RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 ZNF746Q6NUN9 644 aaPredicted RBP8.4□□□□□ -1.06
COL6A3-208ENST00000468792 RNF207Q6ZRF8 634 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.4□□□□□ -1.06
COL6A3-208ENST00000468792 ZNF720Q7Z2F6 126 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 SFR1Q86XK3 245 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 TPH2Q8IWU9 490 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 C4orf19Q8IY42 314 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 TXLNBQ8N3L3 684 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 EHBP1Q8NDI1 1231 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 ZNF592Q92610 1267 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 INPP4AQ96PE3 977 aaPredicted RBP8.4□□□□□ -1.06
COL6A3-208ENST00000468792 FIZ1Q96SL8 496 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 PDCD2LQ9BRP1 358 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 RUSC1Q9BVN2 902 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 TEX13BQ9BXU2 312 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 PDCL3Q9H2J4 239 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 SPON1Q9HCB6 807 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 RAVER2Q9HCJ3 691 aaKnown RBP8.4□□□□□ -1.06
COL6A3-208ENST00000468792 PLCB1Q9NQ66 1216 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 PXMP2Q9NR77 195 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 ADARB2Q9NS39 739 aaKnown RBP8.4□□□□□ -1.06
COL6A3-208ENST00000468792 ANKEF1Q9NU02 776 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 RGL1Q9NZL6 768 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 TMOD4Q9NZQ9 345 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 ZNF214Q9UL59 606 aaPredicted RBP8.4□□□□□ -1.06
COL6A3-208ENST00000468792 PCDHB13Q9Y5F0 798 aa8.4□□□□□ -1.06
COL6A3-208ENST00000468792 SBF1O95248 1867 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 ATP8B3O60423 1300 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 NFASCO94856 1347 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 NPHP3-ACAD11A0A0J9YXS1 232 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 MAPK13O15264 365 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 USP2O75604 605 aaPredicted RBP8.39□□□□□ -1.07
COL6A3-208ENST00000468792 PPP1R37O75864 691 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 FAM13AO94988 1023 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 IPO7O95373 1038 aaKnown RBP8.39□□□□□ -1.07
COL6A3-208ENST00000468792 TAL1P17542 331 aaPredicted RBP8.39□□□□□ -1.07
COL6A3-208ENST00000468792 NR2F2P24468 414 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 CCND2P30279 289 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 ABCD1P33897 745 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 ARHGAP25P42331 645 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 HIRAP54198 1017 aaPredicted RBP8.39□□□□□ -1.07
COL6A3-208ENST00000468792 CYP4A11Q02928 519 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 ITGB3BPQ13352 177 aaPredicted RBP8.39□□□□□ -1.07
COL6A3-208ENST00000468792 CTTNQ14247 550 aaKnown RBP8.39□□□□□ -1.07
COL6A3-208ENST00000468792 MTF1Q14872 753 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 LRRC41Q15345 812 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 CCDC40Q4G0X9 1142 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 ARHGAP29Q52LW3 1261 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 MUM1L1Q5H9M0 696 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 LBX2Q6XYB7 198 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 MIER3Q7Z3K6 550 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 NLRX1Q86UT6 975 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 CREBRFQ8IUR6 639 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 C12orf56Q8IXR9 622 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 SMAP1Q8IYB5 467 aaPredicted RBP8.39□□□□□ -1.07
COL6A3-208ENST00000468792 PDCL2Q8N4E4 241 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 GLIS3Q8NEA6 775 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 CHST13Q8NET6 341 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 DNERQ8NFT8 737 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 NLGN2Q8NFZ4 835 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 NEK11Q8NG66 645 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 TRPM4Q8TD43 1214 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 NSUN6Q8TEA1 469 aaKnown RBP8.39□□□□□ -1.07
COL6A3-208ENST00000468792 ZC3H15Q8WU90 426 aaKnown RBP8.39□□□□□ -1.07
COL6A3-208ENST00000468792 BAP1Q92560 729 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 ATG4CQ96DT6 458 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 BORCS6Q96GS4 357 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 TAAR1Q96RJ0 339 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 IWS1Q96ST2 819 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 RMDN3Q96TC7 470 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 LXNQ9BS40 222 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 TSGA10Q9BZW7 698 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 MRPL44Q9H9J2 332 aaKnown RBP8.39□□□□□ -1.07
COL6A3-208ENST00000468792 C17orf75Q9HAS0 396 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 RNF146Q9NTX7 359 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 RYDENQ9NUL5 291 aaKnown RBP8.39□□□□□ -1.07
COL6A3-208ENST00000468792 AGPAT5Q9NUQ2 364 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 DMAC2Q9NW81 257 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 GGA3Q9NZ52 723 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 CEP72Q9P209 647 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 ARMCX3Q9UH62 379 aaPredicted RBP8.39□□□□□ -1.07
COL6A3-208ENST00000468792 KCNG1Q9UIX4 513 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.39□□□□□ -1.07
COL6A3-208ENST00000468792 ZHX2Q9Y6X8 837 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 SSC5DA1L4H1 1573 aa8.39□□□□□ -1.07
COL6A3-208ENST00000468792 ZC3H4Q9UPT8 1303 aaKnown RBP8.38□□□□□ -1.07
COL6A3-208ENST00000468792 ARHGEF35A5YM69 484 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 UNCXA6NJT0 531 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 EFCAB8A8MWE9 144 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 WDR64B1ANS9 1081 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 RBAK-RBAKDNI3L0D1 243 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 PES1O00541 588 aaKnown RBP8.38□□□□□ -1.07
COL6A3-208ENST00000468792 FANCGO15287 622 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 TGFB1I1O43294 461 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 NR3C1P04150 777 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 ICAM3P32942 547 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 RARRES1P49788 294 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 CASP5P51878 434 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 RTP1P59025 263 aa8.38□□□□□ -1.07
COL6A3-208ENST00000468792 PSMC5P62195 406 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms