RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 LRCH2Q5VUJ6 765 aa7.89□□□□□ -1.15
LIMD1-204ENST00000474665 ABHD15Q6UXT9 468 aa7.89□□□□□ -1.15
LIMD1-204ENST00000474665 HFE2Q6ZVN8 426 aa7.89□□□□□ -1.15
LIMD1-204ENST00000474665 RNF180Q86T96 592 aa7.89□□□□□ -1.15
LIMD1-204ENST00000474665 SLC43A3Q8NBI5 491 aa7.89□□□□□ -1.15
LIMD1-204ENST00000474665 FAM20AQ96MK3 541 aa7.89□□□□□ -1.15
LIMD1-204ENST00000474665 CTAGE1Q96RT6 745 aa7.89□□□□□ -1.15
LIMD1-204ENST00000474665 USP28Q96RU2 1077 aa7.89□□□□□ -1.15
LIMD1-204ENST00000474665 MLXIPQ9HAP2 919 aa7.89□□□□□ -1.15
LIMD1-204ENST00000474665 TBC1D22BQ9NU19 505 aa7.89□□□□□ -1.15
LIMD1-204ENST00000474665 TMEM39AQ9NV64 488 aa7.89□□□□□ -1.15
LIMD1-204ENST00000474665 MTCH2Q9Y6C9 303 aa7.89□□□□□ -1.15
LIMD1-204ENST00000474665 CHD9Q3L8U1 2897 aa7.89□□□□□ -1.15
LIMD1-204ENST00000474665 CFAP54Q96N23 3096 aa7.88□□□□□ -1.15
LIMD1-204ENST00000474665 ELP1O95163 1332 aa7.88□□□□□ -1.15
LIMD1-204ENST00000474665 ZNF862O60290 1169 aa7.88□□□□□ -1.15
LIMD1-204ENST00000474665 PQBP1O60828 265 aaKnown RBP7.88□□□□□ -1.15
LIMD1-204ENST00000474665 GAS7O60861 476 aa7.88□□□□□ -1.15
LIMD1-204ENST00000474665 F2P00734 622 aa7.88□□□□□ -1.15
LIMD1-204ENST00000474665 MYL3P08590 195 aa7.88□□□□□ -1.15
LIMD1-204ENST00000474665 OR52Z1P0C646 297 aa7.88□□□□□ -1.15
LIMD1-204ENST00000474665 SUPT20HL2P0C7V6 817 aa7.88□□□□□ -1.15
LIMD1-204ENST00000474665 ACRP10323 421 aa7.88□□□□□ -1.15
LIMD1-204ENST00000474665 MYOGP15173 224 aa7.88□□□□□ -1.15
LIMD1-204ENST00000474665 SSTR3P32745 418 aaPredicted RBP7.88□□□□□ -1.15
LIMD1-204ENST00000474665 TCF7P36402 384 aaPredicted RBP7.88□□□□□ -1.15
LIMD1-204ENST00000474665 ANP32AP39687 249 aaKnown RBP7.88□□□□□ -1.15
LIMD1-204ENST00000474665 TXKP42681 527 aa7.88□□□□□ -1.15
LIMD1-204ENST00000474665 CPT1AP50416 773 aa7.88□□□□□ -1.15
LIMD1-204ENST00000474665 CDK7P50613 346 aa7.88□□□□□ -1.15
LIMD1-204ENST00000474665 RABGGTBP53611 331 aa7.88□□□□□ -1.15
LIMD1-204ENST00000474665 ATP2C1P98194 919 aaPredicted RBP7.88□□□□□ -1.15
LIMD1-204ENST00000474665 GRIN1Q05586 938 aa7.88□□□□□ -1.15
LIMD1-204ENST00000474665 ORC2Q13416 577 aaPredicted RBP7.88□□□□□ -1.15
LIMD1-204ENST00000474665 RAB30Q15771 203 aa7.88□□□□□ -1.15
LIMD1-204ENST00000474665 UGCGQ16739 394 aa7.88□□□□□ -1.15
LIMD1-204ENST00000474665 DGKDQ16760 1214 aa7.88□□□□□ -1.15
LIMD1-204ENST00000474665 C1orf53Q5VUE5 145 aa7.88□□□□□ -1.15
LIMD1-204ENST00000474665 ZNF746Q6NUN9 644 aaPredicted RBP7.88□□□□□ -1.15
LIMD1-204ENST00000474665 ZNF365Q70YC5 407 aa7.88□□□□□ -1.15
LIMD1-204ENST00000474665 ERMP1Q7Z2K6 904 aa7.88□□□□□ -1.15
LIMD1-204ENST00000474665 CCDC60Q8IWA6 550 aaPredicted RBP7.88□□□□□ -1.15
LIMD1-204ENST00000474665 PCSK9Q8NBP7 692 aaKnown RBP7.88□□□□□ -1.15
LIMD1-204ENST00000474665 GIMAP8Q8ND71 665 aaPredicted RBP7.88□□□□□ -1.15
LIMD1-204ENST00000474665 SEPT1Q8WYJ6 367 aa7.88□□□□□ -1.15
LIMD1-204ENST00000474665 SDF4Q9BRK5 362 aa7.88□□□□□ -1.15
LIMD1-204ENST00000474665 RNPEPQ9H4A4 650 aa7.88□□□□□ -1.15
LIMD1-204ENST00000474665 TTC12Q9H892 705 aaPredicted RBP7.88□□□□□ -1.15
LIMD1-204ENST00000474665 FAM86C1Q9NVL1 165 aa7.88□□□□□ -1.15
LIMD1-204ENST00000474665 WRAP73Q9P2S5 460 aaPredicted RBP7.88□□□□□ -1.15
LIMD1-204ENST00000474665 TFIP11Q9UBB9 837 aaKnown RBP7.88□□□□□ -1.15
LIMD1-204ENST00000474665 NOL7Q9UMY1 257 aaKnown RBP7.88□□□□□ -1.15
LIMD1-204ENST00000474665 USP34Q70CQ2 3546 aa7.87□□□□□ -1.15
LIMD1-204ENST00000474665 EMSYQ7Z589 1322 aa7.87□□□□□ -1.15
LIMD1-204ENST00000474665 MOXD2PA6NHM9 499 aa7.87□□□□□ -1.15
LIMD1-204ENST00000474665 POTEMA6NI47 508 aa7.87□□□□□ -1.15
LIMD1-204ENST00000474665 PP2D1A8MPX8 630 aa7.87□□□□□ -1.15
LIMD1-204ENST00000474665 ZBTB42B2RXF5 422 aa7.87□□□□□ -1.15
LIMD1-204ENST00000474665 ZBTB39O15060 712 aa7.87□□□□□ -1.15
LIMD1-204ENST00000474665 CHMP2AO43633 222 aa7.87□□□□□ -1.15
LIMD1-204ENST00000474665 SPATA31C1P0DKV0 1188 aa7.87□□□□□ -1.15
LIMD1-204ENST00000474665 HOXC8P31273 242 aa7.87□□□□□ -1.15
LIMD1-204ENST00000474665 NASPP49321 788 aaPredicted RBP7.87□□□□□ -1.15
LIMD1-204ENST00000474665 PSEN2P49810 448 aa7.87□□□□□ -1.15
LIMD1-204ENST00000474665 KRT76Q01546 638 aa7.87□□□□□ -1.15
LIMD1-204ENST00000474665 CEBPZQ03701 1054 aaKnown RBP7.87□□□□□ -1.15
LIMD1-204ENST00000474665 DNM1Q05193 864 aaKnown RBP7.87□□□□□ -1.15
LIMD1-204ENST00000474665 SF3A1Q15459 793 aaKnown RBP7.87□□□□□ -1.15
LIMD1-204ENST00000474665 NBPF20Q3BBV1 942 aa7.87□□□□□ -1.15
LIMD1-204ENST00000474665 FOXD4L6Q3SYB3 417 aaPredicted RBP7.87□□□□□ -1.15
LIMD1-204ENST00000474665 IER5LQ5T953 404 aa7.87□□□□□ -1.15
LIMD1-204ENST00000474665 UTP14CQ5TAP6 766 aaKnown RBP7.87□□□□□ -1.15
LIMD1-204ENST00000474665 FOXD4L3Q6VB84 417 aaPredicted RBP7.87□□□□□ -1.15
LIMD1-204ENST00000474665 FAM178BQ8IXR5 827 aa7.87□□□□□ -1.15
LIMD1-204ENST00000474665 IGSF22Q8N9C0 903 aa7.87□□□□□ -1.15
LIMD1-204ENST00000474665 COL26A1Q96A83 441 aa7.87□□□□□ -1.15
LIMD1-204ENST00000474665 NAP1L4Q99733 375 aaKnown RBP7.87□□□□□ -1.15
LIMD1-204ENST00000474665 HSD17B14Q9BPX1 270 aa7.87□□□□□ -1.15
LIMD1-204ENST00000474665 MTG1Q9BT17 334 aaPredicted RBP7.87□□□□□ -1.15
LIMD1-204ENST00000474665 MMTAG2Q9BU76 263 aaKnown RBP7.87□□□□□ -1.15
LIMD1-204ENST00000474665 TEKT3Q9BXF9 490 aa7.87□□□□□ -1.15
LIMD1-204ENST00000474665 ZSCAN16Q9H4T2 348 aaPredicted RBP7.87□□□□□ -1.15
LIMD1-204ENST00000474665 CERS4Q9HA82 394 aa7.87□□□□□ -1.15
LIMD1-204ENST00000474665 SPC25Q9HBM1 224 aa7.87□□□□□ -1.15
LIMD1-204ENST00000474665 DISC1Q9NRI5 854 aa7.87□□□□□ -1.15
LIMD1-204ENST00000474665 RGL1Q9NZL6 768 aa7.87□□□□□ -1.15
LIMD1-204ENST00000474665 PCDHA12Q9UN75 941 aa7.87□□□□□ -1.15
LIMD1-204ENST00000474665 PCDHA10Q9Y5I2 948 aa7.87□□□□□ -1.15
LIMD1-204ENST00000474665 MAFBQ9Y5Q3 323 aaPredicted RBP7.87□□□□□ -1.15
LIMD1-204ENST00000474665 CACNA1BQ00975 2339 aa7.87□□□□□ -1.15
LIMD1-204ENST00000474665 LOXHD1Q8IVV2 1947 aa7.87□□□□□ -1.15
LIMD1-204ENST00000474665 SPTBN4Q9H254 2564 aa7.86□□□□□ -1.15
LIMD1-204ENST00000474665 PRRC2BQ5JSZ5 2229 aaKnown RBP7.86□□□□□ -1.15
LIMD1-204ENST00000474665 IGSF9BQ9UPX0 1349 aa7.86□□□□□ -1.15
LIMD1-204ENST00000474665 A0A087WWV3 80 aa7.86□□□□□ -1.15
LIMD1-204ENST00000474665 TMEM150BA6NC51 233 aa7.86□□□□□ -1.15
LIMD1-204ENST00000474665 WDR64B1ANS9 1081 aa7.86□□□□□ -1.15
LIMD1-204ENST00000474665 H3BRB1 525 aa7.86□□□□□ -1.15
LIMD1-204ENST00000474665 NOP56O00567 594 aaKnown RBP7.86□□□□□ -1.15
LIMD1-204ENST00000474665 KPNA6O60684 536 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms