RNA–Protein interactions for RNA: ENST00000474421.1

PDLIM4-206, Transcript of PDZ and LIM domain 4, humanhuman

TSL 3

Gene PDLIM4, Length 1,084 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-206ENST00000474421 PDIA3P30101 505 aaKnown RBP23.13■■□□□ 1.29
PDLIM4-206ENST00000474421 MIS18BP1Q6P0N0 1132 aa23.13■■□□□ 1.29
PDLIM4-206ENST00000474421 ABHD15Q6UXT9 468 aa23.13■■□□□ 1.29
PDLIM4-206ENST00000474421 NME8Q8N427 588 aa23.13■■□□□ 1.29
PDLIM4-206ENST00000474421 HLA-CQ95604 372 aa23.13■■□□□ 1.29
PDLIM4-206ENST00000474421 C17orf80Q9BSJ5 609 aa23.13■■□□□ 1.29
PDLIM4-206ENST00000474421 ZNF577Q9BSK1 485 aa23.13■■□□□ 1.29
PDLIM4-206ENST00000474421 ZSWIM6Q9HCJ5 1215 aa23.13■■□□□ 1.29
PDLIM4-206ENST00000474421 MYH9P35579 1960 aaKnown RBP23.12■■□□□ 1.29
PDLIM4-206ENST00000474421 DDX39AO00148 427 aaKnown RBP23.12■■□□□ 1.29
PDLIM4-206ENST00000474421 HBP1O60381 514 aa23.12■■□□□ 1.29
PDLIM4-206ENST00000474421 CCNE2O96020 404 aa23.12■■□□□ 1.29
PDLIM4-206ENST00000474421 PTPROQ16827 1216 aa23.12■■□□□ 1.29
PDLIM4-206ENST00000474421 TRIM22Q8IYM9 498 aa23.12■■□□□ 1.29
PDLIM4-206ENST00000474421 ATP8B4Q8TF62 1192 aa23.12■■□□□ 1.29
PDLIM4-206ENST00000474421 IL17RAQ96F46 866 aa23.12■■□□□ 1.29
PDLIM4-206ENST00000474421 UHRF1Q96T88 793 aaPredicted RBP23.12■■□□□ 1.29
PDLIM4-206ENST00000474421 TM6SF1Q9BZW5 370 aa23.12■■□□□ 1.29
PDLIM4-206ENST00000474421 SH3GLB2Q9NR46 395 aa23.12■■□□□ 1.29
PDLIM4-206ENST00000474421 TRPV2Q9Y5S1 764 aa23.12■■□□□ 1.29
PDLIM4-206ENST00000474421 SMIM35A0A1B0GVV1 85 aa23.11■■□□□ 1.29
PDLIM4-206ENST00000474421 DHX15O43143 795 aaKnown RBP23.11■■□□□ 1.29
PDLIM4-206ENST00000474421 CCT2P78371 535 aaKnown RBP23.11■■□□□ 1.29
PDLIM4-206ENST00000474421 TFF2Q03403 129 aa23.11■■□□□ 1.29
PDLIM4-206ENST00000474421 EPC2Q52LR7 807 aa23.11■■□□□ 1.29
PDLIM4-206ENST00000474421 ZNF746Q6NUN9 644 aaPredicted RBP23.11■■□□□ 1.29
PDLIM4-206ENST00000474421 FAM43BQ6ZT52 329 aaPredicted RBP23.11■■□□□ 1.29
PDLIM4-206ENST00000474421 SMAP1Q8IYB5 467 aaPredicted RBP23.11■■□□□ 1.29
PDLIM4-206ENST00000474421 FTHL17Q9BXU8 183 aa23.11■■□□□ 1.29
PDLIM4-206ENST00000474421 ZNF302Q9NR11 478 aa23.11■■□□□ 1.29
PDLIM4-206ENST00000474421 COL1A2P08123 1366 aa23.11■■□□□ 1.29
PDLIM4-206ENST00000474421 TTC3P53804 2025 aa23.11■■□□□ 1.29
PDLIM4-206ENST00000474421 ENPP3O14638 875 aa23.1■■□□□ 1.29
PDLIM4-206ENST00000474421 BMP1P13497 986 aa23.1■■□□□ 1.29
PDLIM4-206ENST00000474421 CIITAP33076 1130 aa23.1■■□□□ 1.29
PDLIM4-206ENST00000474421 KRT76Q01546 638 aa23.1■■□□□ 1.29
PDLIM4-206ENST00000474421 PDXDC2PQ6P474 469 aa23.1■■□□□ 1.29
PDLIM4-206ENST00000474421 MTHFD1LQ6UB35 978 aa23.1■■□□□ 1.29
PDLIM4-206ENST00000474421 TRAPPC12Q8WVT3 735 aa23.1■■□□□ 1.29
PDLIM4-206ENST00000474421 ZNF274Q96GC6 653 aaPredicted RBP23.1■■□□□ 1.29
PDLIM4-206ENST00000474421 RALGAPA2Q2PPJ7 1873 aa23.1■■□□□ 1.29
PDLIM4-206ENST00000474421 NLRC5Q86WI3 1866 aa23.1■■□□□ 1.29
PDLIM4-206ENST00000474421 TCF20Q9UGU0 1960 aaKnown RBP23.1■■□□□ 1.29
PDLIM4-206ENST00000474421 LOXHD1Q8IVV2 1947 aa23.1■■□□□ 1.29
PDLIM4-206ENST00000474421 RBAK-RBAKDNI3L0D1 243 aa23.09■■□□□ 1.29
PDLIM4-206ENST00000474421 TOB2Q14106 344 aaPredicted RBP23.09■■□□□ 1.29
PDLIM4-206ENST00000474421 PRR16Q569H4 304 aa23.09■■□□□ 1.29
PDLIM4-206ENST00000474421 ZNF484Q5JVG2 852 aa23.09■■□□□ 1.29
PDLIM4-206ENST00000474421 CPLX2Q6PUV4 134 aaKnown RBP23.09■■□□□ 1.29
PDLIM4-206ENST00000474421 CCDC60Q8IWA6 550 aaPredicted RBP23.09■■□□□ 1.29
PDLIM4-206ENST00000474421 TMEM192Q8IY95 271 aa23.09■■□□□ 1.29
PDLIM4-206ENST00000474421 FIBCD1Q8N539 461 aa23.09■■□□□ 1.29
PDLIM4-206ENST00000474421 ZBTB10Q96DT7 871 aa23.09■■□□□ 1.29
PDLIM4-206ENST00000474421 CELF4Q9BZC1 486 aaKnown RBP23.09■■□□□ 1.29
PDLIM4-206ENST00000474421 C22orf23Q9BZE7 217 aa23.09■■□□□ 1.29
PDLIM4-206ENST00000474421 NCOA5Q9HCD5 579 aaKnown RBP23.09■■□□□ 1.29
PDLIM4-206ENST00000474421 VPS54Q9P1Q0 977 aa23.09■■□□□ 1.29
PDLIM4-206ENST00000474421 RWDD3Q9Y3V2 267 aa23.09■■□□□ 1.29
PDLIM4-206ENST00000474421 KDM3AQ9Y4C1 1321 aa23.08■■□□□ 1.29
PDLIM4-206ENST00000474421 BRWD1Q9NSI6 2320 aa23.08■■□□□ 1.29
PDLIM4-206ENST00000474421 CPLX1O14810 134 aa23.08■■□□□ 1.29
PDLIM4-206ENST00000474421 KLRC1P26715 233 aa23.08■■□□□ 1.29
PDLIM4-206ENST00000474421 CD52P31358 61 aa23.08■■□□□ 1.29
PDLIM4-206ENST00000474421 USP11P51784 963 aa23.08■■□□□ 1.29
PDLIM4-206ENST00000474421 NLRP5P59047 1200 aa23.08■■□□□ 1.29
PDLIM4-206ENST00000474421 SSRP1Q08945 709 aaKnown RBP23.08■■□□□ 1.29
PDLIM4-206ENST00000474421 SWSAP1Q6NVH7 229 aa23.08■■□□□ 1.29
PDLIM4-206ENST00000474421 CKAP2LQ8IYA6 745 aa23.08■■□□□ 1.29
PDLIM4-206ENST00000474421 FAM177A1Q8N128 213 aaPredicted RBP23.08■■□□□ 1.29
PDLIM4-206ENST00000474421 MRPL38Q96DV4 380 aaKnown RBP23.08■■□□□ 1.29
PDLIM4-206ENST00000474421 AGO3Q9H9G7 860 aaKnown RBP23.08■■□□□ 1.29
PDLIM4-206ENST00000474421 PCDHA10Q9Y5I2 948 aa23.08■■□□□ 1.29
PDLIM4-206ENST00000474421 IGSF9BQ9UPX0 1349 aa23.08■■□□□ 1.28
PDLIM4-206ENST00000474421 H3BNC9 293 aa23.07■■□□□ 1.28
PDLIM4-206ENST00000474421 ADAMTS3O15072 1205 aa23.07■■□□□ 1.28
PDLIM4-206ENST00000474421 PSAPP07602 524 aa23.07■■□□□ 1.28
PDLIM4-206ENST00000474421 TMEM62Q0P6H9 643 aa23.07■■□□□ 1.28
PDLIM4-206ENST00000474421 PAK2Q13177 524 aa23.07■■□□□ 1.28
PDLIM4-206ENST00000474421 RASGRP4Q8TDF6 673 aa23.07■■□□□ 1.28
PDLIM4-206ENST00000474421 BBXQ8WY36 941 aaPredicted RBP23.07■■□□□ 1.28
PDLIM4-206ENST00000474421 EVPLQ92817 2033 aa23.07■■□□□ 1.28
PDLIM4-206ENST00000474421 ADGRA3Q8IWK6 1321 aa23.07■■□□□ 1.28
PDLIM4-206ENST00000474421 PPFIA3O75145 1194 aa23.06■■□□□ 1.28
PDLIM4-206ENST00000474421 RB1P06400 928 aa23.06■■□□□ 1.28
PDLIM4-206ENST00000474421 KCNQ1P51787 676 aa23.06■■□□□ 1.28
PDLIM4-206ENST00000474421 GPM6BQ13491 265 aa23.06■■□□□ 1.28
PDLIM4-206ENST00000474421 TIGD5Q53EQ6 642 aa23.06■■□□□ 1.28
PDLIM4-206ENST00000474421 ODR4Q5SWX8 454 aa23.06■■□□□ 1.28
PDLIM4-206ENST00000474421 PADI3Q9ULW8 664 aa23.06■■□□□ 1.28
PDLIM4-206ENST00000474421 CEP131Q9UPN4 1083 aa23.06■■□□□ 1.28
PDLIM4-206ENST00000474421 MAFBQ9Y5Q3 323 aaPredicted RBP23.06■■□□□ 1.28
PDLIM4-206ENST00000474421 DEXIO95424 95 aa23.05■■□□□ 1.28
PDLIM4-206ENST00000474421 FAM167AQ96KS9 214 aa23.05■■□□□ 1.28
PDLIM4-206ENST00000474421 UIMC1Q96RL1 719 aa23.05■■□□□ 1.28
PDLIM4-206ENST00000474421 SAMM50Q9Y512 469 aa23.05■■□□□ 1.28
PDLIM4-206ENST00000474421 WDR81Q562E7 1941 aa23.04■■□□□ 1.28
PDLIM4-206ENST00000474421 BDP1A6H8Y1 2624 aa23.04■■□□□ 1.28
PDLIM4-206ENST00000474421 WDR64B1ANS9 1081 aa23.04■■□□□ 1.28
PDLIM4-206ENST00000474421 C5orf67F2Z3F1 127 aa23.04■■□□□ 1.28
PDLIM4-206ENST00000474421 STAG3L1P0CL83 205 aa23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms