RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 SPC24Q8NBT2 197 aa10.41□□□□□ -0.74
VPS52-216ENST00000471309 ANKRD20A12PQ8NF67 263 aa10.41□□□□□ -0.74
VPS52-216ENST00000471309 CTAGE1Q96RT6 745 aa10.41□□□□□ -0.74
VPS52-216ENST00000471309 TIPINQ9BVW5 301 aa10.41□□□□□ -0.74
VPS52-216ENST00000471309 GPBP1L1Q9HC44 474 aaPredicted RBP10.41□□□□□ -0.74
VPS52-216ENST00000471309 OLFML3Q9NRN5 406 aa10.41□□□□□ -0.74
VPS52-216ENST00000471309 ANKEF1Q9NU02 776 aa10.41□□□□□ -0.74
VPS52-216ENST00000471309 IMPACTQ9P2X3 320 aa10.41□□□□□ -0.74
VPS52-216ENST00000471309 SEL1LQ9UBV2 794 aa10.41□□□□□ -0.74
VPS52-216ENST00000471309 LIMA1Q9UHB6 759 aaKnown RBP10.41□□□□□ -0.74
VPS52-216ENST00000471309 UBE4BO95155 1302 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 A0A1B0GTH6 734 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 LRRC10BA6NIK2 292 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 KCNJ18B7U540 433 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 IGF2BP3O00425 579 aaKnown RBP eCLIP10.4□□□□□ -0.74
VPS52-216ENST00000471309 FARP2O94887 1054 aaPredicted RBP10.4□□□□□ -0.74
VPS52-216ENST00000471309 FAM13AO94988 1023 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 SUPT20HL2P0C7V6 817 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 MAPK4P31152 587 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 SP2Q02086 613 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 GRB14Q14449 540 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 KCNJ12Q14500 433 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 NEDD9Q14511 834 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 BMT2Q1RMZ1 405 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 ZNF792Q3KQV3 632 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 ZCWPW2Q504Y3 356 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 HSP90AA4PQ58FG1 418 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 TCP11X2Q5H9J9 407 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 ANKRD40Q6AI12 368 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 PADI6Q6TGC4 694 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 ABHD15Q6UXT9 468 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 SEPT14Q6ZU15 432 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 EPM2AIP1Q7L775 607 aaPredicted RBP10.4□□□□□ -0.74
VPS52-216ENST00000471309 VSTM4Q8IW00 320 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 FAM114A1Q8IWE2 563 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 CSGALNACT2Q8N6G5 542 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 SMC1BQ8NDV3 1235 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 GLIS3Q8NEA6 775 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 HHIPL1Q96JK4 782 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 TSG101Q99816 390 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 DUSP9Q99956 384 aaKnown RBP10.4□□□□□ -0.74
VPS52-216ENST00000471309 SEMA6BQ9H3T3 888 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 ZHX3Q9H4I2 956 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 PARVGQ9HBI0 331 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 INTS13Q9NVM9 706 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 IVNS1ABPQ9Y6Y0 642 aa10.4□□□□□ -0.74
VPS52-216ENST00000471309 ZNFX1Q9P2E3 1918 aaKnown RBP10.4□□□□□ -0.74
VPS52-216ENST00000471309 SYNGAP1Q96PV0 1343 aa10.39□□□□□ -0.75
VPS52-216ENST00000471309 IGKV6D-21A0A0A0MT36 114 aa10.39□□□□□ -0.75
VPS52-216ENST00000471309 RSPH10B2B2RC85 870 aa10.39□□□□□ -0.75
VPS52-216ENST00000471309 KIF3CO14782 793 aa10.39□□□□□ -0.75
VPS52-216ENST00000471309 ZBTB39O15060 712 aa10.39□□□□□ -0.75
VPS52-216ENST00000471309 COBLO75128 1261 aa10.39□□□□□ -0.75
VPS52-216ENST00000471309 ATG7O95352 703 aa10.39□□□□□ -0.75
VPS52-216ENST00000471309 RSPH10BP0C881 870 aa10.39□□□□□ -0.75
VPS52-216ENST00000471309 ADORA2AP29274 412 aa10.39□□□□□ -0.75
VPS52-216ENST00000471309 GSDMDP57764 484 aa10.39□□□□□ -0.75
VPS52-216ENST00000471309 INHBEP58166 350 aa10.39□□□□□ -0.75
VPS52-216ENST00000471309 NR1I3Q14994 352 aa10.39□□□□□ -0.75
VPS52-216ENST00000471309 CCDC144BQ3MJ40 725 aa10.39□□□□□ -0.75
VPS52-216ENST00000471309 FILIP1LQ4L180 1135 aa10.39□□□□□ -0.75
VPS52-216ENST00000471309 METTL7BQ6UX53 244 aa10.39□□□□□ -0.75
VPS52-216ENST00000471309 GPR142Q7Z601 462 aa10.39□□□□□ -0.75
VPS52-216ENST00000471309 ZSCAN30Q86W11 494 aa10.39□□□□□ -0.75
VPS52-216ENST00000471309 IRF2BP1Q8IU81 584 aa10.39□□□□□ -0.75
VPS52-216ENST00000471309 CCDC60Q8IWA6 550 aaPredicted RBP10.39□□□□□ -0.75
VPS52-216ENST00000471309 SCFD1Q8WVM8 642 aa10.39□□□□□ -0.75
VPS52-216ENST00000471309 CCDC102AQ96A19 550 aa10.39□□□□□ -0.75
VPS52-216ENST00000471309 CCDC43Q96MW1 224 aaKnown RBP10.39□□□□□ -0.75
VPS52-216ENST00000471309 NAP1L5Q96NT1 182 aaPredicted RBP10.39□□□□□ -0.75
VPS52-216ENST00000471309 FGFBP2Q9BYJ0 223 aa10.39□□□□□ -0.75
VPS52-216ENST00000471309 GABBR1Q9UBS5 961 aa10.39□□□□□ -0.75
VPS52-216ENST00000471309 DDX41Q9UJV9 622 aaKnown RBP10.39□□□□□ -0.75
VPS52-216ENST00000471309 DIS3Q9Y2L1 958 aaKnown RBP10.39□□□□□ -0.75
VPS52-216ENST00000471309 ZKSCAN5Q9Y2L8 839 aa10.39□□□□□ -0.75
VPS52-216ENST00000471309 SLC15A5A6NIM6 579 aa10.38□□□□□ -0.75
VPS52-216ENST00000471309 FAM155AB1AL88 458 aaPredicted RBP10.38□□□□□ -0.75
VPS52-216ENST00000471309 BACH1O14867 736 aa10.38□□□□□ -0.75
VPS52-216ENST00000471309 EIF3DO15371 548 aaKnown RBP eCLIP10.38□□□□□ -0.75
VPS52-216ENST00000471309 ZNF862O60290 1169 aa10.38□□□□□ -0.75
VPS52-216ENST00000471309 HIP1RO75146 1068 aa10.38□□□□□ -0.75
VPS52-216ENST00000471309 STBD1O95210 358 aa10.38□□□□□ -0.75
VPS52-216ENST00000471309 FGFR1OPO95684 399 aaKnown RBP10.38□□□□□ -0.75
VPS52-216ENST00000471309 GGPS1O95749 300 aa10.38□□□□□ -0.75
VPS52-216ENST00000471309 MAPTP10636 758 aaKnown RBP10.38□□□□□ -0.75
VPS52-216ENST00000471309 PTGS1P23219 599 aa10.38□□□□□ -0.75
VPS52-216ENST00000471309 CASP5P51878 434 aa10.38□□□□□ -0.75
VPS52-216ENST00000471309 COPB1P53618 953 aaKnown RBP10.38□□□□□ -0.75
VPS52-216ENST00000471309 PRKCEQ02156 737 aa10.38□□□□□ -0.75
VPS52-216ENST00000471309 SP4Q02446 784 aa10.38□□□□□ -0.75
VPS52-216ENST00000471309 SREBF2Q12772 1141 aa10.38□□□□□ -0.75
VPS52-216ENST00000471309 MAPK7Q13164 816 aa10.38□□□□□ -0.75
VPS52-216ENST00000471309 KRT31Q15323 416 aa10.38□□□□□ -0.75
VPS52-216ENST00000471309 LRRC41Q15345 812 aa10.38□□□□□ -0.75
VPS52-216ENST00000471309 EDRF1Q3B7T1 1238 aa10.38□□□□□ -0.75
VPS52-216ENST00000471309 SWSAP1Q6NVH7 229 aa10.38□□□□□ -0.75
VPS52-216ENST00000471309 MAMDC4Q6UXC1 1216 aa10.38□□□□□ -0.75
VPS52-216ENST00000471309 LRRC55Q6ZSA7 311 aa10.38□□□□□ -0.75
VPS52-216ENST00000471309 STXBP4Q6ZWJ1 553 aa10.38□□□□□ -0.75
VPS52-216ENST00000471309 ANO5Q75V66 913 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms