RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 SMAD3P84022 425 aaKnown RBP7.5□□□□□ -1.21
USP48-209ENST00000487880 DLX2Q07687 328 aaPredicted RBP7.5□□□□□ -1.21
USP48-209ENST00000487880 SMAD2Q15796 467 aaKnown RBP7.5□□□□□ -1.21
USP48-209ENST00000487880 KCNA10Q16322 511 aa7.5□□□□□ -1.21
USP48-209ENST00000487880 CNKSR3Q6P9H4 555 aa7.5□□□□□ -1.21
USP48-209ENST00000487880 RTN4RL1Q86UN2 441 aaPredicted RBP7.5□□□□□ -1.21
USP48-209ENST00000487880 TTLL6Q8N841 843 aa7.5□□□□□ -1.21
USP48-209ENST00000487880 DACT3Q96B18 629 aaPredicted RBP7.5□□□□□ -1.21
USP48-209ENST00000487880 FOXRED1Q96CU9 486 aaPredicted RBP7.5□□□□□ -1.21
USP48-209ENST00000487880 SCYL1Q96KG9 808 aa7.5□□□□□ -1.21
USP48-209ENST00000487880 ZMAT4Q9H898 229 aa7.5□□□□□ -1.21
USP48-209ENST00000487880 DLL4Q9NR61 685 aa7.5□□□□□ -1.21
USP48-209ENST00000487880 ATP8A1Q9Y2Q0 1164 aa7.5□□□□□ -1.21
USP48-209ENST00000487880 ASB1Q9Y576 335 aa7.5□□□□□ -1.21
USP48-209ENST00000487880 PMF1-BGLAPU3KQ54 211 aa7.5□□□□□ -1.21
USP48-209ENST00000487880 GOLGA6L22H0YM25 854 aa7.49□□□□□ -1.21
USP48-209ENST00000487880 C8AP07357 584 aa7.49□□□□□ -1.21
USP48-209ENST00000487880 PTGS1P23219 599 aa7.49□□□□□ -1.21
USP48-209ENST00000487880 MC4RP32245 332 aa7.49□□□□□ -1.21
USP48-209ENST00000487880 PHC1P78364 1004 aa7.49□□□□□ -1.21
USP48-209ENST00000487880 STAT4Q14765 748 aa7.49□□□□□ -1.21
USP48-209ENST00000487880 EPHA7Q15375 998 aa7.49□□□□□ -1.21
USP48-209ENST00000487880 SKIDA1Q1XH10 827 aa7.49□□□□□ -1.21
USP48-209ENST00000487880 VWA3BQ502W6 1294 aa7.49□□□□□ -1.21
USP48-209ENST00000487880 GPR158Q5T848 1215 aa7.49□□□□□ -1.21
USP48-209ENST00000487880 LHFPL2Q6ZUX7 228 aa7.49□□□□□ -1.21
USP48-209ENST00000487880 SAPCD2Q86UD0 394 aa7.49□□□□□ -1.21
USP48-209ENST00000487880 DDX42Q86XP3 938 aaKnown RBP eCLIP7.49□□□□□ -1.21
USP48-209ENST00000487880 ZBTB8AQ96BR9 441 aa7.49□□□□□ -1.21
USP48-209ENST00000487880 PWWP2AQ96N64 755 aa7.49□□□□□ -1.21
USP48-209ENST00000487880 GBP4Q96PP9 640 aa7.49□□□□□ -1.21
USP48-209ENST00000487880 SLC39A2Q9NP94 309 aa7.49□□□□□ -1.21
USP48-209ENST00000487880 ARHGAP28Q9P2N2 729 aa7.49□□□□□ -1.21
USP48-209ENST00000487880 NPIPB6E9PJ23 425 aa7.48□□□□□ -1.21
USP48-209ENST00000487880 RFXAPO00287 272 aa7.48□□□□□ -1.21
USP48-209ENST00000487880 GPR39O43194 453 aa7.48□□□□□ -1.21
USP48-209ENST00000487880 CPEP16870 476 aa7.48□□□□□ -1.21
USP48-209ENST00000487880 NCLP19338 710 aaKnown RBP7.48□□□□□ -1.21
USP48-209ENST00000487880 LRRC32Q14392 662 aa7.48□□□□□ -1.21
USP48-209ENST00000487880 PKN1Q16512 942 aa7.48□□□□□ -1.21
USP48-209ENST00000487880 ATP13A4Q4VNC1 1196 aa7.48□□□□□ -1.21
USP48-209ENST00000487880 ZNF385BQ569K4 471 aa7.48□□□□□ -1.21
USP48-209ENST00000487880 PRR31Q5SQ13 230 aa7.48□□□□□ -1.21
USP48-209ENST00000487880 STK32CQ86UX6 486 aa7.48□□□□□ -1.21
USP48-209ENST00000487880 C11orf74Q86VG3 221 aa7.48□□□□□ -1.21
USP48-209ENST00000487880 CLIC6Q96NY7 704 aa7.48□□□□□ -1.21
USP48-209ENST00000487880 INCENPQ9NQS7 918 aa7.48□□□□□ -1.21
USP48-209ENST00000487880 TOMM22Q9NS69 142 aa7.48□□□□□ -1.21
USP48-209ENST00000487880 SPATA6Q9NWH7 488 aaPredicted RBP7.48□□□□□ -1.21
USP48-209ENST00000487880 MCM8Q9UJA3 840 aa7.48□□□□□ -1.21
USP48-209ENST00000487880 SMAD4Q13485 552 aaKnown RBP7.47□□□□□ -1.21
USP48-209ENST00000487880 TERF2Q15554 542 aa7.47□□□□□ -1.21
USP48-209ENST00000487880 ZNF124Q15973 351 aa7.47□□□□□ -1.21
USP48-209ENST00000487880 SLC5A5Q92911 643 aa7.47□□□□□ -1.21
USP48-209ENST00000487880 WRNIP1Q96S55 665 aa7.47□□□□□ -1.21
USP48-209ENST00000487880 AMNQ9BXJ7 453 aa7.47□□□□□ -1.21
USP48-209ENST00000487880 NOP58Q9Y2X3 529 aaKnown RBP7.47□□□□□ -1.21
USP48-209ENST00000487880 IL18BPO95998 194 aa7.46□□□□□ -1.22
USP48-209ENST00000487880 CDKN1CP49918 316 aaPredicted RBP7.46□□□□□ -1.22
USP48-209ENST00000487880 NME9Q86XW9 330 aa7.46□□□□□ -1.22
USP48-209ENST00000487880 PASD1Q8IV76 773 aa7.46□□□□□ -1.22
USP48-209ENST00000487880 ZZZ3Q8IYH5 903 aa7.46□□□□□ -1.22
USP48-209ENST00000487880 HIPK4Q8NE63 616 aa7.46□□□□□ -1.22
USP48-209ENST00000487880 ZSWIM3Q96MP5 696 aa7.46□□□□□ -1.22
USP48-209ENST00000487880 FOXB1Q99853 325 aa7.46□□□□□ -1.22
USP48-209ENST00000487880 KCND1Q9NSA2 647 aa7.46□□□□□ -1.22
USP48-209ENST00000487880 GALNT8Q9NY28 637 aa7.46□□□□□ -1.22
USP48-209ENST00000487880 ARHGAP20Q9P2F6 1191 aa7.46□□□□□ -1.22
USP48-209ENST00000487880 ZFP69BQ9UJL9 534 aa7.46□□□□□ -1.22
USP48-209ENST00000487880 PHLDB1Q86UU1 1377 aa7.46□□□□□ -1.22
USP48-209ENST00000487880 PRAMEF22A3QJZ6 481 aa7.45□□□□□ -1.22
USP48-209ENST00000487880 SH3D21A4FU49 640 aa7.45□□□□□ -1.22
USP48-209ENST00000487880 FFAR3O14843 346 aa7.45□□□□□ -1.22
USP48-209ENST00000487880 CHGBP05060 677 aa7.45□□□□□ -1.22
USP48-209ENST00000487880 COL6A1P12109 1028 aa7.45□□□□□ -1.22
USP48-209ENST00000487880 CDK11BP21127 795 aaKnown RBP7.45□□□□□ -1.22
USP48-209ENST00000487880 STILQ15468 1287 aa7.45□□□□□ -1.22
USP48-209ENST00000487880 DDB1Q16531 1140 aa7.45□□□□□ -1.22
USP48-209ENST00000487880 PRAMEF18Q5VWM3 479 aa7.45□□□□□ -1.22
USP48-209ENST00000487880 RNF219Q5W0B1 726 aaPredicted RBP7.45□□□□□ -1.22
USP48-209ENST00000487880 RPUSD2Q8IZ73 545 aaKnown RBP7.45□□□□□ -1.22
USP48-209ENST00000487880 ZNF610Q8N9Z0 462 aa7.45□□□□□ -1.22
USP48-209ENST00000487880 ATL2Q8NHH9 583 aa7.45□□□□□ -1.22
USP48-209ENST00000487880 WDR66Q8TBY9 1149 aa7.45□□□□□ -1.22
USP48-209ENST00000487880 UCKL1Q9NWZ5 548 aa7.45□□□□□ -1.22
USP48-209ENST00000487880 PRLP01236 227 aa7.44□□□□□ -1.22
USP48-209ENST00000487880 ZNF28P17035 718 aa7.44□□□□□ -1.22
USP48-209ENST00000487880 CD40P25942 277 aa7.44□□□□□ -1.22
USP48-209ENST00000487880 RPL13P26373 211 aaKnown RBP7.44□□□□□ -1.22
USP48-209ENST00000487880 ALDH6A1Q02252 535 aaKnown RBP7.44□□□□□ -1.22
USP48-209ENST00000487880 ADCY1Q08828 1119 aa7.44□□□□□ -1.22
USP48-209ENST00000487880 PHF19Q5T6S3 580 aa7.44□□□□□ -1.22
USP48-209ENST00000487880 BROXQ5VW32 411 aa7.44□□□□□ -1.22
USP48-209ENST00000487880 SPATS2Q86XZ4 545 aaKnown RBP7.44□□□□□ -1.22
USP48-209ENST00000487880 PRPF38AQ8NAV1 312 aaKnown RBP7.44□□□□□ -1.22
USP48-209ENST00000487880 ZNF526Q8TF50 670 aaPredicted RBP7.44□□□□□ -1.22
USP48-209ENST00000487880 E2F7Q96AV8 911 aa7.44□□□□□ -1.22
USP48-209ENST00000487880 BTBD2Q9BX70 525 aa7.44□□□□□ -1.22
USP48-209ENST00000487880 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.43□□□□□ -1.22
USP48-209ENST00000487880 ULK1O75385 1050 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms