RNA–Protein interactions for RNA: ENST00000474412.1

VPS50-211, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 819 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-211ENST00000474412 SUPT16HQ9Y5B9 1047 aaKnown RBP8.54□□□□□ -1.04
VPS50-211ENST00000474412 COL11A1P12107 1806 aaPredicted RBP8.54□□□□□ -1.04
VPS50-211ENST00000474412 GAKO14976 1311 aa8.54□□□□□ -1.04
VPS50-211ENST00000474412 CA12O43570 354 aa8.53□□□□□ -1.04
VPS50-211ENST00000474412 GARTP22102 1010 aa8.53□□□□□ -1.04
VPS50-211ENST00000474412 CAP1Q01518 475 aa8.53□□□□□ -1.04
VPS50-211ENST00000474412 TNNI3KQ59H18 835 aa8.53□□□□□ -1.04
VPS50-211ENST00000474412 CDC42EP5Q6NZY7 148 aa8.53□□□□□ -1.04
VPS50-211ENST00000474412 HHIPL2Q6UWX4 724 aa8.53□□□□□ -1.04
VPS50-211ENST00000474412 REC114Q7Z4M0 266 aa8.53□□□□□ -1.04
VPS50-211ENST00000474412 MCATQ8IVS2 390 aaKnown RBP8.53□□□□□ -1.04
VPS50-211ENST00000474412 ZFPM1Q8IX07 1006 aa8.53□□□□□ -1.04
VPS50-211ENST00000474412 FAM13CQ8NE31 585 aa8.53□□□□□ -1.04
VPS50-211ENST00000474412 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.53□□□□□ -1.04
VPS50-211ENST00000474412 FBXO27Q8NI29 283 aa8.53□□□□□ -1.04
VPS50-211ENST00000474412 OPTNQ96CV9 577 aa8.53□□□□□ -1.04
VPS50-211ENST00000474412 DDX4Q9NQI0 724 aaKnown RBP8.53□□□□□ -1.04
VPS50-211ENST00000474412 HMG20BQ9P0W2 317 aa8.53□□□□□ -1.04
VPS50-211ENST00000474412 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.53□□□□□ -1.04
VPS50-211ENST00000474412 ABCF2Q9UG63 623 aa8.53□□□□□ -1.04
VPS50-211ENST00000474412 DENND2AQ9ULE3 1009 aa8.53□□□□□ -1.04
VPS50-211ENST00000474412 EXOC6BQ9Y2D4 811 aa8.53□□□□□ -1.04
VPS50-211ENST00000474412 FPGT-TNNI3KV9GXZ4 949 aa8.53□□□□□ -1.04
VPS50-211ENST00000474412 MROH7-TTC4A0A0A0MT08 1334 aa8.53□□□□□ -1.04
VPS50-211ENST00000474412 CYP7A1P22680 504 aa8.52□□□□□ -1.05
VPS50-211ENST00000474412 ZNF76P36508 570 aa8.52□□□□□ -1.05
VPS50-211ENST00000474412 YARSP54577 528 aaKnown RBP8.52□□□□□ -1.05
VPS50-211ENST00000474412 ATP8B2P98198 1209 aa8.52□□□□□ -1.05
VPS50-211ENST00000474412 PLCL1Q15111 1095 aa8.52□□□□□ -1.05
VPS50-211ENST00000474412 FBXL19Q6PCT2 694 aa8.52□□□□□ -1.05
VPS50-211ENST00000474412 SPRED2Q7Z698 418 aa8.52□□□□□ -1.05
VPS50-211ENST00000474412 CDH24Q86UP0 819 aa8.52□□□□□ -1.05
VPS50-211ENST00000474412 SPACA3Q8IXA5 215 aa8.52□□□□□ -1.05
VPS50-211ENST00000474412 ANKRD13AQ8IZ07 590 aa8.52□□□□□ -1.05
VPS50-211ENST00000474412 RIN3Q8TB24 985 aa8.52□□□□□ -1.05
VPS50-211ENST00000474412 ZNF296Q8WUU4 475 aaPredicted RBP8.52□□□□□ -1.05
VPS50-211ENST00000474412 TNKS2Q9H2K2 1166 aa8.52□□□□□ -1.05
VPS50-211ENST00000474412 DBNLQ9UJU6 430 aaKnown RBP8.52□□□□□ -1.05
VPS50-211ENST00000474412 SUGT1Q9Y2Z0 365 aa8.52□□□□□ -1.05
VPS50-211ENST00000474412 ALPK3Q96L96 1907 aa8.52□□□□□ -1.05
VPS50-211ENST00000474412 MYH4Q9Y623 1939 aa8.52□□□□□ -1.05
VPS50-211ENST00000474412 PDS5AQ29RF7 1337 aaKnown RBP8.52□□□□□ -1.05
VPS50-211ENST00000474412 A0A0G2JMZ2 1700 aa8.51□□□□□ -1.05
VPS50-211ENST00000474412 GREB1LQ9C091 1923 aaPredicted RBP8.51□□□□□ -1.05
VPS50-211ENST00000474412 HTTP42858 3142 aa8.51□□□□□ -1.05
VPS50-211ENST00000474412 SURF6O75683 361 aaKnown RBP8.51□□□□□ -1.05
VPS50-211ENST00000474412 CBX7O95931 251 aa8.51□□□□□ -1.05
VPS50-211ENST00000474412 BTDP43251 543 aa8.51□□□□□ -1.05
VPS50-211ENST00000474412 TM4SF4P48230 202 aa8.51□□□□□ -1.05
VPS50-211ENST00000474412 TNNI2P48788 182 aa8.51□□□□□ -1.05
VPS50-211ENST00000474412 RGS3P49796 1198 aa8.51□□□□□ -1.05
VPS50-211ENST00000474412 MECOMQ03112 1051 aa8.51□□□□□ -1.05
VPS50-211ENST00000474412 G3BP1Q13283 466 aaKnown RBP eCLIP8.51□□□□□ -1.05
VPS50-211ENST00000474412 MVPQ14764 893 aaKnown RBP8.51□□□□□ -1.05
VPS50-211ENST00000474412 SUPT20HL1Q3ZLR7 823 aa8.51□□□□□ -1.05
VPS50-211ENST00000474412 MCTP1Q6DN14 999 aa8.51□□□□□ -1.05
VPS50-211ENST00000474412 MIGA2Q7L4E1 593 aa8.51□□□□□ -1.05
VPS50-211ENST00000474412 ADGRA1Q86SQ6 560 aa8.51□□□□□ -1.05
VPS50-211ENST00000474412 FAM83AQ86UY5 434 aa8.51□□□□□ -1.05
VPS50-211ENST00000474412 DZIP1Q86YF9 867 aaKnown RBP8.51□□□□□ -1.05
VPS50-211ENST00000474412 MFSD4AQ8N468 514 aa8.51□□□□□ -1.05
VPS50-211ENST00000474412 ZKSCAN4Q969J2 545 aaPredicted RBP8.51□□□□□ -1.05
VPS50-211ENST00000474412 WRNIP1Q96S55 665 aa8.51□□□□□ -1.05
VPS50-211ENST00000474412 PTPN18Q99952 460 aa8.51□□□□□ -1.05
VPS50-211ENST00000474412 BACH2Q9BYV9 841 aa8.51□□□□□ -1.05
VPS50-211ENST00000474412 CCDC8Q9H0W5 538 aaPredicted RBP8.51□□□□□ -1.05
VPS50-211ENST00000474412 GNL3LQ9NVN8 582 aaKnown RBP8.51□□□□□ -1.05
VPS50-211ENST00000474412 TMOD2Q9NZR1 351 aa8.51□□□□□ -1.05
VPS50-211ENST00000474412 REV1Q9UBZ9 1251 aa8.51□□□□□ -1.05
VPS50-211ENST00000474412 KLHL3Q9UH77 587 aa8.51□□□□□ -1.05
VPS50-211ENST00000474412 HDAC5Q9UQL6 1122 aa8.51□□□□□ -1.05
VPS50-211ENST00000474412 POLR3KQ9Y2Y1 108 aaPredicted RBP8.51□□□□□ -1.05
VPS50-211ENST00000474412 SNX11Q9Y5W9 270 aa8.51□□□□□ -1.05
VPS50-211ENST00000474412 COL2A1P02458 1487 aaPredicted RBP8.51□□□□□ -1.05
VPS50-211ENST00000474412 RLFQ13129 1914 aa8.5□□□□□ -1.05
VPS50-211ENST00000474412 DDTLA6NHG4 134 aaPredicted RBP8.5□□□□□ -1.05
VPS50-211ENST00000474412 WDHD1O75717 1129 aaPredicted RBP8.5□□□□□ -1.05
VPS50-211ENST00000474412 HTR3BO95264 441 aa8.5□□□□□ -1.05
VPS50-211ENST00000474412 ZBTB48P10074 688 aaPredicted RBP8.5□□□□□ -1.05
VPS50-211ENST00000474412 CD8BP10966 210 aa8.5□□□□□ -1.05
VPS50-211ENST00000474412 CD96P40200 585 aa8.5□□□□□ -1.05
VPS50-211ENST00000474412 CLCN7P51798 805 aa8.5□□□□□ -1.05
VPS50-211ENST00000474412 RHBDL3P58872 404 aa8.5□□□□□ -1.05
VPS50-211ENST00000474412 SREBF2Q12772 1141 aa8.5□□□□□ -1.05
VPS50-211ENST00000474412 CRHR2Q13324 411 aa8.5□□□□□ -1.05
VPS50-211ENST00000474412 OS9Q13438 667 aaPredicted RBP8.5□□□□□ -1.05
VPS50-211ENST00000474412 PICALMQ13492 652 aa8.5□□□□□ -1.05
VPS50-211ENST00000474412 NKPD1Q17RQ9 610 aa8.5□□□□□ -1.05
VPS50-211ENST00000474412 SIRT2Q8IXJ6 389 aa8.5□□□□□ -1.05
VPS50-211ENST00000474412 SPATA5Q8NB90 893 aa8.5□□□□□ -1.05
VPS50-211ENST00000474412 ASB11Q8WXH4 323 aa8.5□□□□□ -1.05
VPS50-211ENST00000474412 BRI3BPQ8WY22 251 aa8.5□□□□□ -1.05
VPS50-211ENST00000474412 NSUN4Q96CB9 384 aaKnown RBP8.5□□□□□ -1.05
VPS50-211ENST00000474412 EAF2Q96CJ1 260 aaPredicted RBP8.5□□□□□ -1.05
VPS50-211ENST00000474412 IL1RAPL2Q9NP60 686 aa8.5□□□□□ -1.05
VPS50-211ENST00000474412 USP40Q9NVE5 1235 aa8.5□□□□□ -1.05
VPS50-211ENST00000474412 ADGRE2Q9UHX3 823 aa8.5□□□□□ -1.05
VPS50-211ENST00000474412 RCAN3Q9UKA8 241 aa8.5□□□□□ -1.05
VPS50-211ENST00000474412 MANSC4A6NHS7 340 aaPredicted RBP8.49□□□□□ -1.05
VPS50-211ENST00000474412 CCDC85CA6NKD9 419 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms