RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 PDAP1Q13442 181 aaKnown RBP9.62□□□□□ -0.87
COL6A3-210ENST00000473258 PTPROQ16827 1216 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 VSTM4Q8IW00 320 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 PLGRKTQ9HBL7 147 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 WDR70Q9NW82 654 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 ERFP50548 548 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 IFIT1BQ5T764 474 aaKnown RBP9.61□□□□□ -0.87
COL6A3-210ENST00000473258 DCUN1D2Q6PH85 259 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 SARM1Q6SZW1 724 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 ANKRD44Q8N8A2 993 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 MLPHQ9BV36 600 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-210ENST00000473258 CCDC59Q9P031 241 aaKnown RBP9.61□□□□□ -0.87
COL6A3-210ENST00000473258 SCRIBQ14160 1630 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 SOWAHDA6NJG2 315 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-210ENST00000473258 RTN3O95197 1032 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-210ENST00000473258 BCL10O95999 233 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 CALB1P05937 261 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 SERPINH1P50454 418 aaKnown RBP9.61□□□□□ -0.87
COL6A3-210ENST00000473258 SEC24CP53992 1094 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 PKP1Q13835 747 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 KRT31Q15323 416 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 TRIM71Q2Q1W2 868 aaKnown RBP9.61□□□□□ -0.87
COL6A3-210ENST00000473258 EFCAB2Q5VUJ9 269 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 PLEKHM2Q8IWE5 1019 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 SRRM1Q8IYB3 904 aaKnown RBP9.61□□□□□ -0.87
COL6A3-210ENST00000473258 RUBCNQ92622 972 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 ERP27Q96DN0 273 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 AZI2Q9H6S1 392 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 ADA2Q9NZK5 511 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 LCMT1Q9UIC8 334 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 A0A1W2PRG6 482 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 ANO9A1A5B4 782 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 H7C1D1 291 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 KRT37O76014 449 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 PYGMP11217 842 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 BCRP11274 1271 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 CYP4A11Q02928 519 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 BYSLQ13895 437 aaKnown RBP9.61□□□□□ -0.87
COL6A3-210ENST00000473258 BBS9Q3SYG4 887 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 CYP4A22Q5TCH4 519 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 RNF19BQ6ZMZ0 732 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 TTC6Q86TZ1 520 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 PASD1Q8IV76 773 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 SH2D3CQ8N5H7 860 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 ARHGAP45Q92619 1136 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 TTC17Q96AE7 1141 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 ZFRQ96KR1 1074 aaKnown RBP9.61□□□□□ -0.87
COL6A3-210ENST00000473258 XPO6Q96QU8 1125 aaKnown RBP9.61□□□□□ -0.87
COL6A3-210ENST00000473258 KCNK16Q96T55 309 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 LSG1Q9H089 658 aaKnown RBP9.61□□□□□ -0.87
COL6A3-210ENST00000473258 STK39Q9UEW8 545 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 DTNAQ9Y4J8 743 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 IQANK1A0A1B0GTG1 560 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 TCP11X1B4DZS4 312 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 CALUO43852 315 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-210ENST00000473258 CDC40O60508 579 aaKnown RBP eCLIP9.61□□□□□ -0.87
COL6A3-210ENST00000473258 RBL2Q08999 1139 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 ARMC4Q5T2S8 1044 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 POTEAQ6S8J7 498 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.61□□□□□ -0.87
COL6A3-210ENST00000473258 ANKRD13AQ8IZ07 590 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 ZNF444Q8N0Y2 327 aaPredicted RBP9.61□□□□□ -0.87
COL6A3-210ENST00000473258 GALNT4Q8N4A0 578 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 RHPN1Q8TCX5 695 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 CITED4Q96RK1 184 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 ABCF3Q9NUQ8 709 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 TMED5Q9Y3A6 229 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 A0A0G2JPF8 293 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 HNRNPCL3B7ZW38 293 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 KLHL41O60662 606 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 ACSL3O95573 720 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 HNRNPCL4P0DMR1 293 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 OCRLQ01968 901 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 FAM45BPQ6NSW5 357 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 PBXIP1Q96AQ6 731 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 TINF2Q9BSI4 451 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 DHX36Q9H2U1 1008 aaKnown RBP9.61□□□□□ -0.87
COL6A3-210ENST00000473258 ZWILCHQ9H900 591 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 PNMA2Q9UL42 364 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 TRIM33Q9UPN9 1127 aa9.61□□□□□ -0.87
COL6A3-210ENST00000473258 CENPXA8MT69 81 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 DR1Q01658 176 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 OTUD4Q01804 1114 aaKnown RBP9.6□□□□□ -0.87
COL6A3-210ENST00000473258 MORF4L2Q15014 288 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 SGSM1Q2NKQ1 1148 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 BSPRYQ5W0U4 402 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 ZNF579Q8NAF0 562 aaKnown RBP9.6□□□□□ -0.87
COL6A3-210ENST00000473258 RBM41Q96IZ5 413 aaKnown RBP9.6□□□□□ -0.87
COL6A3-210ENST00000473258 WWP1Q9H0M0 922 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 MLXIPLQ9NP71 852 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 C8orf4Q9NR00 106 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 TSPAN4O14817 238 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 NDUFA10O95299 355 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 PYGLP06737 847 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 NSFP46459 744 aaKnown RBP9.6□□□□□ -0.87
COL6A3-210ENST00000473258 PPM1FP49593 454 aaPredicted RBP9.6□□□□□ -0.87
COL6A3-210ENST00000473258 MXI1P50539 228 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 IST1P53990 364 aa9.6□□□□□ -0.87
COL6A3-210ENST00000473258 LRRC14Q15048 493 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms