□□□□□ -1.51
SMC4-220ENST00000488017 PDE6AP16499 860 aa5.6□□□□□ -1.51
SMC4-220ENST00000488017 AOAHP28039 575 aa5.6□□□□□ -1.51
SMC4-220ENST00000488017 ETFBP38117 255 aa5.6□□□□□ -1.51
SMC4-220ENST00000488017 HERVK_113P62684 666 aa5.6□□□□□ -1.51
SMC4-220ENST00000488017 CRHR2Q13324 411 aa5.6□□□□□ -1.51
SMC4-220ENST00000488017 RRP1BQ14684 758 aaKnown RBP5.6□□□□□ -1.51
SMC4-220ENST00000488017 CCDC142Q17RM4 750 aa5.6□□□□□ -1.51
SMC4-220ENST00000488017 FIGNQ5HY92 759 aa5.6□□□□□ -1.51
SMC4-220ENST00000488017 SPTY2D1Q68D10 685 aaPredicted RBP5.6□□□□□ -1.51
SMC4-220ENST00000488017 TMEM200BQ69YZ2 307 aa5.6□□□□□ -1.51
SMC4-220ENST00000488017 OTOP2Q7RTS6 562 aa5.6□□□□□ -1.51
SMC4-220ENST00000488017 FILIP1Q7Z7B0 1213 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms